View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11069A_low_197 (Length: 242)
Name: NF11069A_low_197
Description: NF11069A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11069A_low_197 |
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Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 11027780 - 11027559
Alignment:
| Q |
18 |
atttctaatcaatatactccacttcatgaaagacttgatctactgagagagttttatgggagtttgtgttttactgacacgactctttcattttttcctt |
117 |
Q |
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| T |
11027780 |
atttctaatcaatatattccacttaatgaatgacttgatctactgagagagttttatgggagtttgtgttttactgacacgactctttcattttttcctt |
11027681 |
T |
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| Q |
118 |
ttccatctgatgagaaggcacaaaacctgagatttgtaggttaacaagattttattggaggtctcgtagctctgaatatttattgtggatttcaaggaaa |
217 |
Q |
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| T |
11027680 |
ttccatctgatgagaaggcacagaacctgagatttggaggttaacaagattttgttggaggtctcgtaggtctgaatatttattgtggatttcaaggaag |
11027581 |
T |
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| Q |
218 |
tggcatcgttttttcacatgat |
239 |
Q |
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| T |
11027580 |
tggcatcgttttttcacatgat |
11027559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 52 - 239
Target Start/End: Complemental strand, 11042627 - 11042436
Alignment:
| Q |
52 |
ttgatctactgagagagttttatgggagtttgtgttttactgacacgactctttcatt-ttttccttttccatctgatgagaaggcacaaaacctgagat |
150 |
Q |
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|||||||||||| ||||||||||||| |||| ||||||||| ||| |||| ||||||| |||||| |||| ||||||| | | |||||| |||| | | |
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| T |
11042627 |
ttgatctactgacagagttttatgggtgtttctgttttactaacatgactatttcatttttttccctttcgatctgat-aaagggcacataaccctaatt |
11042529 |
T |
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| Q |
151 |
ttgtaggttaacaagattttattggaggtctcgtagctctgaatatttattg----tggatttcaaggaaatggcatcgttttttcacatgat |
239 |
Q |
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| T |
11042528 |
ttggaggtcaacaagattttgttcgaggtttcattgttctgattatttcttgtgactggatttcaaggaattggcatcgttttttcacatgat |
11042436 |
T |
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