View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11069A_low_2 (Length: 594)
Name: NF11069A_low_2
Description: NF11069A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11069A_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 456; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 14 - 588
Target Start/End: Original strand, 34571162 - 34571722
Alignment:
| Q |
14 |
gcttgacagagcttgaccttgtttgtccattacaggtgaaaaccacataaggatctgacaaccctgttgactccaatgagactaggtcaacaccctcaat |
113 |
Q |
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| T |
34571162 |
gcttgacagagcttgaccttgtttgtccattacaggtgaaaaccacataaggatctgacaaccctgttgactccaatgagactaggtcaacaccctcaat |
34571261 |
T |
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| Q |
114 |
taaagctacagtaacaacccatccatcaccatgtgctttcatgccatggtcagttcctattagaagagaatgaagtcaaaactaaacgcctacatgaatt |
213 |
Q |
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| T |
34571262 |
taaagctacagtaacaacccatccatcaccatgtgctttcatgccatggtcagttcctattagaagagaatgaagtcaaaactaatcgcctacatgaatt |
34571361 |
T |
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| Q |
214 |
tacttgacaagtatgaagtgctgacacagatacggacagcagacataaagaccggtaatagtttgcgaaaagaaaagtgtcttgttggtgttaggcaccg |
313 |
Q |
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| T |
34571362 |
tacttgacaagtatgaagtgctgacacagatacgga-------------------tattagtttgcgaaaagaaaagtgtcttgttggtgttaggcaccg |
34571442 |
T |
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| Q |
314 |
gatacaccttca------atctgaaagtgtcggtgcaacatagatttacggtgataacaagtacaataatagtaggttcaaataacatgcttacccattt |
407 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34571443 |
gatacaccttcaatttcaatctgaaagtgtcggtgcaacatagatttacggtgataacaagtacaataatagtaggttcaaataacatgcttacccattt |
34571542 |
T |
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| Q |
408 |
gaaatctagcttgcacaaaatgagataccatatgataaacacgctccaactggataactaaaattccacttgttactagttctcctaagctatctggcag |
507 |
Q |
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| T |
34571543 |
gaaatctagcttgcacaaaatgagataccatatgataaacacgctccaactggataactaaaattccacttgttactagttctcctaagctatctggcag |
34571642 |
T |
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| Q |
508 |
ttcgatccctctaaattccaatccccgaggttgactccgaccttcaccttaaaatctggagcaacacatatcaacacataa |
588 |
Q |
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| T |
34571643 |
ttcgatccctctaaattccaatccccgaggttgacttggacc-acaccttaaaatatgcagcaacacatataaacacataa |
34571722 |
T |
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