View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11069A_low_20 (Length: 429)
Name: NF11069A_low_20
Description: NF11069A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11069A_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 410
Target Start/End: Complemental strand, 26871394 - 26870986
Alignment:
| Q |
1 |
aacatcgcataccgtagtccataagtcttcattgagaaatcctagtatatttgcgttaaaatgcccaagtttgagatgattattattcagctcaaaaact |
100 |
Q |
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| T |
26871394 |
aacatcgcataccgtcgtccataagtcttcattgagaaatcctagtatatttgcgtttaaatgcccaagtttgagatgattgttgttcagctcataaact |
26871295 |
T |
|
| Q |
101 |
tgatgttttgaagcacaaacttaccacagttggcaccaaagtaaatacttaataacaatgtagcaagtatccaaacacttggagaaccttcccttaagag |
200 |
Q |
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| T |
26871294 |
tgatgttttgaagcacaaacttaccacagttggcaccaaagtaaatacttaataacaatgtagcaattatccaaacacttggagaaccttcccttaaggg |
26871195 |
T |
|
| Q |
201 |
ggtcagttaaacacttcacttagcatctcactcaaacgactcaatatgggactcgggcacgctcataacatccaagtccctaccacagccccgtccctga |
300 |
Q |
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| T |
26871194 |
ggtcagttaaacacttcacttagcatctcactcaaacgactcaatatgggacacgggcacg-tcataacatccaagtccctaccacagccccgtccctga |
26871096 |
T |
|
| Q |
301 |
gagctgattcccggcggctatactctgttgttttactcggcctttccagtcagtccttccacaggaagccctttccaggccaacgacaatcagttctgat |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| ||||||| |
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| T |
26871095 |
gagctgattcccggcggctatactctgttgttttactcggcctttccagtcagtccttccataggaagccctttccaagccaacgacaatcaattctgat |
26870996 |
T |
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| Q |
401 |
accaattgat |
410 |
Q |
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|||||||||| |
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| T |
26870995 |
accaattgat |
26870986 |
T |
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