View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11069A_low_200 (Length: 241)
Name: NF11069A_low_200
Description: NF11069A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11069A_low_200 |
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Alignment Details
Target: chr6 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 24125296 - 24125520
Alignment:
| Q |
1 |
agtgaacactcgcaggtggggttgacaaaaactaggtccttgtttccagagatagtctgacctagactcaccccccatcgccctactctattagctccaa |
100 |
Q |
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| T |
24125296 |
agtgaacactcccgggtggggttgacaaaaactaggtccttgtttccagggatagtctgacctagactcaccccccatcgccctactctattagctccaa |
24125395 |
T |
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| Q |
101 |
tataaaatcaaggccaatttccactcgtaataggtacatgatgtatgannnnnnncttcaacggaaccattttcagaaagaaaaacaagtggaaagttga |
200 |
Q |
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| T |
24125396 |
tataaaatcaaggccaatttccactcataataggtacatgatgtatgatttttttcttcaacggaaccattttcagaaagaaaaacaagtggaaagttga |
24125495 |
T |
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| Q |
201 |
ttccacatgtgtcccatagagagca |
225 |
Q |
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| T |
24125496 |
ttccacatgtgtcctatagagagca |
24125520 |
T |
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Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 163 - 216
Target Start/End: Complemental strand, 45163287 - 45163235
Alignment:
| Q |
163 |
ggaaccattttcagaaagaaaaacaagtggaaagttgattccacatgtgtccca |
216 |
Q |
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| T |
45163287 |
ggaaccattttcagaaagaagaacaagtggaaagttgatt-cacatgtgtccca |
45163235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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