View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11069A_low_203 (Length: 241)

Name: NF11069A_low_203
Description: NF11069A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11069A_low_203
NF11069A_low_203
[»] chr2 (15 HSPs)
chr2 (13-226)||(332463-332676)
chr2 (21-85)||(42020203-42020267)
chr2 (13-89)||(43925070-43925146)
chr2 (20-86)||(13399104-13399170)
chr2 (22-87)||(7442889-7442954)
chr2 (22-86)||(9877082-9877146)
chr2 (22-65)||(4083405-4083448)
chr2 (22-85)||(32775903-32775966)
chr2 (117-157)||(5795437-5795477)
chr2 (13-87)||(38963708-38963782)
chr2 (20-54)||(44330580-44330614)
chr2 (22-71)||(41463531-41463580)
chr2 (13-73)||(24282972-24283032)
chr2 (22-54)||(39418051-39418083)
chr2 (22-54)||(42038721-42038753)
[»] chr1 (22 HSPs)
chr1 (13-84)||(21034530-21034601)
chr1 (22-86)||(4605197-4605261)
chr1 (22-87)||(37281290-37281355)
chr1 (22-86)||(3898570-3898634)
chr1 (22-86)||(16265231-16265295)
chr1 (22-86)||(16266360-16266424)
chr1 (22-86)||(26441832-26441896)
chr1 (22-86)||(43680268-43680332)
chr1 (22-86)||(50481474-50481538)
chr1 (22-72)||(47222413-47222463)
chr1 (114-175)||(43655747-43655808)
chr1 (13-85)||(38737378-38737450)
chr1 (22-57)||(3529374-3529409)
chr1 (22-57)||(48376343-48376378)
chr1 (20-54)||(14075929-14075963)
chr1 (13-68)||(38737847-38737904)
chr1 (22-54)||(1849899-1849931)
chr1 (26-54)||(16751484-16751512)
chr1 (22-86)||(24982549-24982613)
chr1 (22-86)||(25531976-25532040)
chr1 (26-86)||(32988348-32988408)
chr1 (22-54)||(38458928-38458960)
[»] chr8 (16 HSPs)
chr8 (22-70)||(10658175-10658223)
chr8 (22-85)||(6471043-6471106)
chr8 (13-72)||(20167590-20167649)
chr8 (22-86)||(18809474-18809538)
chr8 (22-70)||(44123868-44123916)
chr8 (22-85)||(12893726-12893789)
chr8 (13-86)||(31127804-31127877)
chr8 (22-71)||(45253944-45253993)
chr8 (22-58)||(886096-886132)
chr8 (22-85)||(14522577-14522640)
chr8 (22-85)||(30380728-30380791)
chr8 (24-73)||(3383608-3383657)
chr8 (22-87)||(8350878-8350943)
chr8 (22-54)||(3293132-3293164)
chr8 (22-54)||(37710097-37710129)
chr8 (22-54)||(40013849-40013881)
[»] chr4 (27 HSPs)
chr4 (13-88)||(18359970-18360045)
chr4 (13-88)||(36602883-36602958)
chr4 (22-86)||(55190565-55190629)
chr4 (22-87)||(50033218-50033284)
chr4 (30-71)||(51736968-51737009)
chr4 (13-73)||(19652268-19652328)
chr4 (22-70)||(50035734-50035782)
chr4 (22-85)||(1377229-1377292)
chr4 (22-85)||(23603647-23603710)
chr4 (22-89)||(39260128-39260195)
chr4 (22-91)||(4209557-4209626)
chr4 (22-54)||(6494788-6494820)
chr4 (22-82)||(19525717-19525777)
chr4 (22-86)||(25644557-25644621)
chr4 (22-58)||(39194110-39194146)
chr4 (22-86)||(45198339-45198403)
chr4 (22-73)||(5123169-5123220)
chr4 (22-85)||(7738819-7738882)
chr4 (22-88)||(46803830-46803896)
chr4 (13-54)||(9965437-9965478)
chr4 (22-51)||(19731200-19731229)
chr4 (22-54)||(3443418-3443450)
chr4 (22-54)||(4264332-4264364)
chr4 (22-86)||(6922939-6923003)
chr4 (22-58)||(19631507-19631543)
chr4 (22-54)||(46212381-46212413)
chr4 (22-58)||(55014457-55014493)
[»] chr3 (19 HSPs)
chr3 (22-73)||(3547432-3547483)
chr3 (22-86)||(32951135-32951199)
chr3 (13-87)||(36665207-36665281)
chr3 (24-85)||(46483748-46483809)
chr3 (22-85)||(53066568-53066631)
chr3 (22-87)||(10571142-10571207)
chr3 (22-71)||(15503221-15503270)
chr3 (26-70)||(35717870-35717914)
chr3 (34-85)||(28690707-28690758)
chr3 (32-87)||(29728096-29728151)
chr3 (22-87)||(47638253-47638318)
chr3 (13-90)||(49058045-49058122)
chr3 (22-86)||(4238493-4238557)
chr3 (34-86)||(10435329-10435381)
chr3 (22-54)||(21907194-21907226)
chr3 (22-54)||(32285207-32285239)
chr3 (22-54)||(38492249-38492281)
chr3 (26-86)||(45167501-45167561)
chr3 (22-54)||(54840159-54840191)
[»] chr7 (15 HSPs)
chr7 (13-72)||(44389299-44389358)
chr7 (22-86)||(10464114-10464178)
chr7 (22-86)||(48531520-48531584)
chr7 (26-85)||(24151581-24151640)
chr7 (22-85)||(34478008-34478071)
chr7 (22-71)||(18795154-18795203)
chr7 (13-86)||(35500746-35500819)
chr7 (22-86)||(37231562-37231626)
chr7 (25-85)||(47538124-47538184)
chr7 (22-86)||(47713501-47713565)
chr7 (22-85)||(31466358-31466421)
chr7 (22-60)||(46657831-46657869)
chr7 (22-54)||(4612118-4612150)
chr7 (22-54)||(23474000-23474032)
chr7 (22-54)||(44479752-44479784)
[»] chr5 (16 HSPs)
chr5 (22-85)||(2864152-2864215)
chr5 (22-85)||(37843575-37843638)
chr5 (22-86)||(4299832-4299896)
chr5 (22-86)||(22613708-22613772)
chr5 (22-85)||(14475230-14475293)
chr5 (22-85)||(19087617-19087679)
chr5 (22-86)||(970336-970400)
chr5 (22-86)||(16048283-16048347)
chr5 (22-73)||(19868698-19868749)
chr5 (22-73)||(37516343-37516394)
chr5 (22-73)||(39405962-39406013)
chr5 (22-87)||(5212920-5212985)
chr5 (22-54)||(32002045-32002077)
chr5 (22-82)||(39036608-39036668)
chr5 (22-54)||(39894979-39895011)
chr5 (22-86)||(43067419-43067483)
[»] chr6 (12 HSPs)
chr6 (22-86)||(13206952-13207016)
chr6 (22-86)||(16696015-16696079)
chr6 (22-73)||(19068783-19068834)
chr6 (22-87)||(8796247-8796312)
chr6 (22-86)||(25163362-25163426)
chr6 (114-161)||(28177738-28177785)
chr6 (32-87)||(33121750-33121805)
chr6 (20-54)||(22020472-22020506)
chr6 (22-87)||(7097871-7097936)
chr6 (22-87)||(24150939-24151004)
chr6 (22-54)||(18992101-18992133)
chr6 (22-54)||(30237365-30237397)
[»] scaffold0007 (1 HSPs)
scaffold0007 (22-89)||(15212-15279)
[»] scaffold0111 (1 HSPs)
scaffold0111 (22-72)||(38245-38295)
[»] scaffold0604 (1 HSPs)
scaffold0604 (33-86)||(1317-1370)
[»] scaffold0459 (1 HSPs)
scaffold0459 (22-54)||(12950-12982)
[»] scaffold0366 (2 HSPs)
scaffold0366 (22-54)||(10591-10623)
scaffold0366 (22-54)||(14257-14289)


Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 13 - 226
Target Start/End: Original strand, 332463 - 332676
Alignment:
Q  13 aatataattaaagtatgttaagtcaataatgtatattgtcaaatagattatctattgaggggcagagggagtattttaacaattcatcaatcattctcat 112  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||||    
T  332463 aatataatcaaagtatgttaagtcaataatgtatattgtcaaatagattatctattaaggggcagagggagtattttaataattcatccatcattctcat 332562  T
Q  113 tatctaaaatgaactaaaggcacccaacgacaccaaagtcaaaggtgctcaaatattttccatgattttcaatgtaatacctgccacttctggcttaaca 212  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  332563 tatctaaaatgaactaaaggcacccaatgacactaaagtcaaaggtgctcaaatattttccatgattttcaatgcaatacctgccacttctggcttaaca 332662  T
Q  213 tttcccttatttaa 226  Q
    ||||||||||||||    
T  332663 tttcccttatttaa 332676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 42020267 - 42020203
Alignment:
Q  21 taaagtatgttaagtcaataatgtatattgtcaaatagattatctattgaggggcagagggagta 85  Q
    ||||||||||||| |||||||||||||||||||||||| |||||||||||||| | |||||||||    
T  42020267 taaagtatgttaaatcaataatgtatattgtcaaataggttatctattgagggacggagggagta 42020203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 13 - 89
Target Start/End: Complemental strand, 43925146 - 43925070
Alignment:
Q  13 aatataattaaagtatgttaagtcaataatgtatattgtcaaatagattatctattgaggggcagagggagtatttt 89  Q
    ||||| || |||||||||||||||||||||||||||| |||||||| |  ||||||||||| | |||||||||||||    
T  43925146 aatatgatcaaagtatgttaagtcaataatgtatattatcaaataggtcgtctattgagggacggagggagtatttt 43925070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 13399170 - 13399104
Alignment:
Q  20 ttaaagtatgttaagtcaataatgtatattgtcaaatagattatctattgaggggcagagggagtat 86  Q
    |||||| |||||||||||||||||||||||||||| ||||| |||||||||||| | | ||||||||    
T  13399170 ttaaagaatgttaagtcaataatgtatattgtcaactagatcatctattgagggacggggggagtat 13399104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 87
Target Start/End: Complemental strand, 7442954 - 7442889
Alignment:
Q  22 aaagtatgttaagtcaataatgtatattgtcaaatagattatctattgaggggcagagggagtatt 87  Q
    ||||||||| ||||||||||||||||||||||| ||||| || |||| |||| | |||||||||||    
T  7442954 aaagtatgtcaagtcaataatgtatattgtcaactagatcatttattaagggacggagggagtatt 7442889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 9877146 - 9877082
Alignment:
Q  22 aaagtatgttaagtcaataatgtatattgtcaaatagattatctattgaggggcagagggagtat 86  Q
    ||||||||| ||||||||||||||||||||||| ||| | ||||||| |||| | ||||||||||    
T  9877146 aaagtatgtcaagtcaataatgtatattgtcaattaggtcatctattaagggacggagggagtat 9877082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 65
Target Start/End: Original strand, 4083405 - 4083448
Alignment:
Q  22 aaagtatgttaagtcaataatgtatattgtcaaatagattatct 65  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||    
T  4083405 aaagtatgtcaagtcaataatgtatattgtcaaatagatcatct 4083448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 85
Target Start/End: Complemental strand, 32775966 - 32775903
Alignment:
Q  22 aaagtatgttaagtcaataatgtatattgtcaaatagattatctattgaggggcagagggagta 85  Q
    ||||||||| ||||||||||||||||||||||| | | | |||||||||||| | |||||||||    
T  32775966 aaagtatgtcaagtcaataatgtatattgtcaactgggtcatctattgagggacggagggagta 32775903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 157
Target Start/End: Complemental strand, 5795477 - 5795437
Alignment:
Q  117 taaaatgaactaaaggcacccaacgacaccaaagtcaaagg 157  Q
    ||||||||||||||||||||||| ||||||||||| |||||    
T  5795477 taaaatgaactaaaggcacccaaagacaccaaagttaaagg 5795437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 87
Target Start/End: Original strand, 38963708 - 38963782
Alignment:
Q  13 aatataattaaagtatgttaagtcaataatgtatattgtcaaatagattatctattgaggggcagagggagtatt 87  Q
    ||||| || |||||| || ||||||||||| |||||||||||  |||| ||||||| |||| | |||||||||||    
T  38963708 aatatgatcaaagtacgtcaagtcaataatatatattgtcaagcagatcatctatttagggacggagggagtatt 38963782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 54
Target Start/End: Original strand, 44330580 - 44330614
Alignment:
Q  20 ttaaagtatgttaagtcaataatgtatattgtcaa 54  Q
    ||||||||||| |||||||||||||||||||||||    
T  44330580 ttaaagtatgtcaagtcaataatgtatattgtcaa 44330614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 71
Target Start/End: Complemental strand, 41463580 - 41463531
Alignment:
Q  22 aaagtatgttaagtcaataatgtatattgtcaaatagattatctattgag 71  Q
    ||||||||| || |||||||||||||||||||| ||||| || |||||||    
T  41463580 aaagtatgtcaaatcaataatgtatattgtcaactagatcatttattgag 41463531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 24283032 - 24282972
Alignment:
Q  13 aatataattaaagtatgttaagtcaataatgtatattgtcaaatagattatctattgaggg 73  Q
    |||||| | ||| ||||| || |||||||| ||||||||||| ||||| ||||||||||||    
T  24283032 aatatagtcaaaatatgtcaaatcaataatatatattgtcaactagatcatctattgaggg 24282972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 54
Target Start/End: Complemental strand, 39418083 - 39418051
Alignment:
Q  22 aaagtatgttaagtcaataatgtatattgtcaa 54  Q
    ||||||||| |||||||||||||||||||||||    
T  39418083 aaagtatgtcaagtcaataatgtatattgtcaa 39418051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 54
Target Start/End: Original strand, 42038721 - 42038753
Alignment:
Q  22 aaagtatgttaagtcaataatgtatattgtcaa 54  Q
    ||||||||| |||||||||||||||||||||||    
T  42038721 aaagtatgtcaagtcaataatgtatattgtcaa 42038753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 4e-28; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 21034601 - 21034530
Alignment:
Q  13 aatataattaaagtatgttaagtcaataatgtatattgtcaaatagattatctattgaggggcagagggagt 84  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  21034601 aatataatcaaagtatgttaagtcaataatgtatattgtcaaatagattatctattgagggacagagggagt 21034530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 4605197 - 4605261
Alignment:
Q  22 aaagtatgttaagtcaataatgtatattgtcaaatagattatctattgaggggcagagggagtat 86  Q
    ||||||||| ||||||||||||||||||||||||||| | ||||||| |||| | ||||||||||    
T  4605197 aaagtatgtaaagtcaataatgtatattgtcaaataggtcatctattaagggacggagggagtat 4605261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 87
Target Start/End: Original strand, 37281290 - 37281355
Alignment:
Q  22 aaagtatgttaagtcaataatgtatattgtcaaatagattatctattgaggggcagagggagtatt 87  Q
    ||||||||| ||||||||||| ||||||||||| ||||| ||||||| |||| | |||||||||||    
T  37281290 aaagtatgtcaagtcaataatatatattgtcaactagatcatctattaagggacggagggagtatt 37281355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 3898634 - 3898570
Alignment:
Q  22 aaagtatgttaagtcaataatgtatattgtcaaatagattatctattgaggggcagagggagtat 86  Q
    ||||||| ||||||||||||||||||||||||| ||| | || ||||||||| | ||||||||||    
T  3898634 aaagtatattaagtcaataatgtatattgtcaactaggtcatttattgagggacggagggagtat 3898570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 16265231 - 16265295
Alignment:
Q  22 aaagtatgttaagtcaataatgtatattgtcaaatagattatctattgaggggcagagggagtat 86  Q
    ||||||| ||||||||||||||||||||||||| ||| | || ||||||||| | ||||||||||    
T  16265231 aaagtatattaagtcaataatgtatattgtcaactaggtcatttattgagggacggagggagtat 16265295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 16266360 - 16266424
Alignment:
Q  22 aaagtatgttaagtcaataatgtatattgtcaaatagattatctattgaggggcagagggagtat 86  Q
    ||||||| ||||||||||||||||||||||||| ||| | || ||||||||| | ||||||||||    
T  16266360 aaagtatattaagtcaataatgtatattgtcaactaggtcatttattgagggacggagggagtat 16266424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 26441832 - 26441896
Alignment:
Q  22 aaagtatgttaagtcaataatgtatattgtcaaatagattatctattgaggggcagagggagtat 86  Q
    ||||||| ||||||||||||||||||||||||| ||| | || ||||||||| | ||||||||||    
T  26441832 aaagtatattaagtcaataatgtatattgtcaactaggtcatttattgagggacggagggagtat 26441896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 43680268 - 43680332
Alignment:
Q  22 aaagtatgttaagtcaataatgtatattgtcaaatagattatctattgaggggcagagggagtat 86  Q
    ||||||| ||||||||||||||||||||||||| ||| | || ||||||||| | ||||||||||    
T  43680268 aaagtatattaagtcaataatgtatattgtcaactaggtcatttattgagggacggagggagtat 43680332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 50481474 - 50481538
Alignment:
Q  22 aaagtatgttaagtcaataatgtatattgtcaaatagattatctattgaggggcagagggagtat 86  Q
    ||||||||||| |||||||||||||||||||||||||   |||||||||||| |  |||||||||    
T  50481474 aaagtatgttaggtcaataatgtatattgtcaaataggccatctattgagggacgtagggagtat 50481538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 22 - 72
Target Start/End: Original strand, 47222413 - 47222463
Alignment:
Q  22 aaagtatgttaagtcaataatgtatattgtcaaatagattatctattgagg 72  Q
    |||||||||||||||||||||||||||| |||||||| | || ||||||||    
T  47222413 aaagtatgttaagtcaataatgtatattatcaaataggtcatttattgagg 47222463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 175
Target Start/End: Original strand, 43655747 - 43655808
Alignment:
Q  114 atctaaaatgaactaaaggcacccaacgacaccaaagtcaaaggtgctcaaatattttccat 175  Q
    ||||||||||||||||||||| |||| ||||||||||  |||||  | ||||||||||||||    
T  43655747 atctaaaatgaactaaaggcatccaaagacaccaaagctaaaggcacccaaatattttccat 43655808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 85
Target Start/End: Complemental strand, 38737450 - 38737378
Alignment:
Q  13 aatataattaaagtatgttaagtcaataatgtatattgtcaaatagattatctattgaggggcagagggagta 85  Q
    |||| ||| |||| |||||||||||||| | || |||||||||||||| |||||||| ||| | |||||||||    
T  38737450 aatacaatcaaagaatgttaagtcaatattatacattgtcaaatagatcatctattgtgggacggagggagta 38737378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 57
Target Start/End: Original strand, 3529374 - 3529409
Alignment:
Q  22 aaagtatgttaagtcaataatgtatattgtcaaata 57  Q
    ||||||||||||||||||||| ||||||||||||||    
T  3529374 aaagtatgttaagtcaataatatatattgtcaaata 3529409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 57
Target Start/End: Original strand, 48376343 - 48376378
Alignment:
Q  22 aaagtatgttaagtcaataatgtatattgtcaaata 57  Q
    ||||||| ||||||||||||||||||||||||||||    
T  48376343 aaagtatcttaagtcaataatgtatattgtcaaata 48376378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 54
Target Start/End: Original strand, 14075929 - 14075963
Alignment:
Q  20 ttaaagtatgttaagtcaataatgtatattgtcaa 54  Q
    ||||| |||||||||||||||||||||||||||||    
T  14075929 ttaaaatatgttaagtcaataatgtatattgtcaa 14075963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 38737904 - 38737847
Alignment:
Q  13 aatataattaaagtatgttaagtcaata--atgtatattgtcaaatagattatctatt 68  Q
    ||||| ||||||||||||||| ||||||  || |||||||||||||| ||||||||||    
T  38737904 aatatgattaaagtatgttaaatcaataatatatatattgtcaaataaattatctatt 38737847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 54
Target Start/End: Original strand, 1849899 - 1849931
Alignment:
Q  22 aaagtatgttaagtcaataatgtatattgtcaa 54  Q
    ||||||||| |||||||||||||||||||||||    
T  1849899 aaagtatgtcaagtcaataatgtatattgtcaa 1849931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 54
Target Start/End: Complemental strand, 16751512 - 16751484
Alignment:
Q  26 tatgttaagtcaataatgtatattgtcaa 54  Q
    |||||||||||||||||||||||||||||    
T  16751512 tatgttaagtcaataatgtatattgtcaa 16751484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 24982549 - 24982613
Alignment:
Q  22 aaagtatgttaagtcaataatgtatattgtcaaatagattatctattgaggggcagagggagtat 86  Q
    ||||||| ||||||||||||| |||||||||||  || | || ||||||||| | ||||||||||    
T  24982549 aaagtatattaagtcaataatatatattgtcaacaaggtcatttattgagggacggagggagtat 24982613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 25531976 - 25532040
Alignment:
Q  22 aaagtatgttaagtcaataatgtatattgtcaaatagattatctattgaggggcagagggagtat 86  Q
    ||||||| | ||||||||||||||||||||||| ||| | || |||| |||| | ||||||||||    
T  25531976 aaagtatatcaagtcaataatgtatattgtcaactaggtcatttattaagggacggagggagtat 25532040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 86
Target Start/End: Complemental strand, 32988408 - 32988348
Alignment:
Q  26 tatgttaagtcaataatgtatattgtcaaatagattatctattgaggggcagagggagtat 86  Q
    ||||| ||||||||||||||||||||||| | ||| || |||| |||| | ||||||||||    
T  32988408 tatgtcaagtcaataatgtatattgtcaactggatcatttattaagggacggagggagtat 32988348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 54
Target Start/End: Original strand, 38458928 - 38458960
Alignment:
Q  22 aaagtatgttaagtcaataatgtatattgtcaa 54  Q
    ||||||||| |||||||||||||||||||||||    
T  38458928 aaagtatgtcaagtcaataatgtatattgtcaa 38458960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 10658175 - 10658223
Alignment:
Q  22 aaagtatgttaagtcaataatgtatattgtcaaatagattatctattga 70  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||    
T  10658175 aaagtatgttaagtcaataatgtatattgtcaaatagatcatctattga 10658223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 22 - 85
Target Start/End: Original strand, 6471043 - 6471106
Alignment:
Q  22 aaagtatgttaagtcaataatgtatattgtcaaatagattatctattgaggggcagagggagta 85  Q
    ||||||||| ||||||||||||||||||||||| ||| | ||||||| |||| |||||||||||    
T  6471043 aaagtatgtcaagtcaataatgtatattgtcaactaggtcatctattaagggacagagggagta 6471106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 13 - 72
Target Start/End: Complemental strand, 20167649 - 20167590
Alignment:
Q  13 aatataattaaagtatgttaagtcaataatgtatattgtcaaatagattatctattgagg 72  Q
    ||||| || ||| ||||||||||||||| ||||||||||||||||||| |||||||||||    
T  20167649 aatattatcaaaatatgttaagtcaatagtgtatattgtcaaatagatcatctattgagg 20167590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 18809474 - 18809538
Alignment:
Q  22 aaagtatgttaagtcaataatgtatattgtcaaatagattatctattgaggggcagagggagtat 86  Q
    ||||||| ||||||||||||||||||||||||| ||| | || ||||||||| | ||||||||||    
T  18809474 aaagtatattaagtcaataatgtatattgtcaactaggtcatttattgagggacggagggagtat 18809538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 44123868 - 44123916
Alignment:
Q  22 aaagtatgttaagtcaataatgtatattgtcaaatagattatctattga 70  Q
    ||||||||||||||||| ||||||||||||||||||| | |||||||||    
T  44123868 aaagtatgttaagtcaacaatgtatattgtcaaataggtcatctattga 44123916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 85
Target Start/End: Original strand, 12893726 - 12893789
Alignment:
Q  22 aaagtatgttaagtcaataatgtatattgtcaaatagattatctattgaggggcagagggagta 85  Q
    |||||||||||||||||||||| |||||||||||||| | || || |||||| | |||||||||    
T  12893726 aaagtatgttaagtcaataatgcatattgtcaaataggtcatttactgagggacggagggagta 12893789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 86
Target Start/End: Complemental strand, 31127877 - 31127804
Alignment:
Q  13 aatataattaaagtatgttaagtcaataatgtatattgtcaaatagattatctattgaggggcagagggagtat 86  Q
    ||||| || ||||||| ||||||||||||| ||||||||||| ||| | || ||||||||| | ||||||||||    
T  31127877 aatatgatcaaagtatattaagtcaataatatatattgtcaactaggtcatttattgagggacggagggagtat 31127804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 71
Target Start/End: Original strand, 45253944 - 45253993
Alignment:
Q  22 aaagtatgttaagtcaataatgtatattgtcaaatagattatctattgag 71  Q
    ||||||||| ||||||||||||||||||||||| ||| | ||||||||||    
T  45253944 aaagtatgtcaagtcaataatgtatattgtcaactaggtcatctattgag 45253993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 58
Target Start/End: Complemental strand, 886132 - 886096
Alignment:
Q  22 aaagtatgttaagtcaataatgtatattgtcaaatag 58  Q
    |||||||||||||| ||||||||||||||||||||||    
T  886132 aaagtatgttaagttaataatgtatattgtcaaatag 886096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 85
Target Start/End: Original strand, 14522577 - 14522640
Alignment:
Q  22 aaagtatgttaagtcaataatgtatattgtcaaatagattatctattgaggggcagagggagta 85  Q
    ||||||| | ||||||||||||||||||||||| ||| | ||||||| |||| | |||||||||    
T  14522577 aaagtatatcaagtcaataatgtatattgtcaactaggtcatctattaagggacggagggagta 14522640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 85
Target Start/End: Original strand, 30380728 - 30380791
Alignment:
Q  22 aaagtatgttaagtcaataatgtatattgtcaaatagattatctattgaggggcagagggagta 85  Q
    ||||||||| ||||||||||||||||||||||| | ||| || |||| |||| | |||||||||    
T  30380728 aaagtatgtcaagtcaataatgtatattgtcaactggatcatttattaagggacggagggagta 30380791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 73
Target Start/End: Original strand, 3383608 - 3383657
Alignment:
Q  24 agtatgttaagtcaataatgtatattgtcaaatagattatctattgaggg 73  Q
    ||||| ||||||||||||| |||||||||||||| || ||||||| ||||    
T  3383608 agtatattaagtcaataatatatattgtcaaatatatcatctattaaggg 3383657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 87
Target Start/End: Complemental strand, 8350943 - 8350878
Alignment:
Q  22 aaagtatgttaagtcaataatgtatattgtcaaatagattatctattgaggggcagagggagtatt 87  Q
    ||||||||| ||||||||||||||||||||||| ||| | || |||| ||||   |||||||||||    
T  8350943 aaagtatgtcaagtcaataatgtatattgtcaactaggtcatttattaagggatggagggagtatt 8350878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 54
Target Start/End: Complemental strand, 3293164 - 3293132
Alignment:
Q  22 aaagtatgttaagtcaataatgtatattgtcaa 54  Q
    ||||||||| |||||||||||||||||||||||    
T  3293164 aaagtatgtcaagtcaataatgtatattgtcaa 3293132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 54
Target Start/End: Original strand, 37710097 - 37710129
Alignment:
Q  22 aaagtatgttaagtcaataatgtatattgtcaa 54  Q
    ||||||||| |||||||||||||||||||||||    
T  37710097 aaagtatgtcaagtcaataatgtatattgtcaa 37710129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 54
Target Start/End: Original strand, 40013849 - 40013881
Alignment:
Q  22 aaagtatgttaagtcaataatgtatattgtcaa 54  Q
    ||||||||| |||||||||||||||||||||||    
T  40013849 aaagtatgtcaagtcaataatgtatattgtcaa 40013881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 13 - 88
Target Start/End: Complemental strand, 18360045 - 18359970
Alignment:
Q  13 aatataattaaagtatgttaagtcaataatgtatattgtcaaatagattatctattgaggggcagagggagtattt 88  Q
    |||||||| ||||||||| ||||||||||||||||||||||| ||| | ||||||| |||| | ||||||||||||    
T  18360045 aatataatcaaagtatgtcaagtcaataatgtatattgtcaactaggtcatctattaagggacggagggagtattt 18359970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 13 - 88
Target Start/End: Original strand, 36602883 - 36602958
Alignment:
Q  13 aatataattaaagtatgttaagtcaataatgtatattgtcaaatagattatctattgaggggcagagggagtattt 88  Q
    |||||||| ||||||||| ||||||||||||||||||||||| ||| | ||||||| |||| | ||||||||||||    
T  36602883 aatataatcaaagtatgtcaagtcaataatgtatattgtcaactaggtcatctattaagggacggagggagtattt 36602958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 55190629 - 55190565
Alignment:
Q  22 aaagtatgttaagtcaataatgtatattgtcaaatagattatctattgaggggcagagggagtat 86  Q
    ||||||||| ||||||||||||||||||||||| ||| ||||||||| |||| | ||||||||||    
T  55190629 aaagtatgtcaagtcaataatgtatattgtcaactaggttatctattaagggacggagggagtat 55190565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 22 - 87
Target Start/End: Original strand, 50033218 - 50033284
Alignment:
Q  22 aaagtatgttaagtcaataatgtatattgtcaaatagattatctattg-aggggcagagggagtatt 87  Q
    ||||||||||||||||||||||||||| ||||||||| | |||||||| |||| ||||| |||||||    
T  50033218 aaagtatgttaagtcaataatgtatatcgtcaaataggtcatctattgaagggacagagagagtatt 50033284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 71
Target Start/End: Complemental strand, 51737009 - 51736968
Alignment:
Q  30 ttaagtcaataatgtatattgtcaaatagattatctattgag 71  Q
    ||||||||||||||||||||||||||||||| ||||||||||    
T  51737009 ttaagtcaataatgtatattgtcaaatagatcatctattgag 51736968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 19652328 - 19652268
Alignment:
Q  13 aatataattaaagtatgttaagtcaataatgtatattgtcaaatagattatctattgaggg 73  Q
    |||||| | ||||||||| ||||||||||||||||||||||| ||||| ||||||| ||||    
T  19652328 aatatagtcaaagtatgtcaagtcaataatgtatattgtcaactagatcatctattaaggg 19652268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 50035734 - 50035782
Alignment:
Q  22 aaagtatgttaagtcaataatgtatattgtcaaatagattatctattga 70  Q
    ||||||||||||||||| ||||||||||||||||||| | |||||||||    
T  50035734 aaagtatgttaagtcaacaatgtatattgtcaaataggtcatctattga 50035782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 85
Target Start/End: Original strand, 1377229 - 1377292
Alignment:
Q  22 aaagtatgttaagtcaataatgtatattgtcaaatagattatctattgaggggcagagggagta 85  Q
    ||||||||| ||||||||||||||||||||||| | ||| || |||| |||| |||||||||||    
T  1377229 aaagtatgtcaagtcaataatgtatattgtcaactggatcatttattaagggacagagggagta 1377292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 85
Target Start/End: Complemental strand, 23603710 - 23603647
Alignment:
Q  22 aaagtatgttaagtcaataatgtatattgtcaaatagattatctattgaggggcagagggagta 85  Q
    ||||||||| ||||||||||||||||||||||| ||| | |||||||||||  | |||||||||    
T  23603710 aaagtatgtcaagtcaataatgtatattgtcaactaggtcatctattgaggaacggagggagta 23603647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 89
Target Start/End: Complemental strand, 39260195 - 39260128
Alignment:
Q  22 aaagtatgttaagtcaataatgtatattgtcaaatagattatctattgaggggcagagggagtatttt 89  Q
    ||||||||| ||||||||||||||||||||||| ||| | ||||||| |||| | |||| ||||||||    
T  39260195 aaagtatgtcaagtcaataatgtatattgtcaactaggtcatctattaagggacggaggaagtatttt 39260128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 91
Target Start/End: Original strand, 4209557 - 4209626
Alignment:
Q  22 aaagtatgttaagtcaataatgtatattgtcaaatagattatctattgaggggcagagggagtattttaa 91  Q
    ||||||||| || |||||||||||||||||||| ||| | ||||||| |||| | |||||||||| ||||    
T  4209557 aaagtatgtcaaatcaataatgtatattgtcaactaggtcatctattaagggacggagggagtatgttaa 4209626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 54
Target Start/End: Original strand, 6494788 - 6494820
Alignment:
Q  22 aaagtatgttaagtcaataatgtatattgtcaa 54  Q
    |||||||||||||||||||||||||||||||||    
T  6494788 aaagtatgttaagtcaataatgtatattgtcaa 6494820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 82
Target Start/End: Complemental strand, 19525777 - 19525717
Alignment:
Q  22 aaagtatgttaagtcaataatgtatattgtcaaatagattatctattgaggggcagaggga 82  Q
    |||||||||||||||||| |||||||||||||| ||| | || ||||||||| | ||||||    
T  19525777 aaagtatgttaagtcaatgatgtatattgtcaactaggtcatttattgagggacggaggga 19525717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 25644557 - 25644621
Alignment:
Q  22 aaagtatgttaagtcaataatgtatattgtcaaatagattatctattgaggggcagagggagtat 86  Q
    ||||||| ||||||||||||||||||||||||| ||| | || |||||| || | ||||||||||    
T  25644557 aaagtatattaagtcaataatgtatattgtcaactaggtcatttattgaaggacggagggagtat 25644621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 58
Target Start/End: Original strand, 39194110 - 39194146
Alignment:
Q  22 aaagtatgttaagtcaataatgtatattgtcaaatag 58  Q
    ||||||||||||||||||| |||||||||||||||||    
T  39194110 aaagtatgttaagtcaatattgtatattgtcaaatag 39194146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 45198403 - 45198339
Alignment:
Q  22 aaagtatgttaagtcaataatgtatattgtcaaatagattatctattgaggggcagagggagtat 86  Q
    ||||||| ||||||||||||||||||||||||| ||| | || |||| |||| | ||||||||||    
T  45198403 aaagtatattaagtcaataatgtatattgtcaactaggtcatttattaagggacggagggagtat 45198339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 73
Target Start/End: Complemental strand, 5123220 - 5123169
Alignment:
Q  22 aaagtatgttaagtcaataatgtatattgtcaaatagattatctattgaggg 73  Q
    ||||||||| ||||||||||||||||||||||| ||| | ||||||| ||||    
T  5123220 aaagtatgtcaagtcaataatgtatattgtcaactaggtcatctattaaggg 5123169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 85
Target Start/End: Complemental strand, 7738882 - 7738819
Alignment:
Q  22 aaagtatgttaagtcaataatgtatattgtcaaatagattatctattgaggggcagagggagta 85  Q
    ||||||||| ||||||||||||||||||||||| ||| | || |||| |||| | |||||||||    
T  7738882 aaagtatgtcaagtcaataatgtatattgtcaactaggtcatttattaagggacggagggagta 7738819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 88
Target Start/End: Original strand, 46803830 - 46803896
Alignment:
Q  22 aaagtatgttaagtcaataatgtatattgtcaaatagattatctattgaggggcagagggagtattt 88  Q
    ||||||| | |||||||||||| |||||||||| ||| | || |||| |||| ||||||||||||||    
T  46803830 aaagtatatcaagtcaataatgcatattgtcaactaggtcatttattaagggacagagggagtattt 46803896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 54
Target Start/End: Complemental strand, 9965478 - 9965437
Alignment:
Q  13 aatataattaaagtatgttaagtcaataatgtatattgtcaa 54  Q
    |||||| ||||||||||| | |||||||||||||||||||||    
T  9965478 aatatagttaaagtatgtcaggtcaataatgtatattgtcaa 9965437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 51
Target Start/End: Complemental strand, 19731229 - 19731200
Alignment:
Q  22 aaagtatgttaagtcaataatgtatattgt 51  Q
    ||||||||||||||||||||||||||||||    
T  19731229 aaagtatgttaagtcaataatgtatattgt 19731200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 54
Target Start/End: Complemental strand, 3443450 - 3443418
Alignment:
Q  22 aaagtatgttaagtcaataatgtatattgtcaa 54  Q
    ||||||||| |||||||||||||||||||||||    
T  3443450 aaagtatgtcaagtcaataatgtatattgtcaa 3443418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 54
Target Start/End: Original strand, 4264332 - 4264364
Alignment:
Q  22 aaagtatgttaagtcaataatgtatattgtcaa 54  Q
    ||||||||| |||||||||||||||||||||||    
T  4264332 aaagtatgtcaagtcaataatgtatattgtcaa 4264364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 6923003 - 6922939
Alignment:
Q  22 aaagtatgttaagtcaataatgtatattgtcaaatagattatctattgaggggcagagggagtat 86  Q
    ||||||| |||||||||||||||||||| |||| ||| | || ||||||||  | ||||||||||    
T  6923003 aaagtatattaagtcaataatgtatattatcaactaggtcatttattgaggaacggagggagtat 6922939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 58
Target Start/End: Original strand, 19631507 - 19631543
Alignment:
Q  22 aaagtatgttaagtcaataatgtatattgtcaaatag 58  Q
    ||||||||||||||| |||||||||||| ||||||||    
T  19631507 aaagtatgttaagtctataatgtatattatcaaatag 19631543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 54
Target Start/End: Complemental strand, 46212413 - 46212381
Alignment:
Q  22 aaagtatgttaagtcaataatgtatattgtcaa 54  Q
    ||||||||| |||||||||||||||||||||||    
T  46212413 aaagtatgtcaagtcaataatgtatattgtcaa 46212381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 58
Target Start/End: Original strand, 55014457 - 55014493
Alignment:
Q  22 aaagtatgttaagtcaataatgtatattgtcaaatag 58  Q
    |||||||||||||||||||||||||||| | ||||||    
T  55014457 aaagtatgttaagtcaataatgtatattatgaaatag 55014493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 22 - 73
Target Start/End: Complemental strand, 3547483 - 3547432
Alignment:
Q  22 aaagtatgttaagtcaataatgtatattgtcaaatagattatctattgaggg 73  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  3547483 aaagtatgttaagtcaataatgtatattgtcaaataggtcatctattgaggg 3547432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 32951199 - 32951135
Alignment:
Q  22 aaagtatgttaagtcaataatgtatattgtcaaatagattatctattgaggggcagagggagtat 86  Q
    ||||||| ||||||||||||||||||||||||| ||||| || ||||||||| | ||||||||||    
T  32951199 aaagtatattaagtcaataatgtatattgtcaactagatcatttattgagggacggagggagtat 32951135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 13 - 87
Target Start/End: Original strand, 36665207 - 36665281
Alignment:
Q  13 aatataattaaagtatgttaagtcaataatgtatattgtcaaatagattatctattgaggggcagagggagtatt 87  Q
    |||||| | |||||||||||||| |||||||||||||||||||||| | ||||||| |||| | ||||| |||||    
T  36665207 aatatagtcaaagtatgttaagttaataatgtatattgtcaaataggtcatctattaagggacggagggggtatt 36665281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 85
Target Start/End: Original strand, 46483748 - 46483809
Alignment:
Q  24 agtatgttaagtcaataatgtatattgtcaaatagattatctattgaggggcagagggagta 85  Q
    ||||||| || |||||||||||||||||||| ||||| ||||||| |||| |||||||||||    
T  46483748 agtatgtcaaatcaataatgtatattgtcaactagatcatctattaagggacagagggagta 46483809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 85
Target Start/End: Original strand, 53066568 - 53066631
Alignment:
Q  22 aaagtatgttaagtcaataatgtatattgtcaaatagattatctattgaggggcagagggagta 85  Q
    ||||||||| ||||||||||| ||||||||||| ||||| ||||||| |||| | |||||||||    
T  53066568 aaagtatgtcaagtcaataatatatattgtcaactagatcatctattaagggacggagggagta 53066631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 87
Target Start/End: Complemental strand, 10571207 - 10571142
Alignment:
Q  22 aaagtatgttaagtcaataatgtatattgtcaaatagattatctattgaggggcagagggagtatt 87  Q
    ||||||||| ||||||||||||||||||||||| | | |||| |||| |||| | |||||||||||    
T  10571207 aaagtatgtcaagtcaataatgtatattgtcaactgggttatttattaagggacggagggagtatt 10571142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 71
Target Start/End: Original strand, 15503221 - 15503270
Alignment:
Q  22 aaagtatgttaagtcaataatgtatattgtcaaatagattatctattgag 71  Q
    ||||||| |||||||||||||||||||| |||| ||||| ||||||||||    
T  15503221 aaagtatattaagtcaataatgtatattatcaactagatcatctattgag 15503270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 35717914 - 35717870
Alignment:
Q  26 tatgttaagtcaataatgtatattgtcaaatagattatctattga 70  Q
    ||||||||||||||||||||||||||||||||  | |||||||||    
T  35717914 tatgttaagtcaataatgtatattgtcaaatacgtcatctattga 35717870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 85
Target Start/End: Original strand, 28690707 - 28690758
Alignment:
Q  34 gtcaataatgtatattgtcaaatagattatctattgaggggcagagggagta 85  Q
    ||||||||| ||||||||||||||| | |||||||||||| | |||||||||    
T  28690707 gtcaataatatatattgtcaaataggtcatctattgagggacggagggagta 28690758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 87
Target Start/End: Complemental strand, 29728151 - 29728096
Alignment:
Q  32 aagtcaataatgtatattgtcaaatagattatctattgaggggcagagggagtatt 87  Q
    ||||||||||||||||||||||| ||||| || |||| |||| | |||||||||||    
T  29728151 aagtcaataatgtatattgtcaactagatcatttattaagggacggagggagtatt 29728096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 87
Target Start/End: Original strand, 47638253 - 47638318
Alignment:
Q  22 aaagtatgttaagtcaataatgtatattgtcaaatagattatctattgaggggcagagggagtatt 87  Q
    ||||||||| || |||||||||||||||||||| ||| | ||||||| |||| | |||||| ||||    
T  47638253 aaagtatgtcaaatcaataatgtatattgtcaattaggtcatctattaagggacggagggaatatt 47638318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 90
Target Start/End: Original strand, 49058045 - 49058122
Alignment:
Q  13 aatataattaaagtatgttaagtcaataatgtatattgtcaaatagattatctattgaggggcagagggagtatttta 90  Q
    ||||| || |||||| || ||||||||||| |||||||||||| || | ||||||| |||| | ||||||||| ||||    
T  49058045 aatatgatcaaagtacgtcaagtcaataatatatattgtcaaagaggtcatctatttagggacggagggagtaattta 49058122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 4238557 - 4238493
Alignment:
Q  22 aaagtatgttaagtcaataatgtatattgtcaaatagattatctattgaggggcagagggagtat 86  Q
    ||||||| |||||| |||||||||||||||||| ||  | || ||||||||| | ||||||||||    
T  4238557 aaagtatattaagttaataatgtatattgtcaactaagtcatttattgagggacggagggagtat 4238493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 86
Target Start/End: Original strand, 10435329 - 10435381
Alignment:
Q  34 gtcaataatgtatattgtcaaatagattatctattgaggggcagagggagtat 86  Q
    ||||||||||||||||||||| ||| | || ||||||||| | ||||||||||    
T  10435329 gtcaataatgtatattgtcaactaggtcatttattgagggacggagggagtat 10435381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 54
Target Start/End: Original strand, 21907194 - 21907226
Alignment:
Q  22 aaagtatgttaagtcaataatgtatattgtcaa 54  Q
    ||||||||| |||||||||||||||||||||||    
T  21907194 aaagtatgtcaagtcaataatgtatattgtcaa 21907226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 54
Target Start/End: Complemental strand, 32285239 - 32285207
Alignment:
Q  22 aaagtatgttaagtcaataatgtatattgtcaa 54  Q
    ||||||||| |||||||||||||||||||||||    
T  32285239 aaagtatgtcaagtcaataatgtatattgtcaa 32285207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 54
Target Start/End: Original strand, 38492249 - 38492281
Alignment:
Q  22 aaagtatgttaagtcaataatgtatattgtcaa 54  Q
    |||||||||||| ||||||||||||||||||||    
T  38492249 aaagtatgttaaatcaataatgtatattgtcaa 38492281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 86
Target Start/End: Original strand, 45167501 - 45167561
Alignment:
Q  26 tatgttaagtcaataatgtatattgtcaaatagattatctattgaggggcagagggagtat 86  Q
    ||||| ||||||||||||||||||||||| | ||| || |||| |||| | ||||||||||    
T  45167501 tatgtcaagtcaataatgtatattgtcaactggatcatatattaagggacggagggagtat 45167561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 54
Target Start/End: Complemental strand, 54840191 - 54840159
Alignment:
Q  22 aaagtatgttaagtcaataatgtatattgtcaa 54  Q
    ||||||||| |||||||||||||||||||||||    
T  54840191 aaagtatgtcaagtcaataatgtatattgtcaa 54840159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 13 - 72
Target Start/End: Complemental strand, 44389358 - 44389299
Alignment:
Q  13 aatataattaaagtatgttaagtcaataatgtatattgtcaaatagattatctattgagg 72  Q
    ||||| || ||| ||||||||||||||| ||||||||||||||||||| |||||||||||    
T  44389358 aatattatcaaaatatgttaagtcaatagtgtatattgtcaaatagatcatctattgagg 44389299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 10464178 - 10464114
Alignment:
Q  22 aaagtatgttaagtcaataatgtatattgtcaaatagattatctattgaggggcagagggagtat 86  Q
    ||||||| ||||||||||||||||||||||||| ||| | || ||||||||| | ||||||||||    
T  10464178 aaagtatattaagtcaataatgtatattgtcaactaggtcatttattgagggacggagggagtat 10464114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 48531520 - 48531584
Alignment:
Q  22 aaagtatgttaagtcaataatgtatattgtcaaatagattatctattgaggggcagagggagtat 86  Q
    ||||||||| ||||||||||||||||||||||| ||| | ||||||| |||| | ||||||||||    
T  48531520 aaagtatgtcaagtcaataatgtatattgtcaactaggtcatctattaagggacggagggagtat 48531584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 85
Target Start/End: Complemental strand, 24151640 - 24151581
Alignment:
Q  26 tatgttaagtcaataatgtatattgtcaaatagattatctattgaggggcagagggagta 85  Q
    ||||||||||||||||||||||||||||||||| | | ||||| |||| | |||||||||    
T  24151640 tatgttaagtcaataatgtatattgtcaaataggtcacctattaagggacggagggagta 24151581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 85
Target Start/End: Complemental strand, 34478071 - 34478008
Alignment:
Q  22 aaagtatgttaagtcaataatgtatattgtcaaatagattatctattgaggggcagagggagta 85  Q
    |||||||||||| |||||||||||||||||||| ||| | || ||||||||| | |||||||||    
T  34478071 aaagtatgttaaatcaataatgtatattgtcaactaggtcatttattgagggacggagggagta 34478008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 71
Target Start/End: Complemental strand, 18795203 - 18795154
Alignment:
Q  22 aaagtatgttaagtcaataatgtatattgtcaaatagattatctattgag 71  Q
    ||||||||||||||||||||| ||||||||||||||  | ||||||||||    
T  18795203 aaagtatgttaagtcaataatatatattgtcaaataagtgatctattgag 18795154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 86
Target Start/End: Complemental strand, 35500819 - 35500746
Alignment:
Q  13 aatataattaaagtatgttaagtcaataatgtatattgtcaaatagattatctattgaggggcagagggagtat 86  Q
    |||||| | ||||||| ||||||||||||||||||||||||| ||| | |  ||||||||| | ||||||||||    
T  35500819 aatatagtcaaagtatcttaagtcaataatgtatattgtcaactaggtcaattattgagggacggagggagtat 35500746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 37231626 - 37231562
Alignment:
Q  22 aaagtatgttaagtcaataatgtatattgtcaaatagattatctattgaggggcagagggagtat 86  Q
    ||||||| ||||||||||||||||||||||||| ||| |  | ||||||||| | ||||||||||    
T  37231626 aaagtatattaagtcaataatgtatattgtcaactaggtcgtttattgagggacggagggagtat 37231562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 85
Target Start/End: Original strand, 47538124 - 47538184
Alignment:
Q  25 gtatgttaagtcaataatgtatattgtcaaatagattatctattgaggggcagagggagta 85  Q
    |||||| ||||| ||||||||||||||||| ||| | ||||||| |||||| |||||||||    
T  47538124 gtatgtcaagtccataatgtatattgtcaactaggtcatctattaaggggcggagggagta 47538184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 47713565 - 47713501
Alignment:
Q  22 aaagtatgttaagtcaataatgtatattgtcaaatagattatctattgaggggcagagggagtat 86  Q
    ||||||||| ||||||||||||||||||||||| | | | || |||| |||| ||||||||||||    
T  47713565 aaagtatgtcaagtcaataatgtatattgtcaactgggtcatttattaagggacagagggagtat 47713501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 85
Target Start/End: Complemental strand, 31466421 - 31466358
Alignment:
Q  22 aaagtatgttaagtcaataatgtatattgtcaaatagattatctattgaggggcagagggagta 85  Q
    ||||||||| ||||||||||||||||||||||| ||| | || |||| |||| | |||||||||    
T  31466421 aaagtatgtcaagtcaataatgtatattgtcaactaggtcatttattaagggacggagggagta 31466358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 60
Target Start/End: Original strand, 46657831 - 46657869
Alignment:
Q  22 aaagtatgttaagtcaataatgtatattgtcaaatagat 60  Q
    |||| |||||||||||||||||||| |||||||||||||    
T  46657831 aaagaatgttaagtcaataatgtatgttgtcaaatagat 46657869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 54
Target Start/End: Complemental strand, 4612150 - 4612118
Alignment:
Q  22 aaagtatgttaagtcaataatgtatattgtcaa 54  Q
    ||||||||| |||||||||||||||||||||||    
T  4612150 aaagtatgtcaagtcaataatgtatattgtcaa 4612118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 54
Target Start/End: Complemental strand, 23474032 - 23474000
Alignment:
Q  22 aaagtatgttaagtcaataatgtatattgtcaa 54  Q
    ||||||||| |||||||||||||||||||||||    
T  23474032 aaagtatgtaaagtcaataatgtatattgtcaa 23474000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 54
Target Start/End: Complemental strand, 44479784 - 44479752
Alignment:
Q  22 aaagtatgttaagtcaataatgtatattgtcaa 54  Q
    ||||||||| |||||||||||||||||||||||    
T  44479784 aaagtatgtcaagtcaataatgtatattgtcaa 44479752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 22 - 85
Target Start/End: Original strand, 2864152 - 2864215
Alignment:
Q  22 aaagtatgttaagtcaataatgtatattgtcaaatagattatctattgaggggcagagggagta 85  Q
    |||||||||||||||||||||||||||| |||||||  | |||||||||||| |||| ||||||    
T  2864152 aaagtatgttaagtcaataatgtatattatcaaatatgtcatctattgagggacagatggagta 2864215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 22 - 85
Target Start/End: Complemental strand, 37843638 - 37843575
Alignment:
Q  22 aaagtatgttaagtcaataatgtatattgtcaaatagattatctattgaggggcagagggagta 85  Q
    ||||||||| ||||||||||||||||||||||| ||| | |||||||||||| | |||||||||    
T  37843638 aaagtatgtcaagtcaataatgtatattgtcaagtaggtcatctattgagggacggagggagta 37843575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 4299896 - 4299832
Alignment:
Q  22 aaagtatgttaagtcaataatgtatattgtcaaatagattatctattgaggggcagagggagtat 86  Q
    ||||||| ||||||||||||||||||||||||| ||| | || ||||||||| | ||||||||||    
T  4299896 aaagtatattaagtcaataatgtatattgtcaactaggtcatttattgagggacggagggagtat 4299832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 22613772 - 22613708
Alignment:
Q  22 aaagtatgttaagtcaataatgtatattgtcaaatagattatctattgaggggcagagggagtat 86  Q
    ||||||| ||||||||||||||||||||||||| ||| | || ||||||||| | ||||||||||    
T  22613772 aaagtatattaagtcaataatgtatattgtcaactaggtcatttattgagggacggagggagtat 22613708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 85
Target Start/End: Complemental strand, 14475293 - 14475230
Alignment:
Q  22 aaagtatgttaagtcaataatgtatattgtcaaatagattatctattgaggggcagagggagta 85  Q
    ||||||||| ||||||||||||||||||||||| ||| | ||||||||| || | |||||||||    
T  14475293 aaagtatgtcaagtcaataatgtatattgtcaactaggtcatctattgaaggacggagggagta 14475230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 85
Target Start/End: Complemental strand, 19087679 - 19087617
Alignment:
Q  22 aaagtatgttaagtcaataatgtatattgtcaaatagattatctattgaggggcagagggagta 85  Q
    ||||||| |||| ||||||||||||||||||||||||  ||||||||||||||| || ||||||    
T  19087679 aaagtatattaaatcaataatgtatattgtcaaatag-gtatctattgaggggctgatggagta 19087617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 970336 - 970400
Alignment:
Q  22 aaagtatgttaagtcaataatgtatattgtcaaatagattatctattgaggggcagagggagtat 86  Q
    ||||||| |||||| |||||||||||||||||| ||| | || ||||||||| | ||||||||||    
T  970336 aaagtatattaagttaataatgtatattgtcaactaggtcatttattgagggacggagggagtat 970400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 16048283 - 16048347
Alignment:
Q  22 aaagtatgttaagtcaataatgtatattgtcaaatagattatctattgaggggcagagggagtat 86  Q
    ||||||| ||||||||||||||||||||||||| ||| | || ||||||||| | || |||||||    
T  16048283 aaagtatattaagtcaataatgtatattgtcaactaggtcatttattgagggacggacggagtat 16048347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 73
Target Start/End: Complemental strand, 19868749 - 19868698
Alignment:
Q  22 aaagtatgttaagtcaataatgtatattgtcaaatagattatctattgaggg 73  Q
    |||||||||||||||||||||||||| | |||||||  | ||||||||||||    
T  19868749 aaagtatgttaagtcaataatgtataatttcaaatatgtcatctattgaggg 19868698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 73
Target Start/End: Original strand, 37516343 - 37516394
Alignment:
Q  22 aaagtatgttaagtcaataatgtatattgtcaaatagattatctattgaggg 73  Q
    ||||||| | ||||||||||||||||||||||| ||| ||||||||| ||||    
T  37516343 aaagtatatcaagtcaataatgtatattgtcaactaggttatctattaaggg 37516394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 73
Target Start/End: Original strand, 39405962 - 39406013
Alignment:
Q  22 aaagtatgttaagtcaataatgtatattgtcaaatagattatctattgaggg 73  Q
    ||||||| ||||||||||||||||||||||||| ||| | || |||||||||    
T  39405962 aaagtatattaagtcaataatgtatattgtcaactaggtcatttattgaggg 39406013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 87
Target Start/End: Complemental strand, 5212985 - 5212920
Alignment:
Q  22 aaagtatgttaagtcaataatgtatattgtcaaatagattatctattgaggggcagagggagtatt 87  Q
    ||||||||| ||||||||||||||||||||||| ||| | || |||| || | | |||||||||||    
T  5212985 aaagtatgtcaagtcaataatgtatattgtcaactaggtcatttattaagagacggagggagtatt 5212920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 54
Target Start/End: Complemental strand, 32002077 - 32002045
Alignment:
Q  22 aaagtatgttaagtcaataatgtatattgtcaa 54  Q
    ||||||||| |||||||||||||||||||||||    
T  32002077 aaagtatgtcaagtcaataatgtatattgtcaa 32002045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 39036608 - 39036668
Alignment:
Q  22 aaagtatgttaagtcaataatgtatattgtcaaatagattatctattgaggggcagaggga 82  Q
    ||||||||  ||||||||||||||||||||||| ||| | ||||||| |||| | ||||||    
T  39036608 aaagtatgacaagtcaataatgtatattgtcaactaggtcatctattaagggacggaggga 39036668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 54
Target Start/End: Original strand, 39894979 - 39895011
Alignment:
Q  22 aaagtatgttaagtcaataatgtatattgtcaa 54  Q
    ||||||||| |||||||||||||||||||||||    
T  39894979 aaagtatgtcaagtcaataatgtatattgtcaa 39895011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 43067419 - 43067483
Alignment:
Q  22 aaagtatgttaagtcaataatgtatattgtcaaatagattatctattgaggggcagagggagtat 86  Q
    ||||||| |||| |||||||||||||||||||| ||| | || ||||||||| | || |||||||    
T  43067419 aaagtatattaaatcaataatgtatattgtcaactaggtcatttattgagggacggatggagtat 43067483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 13207016 - 13206952
Alignment:
Q  22 aaagtatgttaagtcaataatgtatattgtcaaatagattatctattgaggggcagagggagtat 86  Q
    |||| ||||||||||||||| |||||||||||||||| | |||||||||| | | ||||||||||    
T  13207016 aaagaatgttaagtcaataaagtatattgtcaaataggtcatctattgagtgacggagggagtat 13206952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 16696079 - 16696015
Alignment:
Q  22 aaagtatgttaagtcaataatgtatattgtcaaatagattatctattgaggggcagagggagtat 86  Q
    ||||||||| |||||||| |||||||||||||| ||| | |||||||||||| | ||||||||||    
T  16696079 aaagtatgtcaagtcaatgatgtatattgtcaactaggtcatctattgagggacggagggagtat 16696015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 73
Target Start/End: Complemental strand, 19068834 - 19068783
Alignment:
Q  22 aaagtatgttaagtcaataatgtatattgtcaaatagattatctattgaggg 73  Q
    |||||||||||| ||||||||| || ||||||||||||| ||||||||||||    
T  19068834 aaagtatgttaaatcaataatgcattttgtcaaatagatcatctattgaggg 19068783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 87
Target Start/End: Original strand, 8796247 - 8796312
Alignment:
Q  22 aaagtatgttaagtcaataatgtatattgtcaaatagattatctattgaggggcagagggagtatt 87  Q
    ||||||||||||||||||||||||||||||||| | | | || |||| |||| | |||||||||||    
T  8796247 aaagtatgttaagtcaataatgtatattgtcaactgggtcatttattaagggacggagggagtatt 8796312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 25163362 - 25163426
Alignment:
Q  22 aaagtatgttaagtcaataatgtatattgtcaaatagattatctattgaggggcagagggagtat 86  Q
    ||||||| ||||||||||||||||||||||||| ||  | || ||||||||| | ||||||||||    
T  25163362 aaagtatattaagtcaataatgtatattgtcaactatgtcatttattgagggacggagggagtat 25163426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 161
Target Start/End: Complemental strand, 28177785 - 28177738
Alignment:
Q  114 atctaaaatgaactaaaggcacccaacgacaccaaagtcaaaggtgct 161  Q
    |||||||||||||||||| ||||||| |||| ||||| ||||||||||    
T  28177785 atctaaaatgaactaaagacacccaaagacaacaaagacaaaggtgct 28177738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 87
Target Start/End: Original strand, 33121750 - 33121805
Alignment:
Q  32 aagtcaataatgtatattgtcaaatagattatctattgaggggcagagggagtatt 87  Q
    ||||||||||| |||||||||||| |||| || |||| |||| |||||||||||||    
T  33121750 aagtcaataatatatattgtcaaacagatcatttatttagggacagagggagtatt 33121805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 54
Target Start/End: Original strand, 22020472 - 22020506
Alignment:
Q  20 ttaaagtatgttaagtcaataatgtatattgtcaa 54  Q
    ||||||||||| |||||||||||||||||||||||    
T  22020472 ttaaagtatgtcaagtcaataatgtatattgtcaa 22020506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 87
Target Start/End: Complemental strand, 7097936 - 7097871
Alignment:
Q  22 aaagtatgttaagtcaataatgtatattgtcaaatagattatctattgaggggcagagggagtatt 87  Q
    ||||||||||||||||||||| ||||||||||| |  || || |||| |||| | |||||||||||    
T  7097936 aaagtatgttaagtcaataatctatattgtcaactgaatcatttattaagggacggagggagtatt 7097871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 87
Target Start/End: Original strand, 24150939 - 24151004
Alignment:
Q  22 aaagtatgttaagtcaataatgtatattgtcaaatagattatctattgaggggcagagggagtatt 87  Q
    ||||||| | |||||||||||| |||||||||| || ||||| |||| |||| | |||||||||||    
T  24150939 aaagtatatcaagtcaataatgcatattgtcaactaaattatttattaagggacggagggagtatt 24151004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 54
Target Start/End: Original strand, 18992101 - 18992133
Alignment:
Q  22 aaagtatgttaagtcaataatgtatattgtcaa 54  Q
    ||||||||| |||||||||||||||||||||||    
T  18992101 aaagtatgtcaagtcaataatgtatattgtcaa 18992133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 54
Target Start/End: Original strand, 30237365 - 30237397
Alignment:
Q  22 aaagtatgttaagtcaataatgtatattgtcaa 54  Q
    ||||||||| |||||||||||||||||||||||    
T  30237365 aaagtatgtcaagtcaataatgtatattgtcaa 30237397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 89
Target Start/End: Complemental strand, 15279 - 15212
Alignment:
Q  22 aaagtatgttaagtcaataatgtatattgtcaaatagattatctattgaggggcagagggagtatttt 89  Q
    ||||||||| ||||||||||||||||||||||| ||| | || |||| |||| | |||||||||||||    
T  15279 aaagtatgtcaagtcaataatgtatattgtcaactaggtcatttattaagggacggagggagtatttt 15212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 72
Target Start/End: Complemental strand, 38295 - 38245
Alignment:
Q  22 aaagtatgttaagtcaataatgtatattgtcaaatagattatctattgagg 72  Q
    ||||||| |||| |||| ||||||||||||||||||| | |||||||||||    
T  38295 aaagtattttaaatcaaaaatgtatattgtcaaataggtcatctattgagg 38245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0604 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0604
Description:

Target: scaffold0604; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 86
Target Start/End: Original strand, 1317 - 1370
Alignment:
Q  33 agtcaataatgtatattgtcaaatagattatctattgaggggcagagggagtat 86  Q
    |||||||||||||||||||||| ||| | ||||||||| || | ||||||||||    
T  1317 agtcaataatgtatattgtcaactaggtcatctattgacggacggagggagtat 1370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0459 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0459
Description:

Target: scaffold0459; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 54
Target Start/End: Original strand, 12950 - 12982
Alignment:
Q  22 aaagtatgttaagtcaataatgtatattgtcaa 54  Q
    ||||||||| |||||||||||||||||||||||    
T  12950 aaagtatgtcaagtcaataatgtatattgtcaa 12982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0366 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: scaffold0366
Description:

Target: scaffold0366; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 54
Target Start/End: Original strand, 10591 - 10623
Alignment:
Q  22 aaagtatgttaagtcaataatgtatattgtcaa 54  Q
    ||||||||| |||||||||||||||||||||||    
T  10591 aaagtatgtcaagtcaataatgtatattgtcaa 10623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0366; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 54
Target Start/End: Original strand, 14257 - 14289
Alignment:
Q  22 aaagtatgttaagtcaataatgtatattgtcaa 54  Q
    ||||||||| |||||||||||||||||||||||    
T  14257 aaagtatgtcaagtcaataatgtatattgtcaa 14289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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