View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11069A_low_208 (Length: 240)
Name: NF11069A_low_208
Description: NF11069A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11069A_low_208 |
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Alignment Details
Target: chr6 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 19 - 234
Target Start/End: Original strand, 2600832 - 2601049
Alignment:
| Q |
19 |
caaacataccaaatgtttgagctatgaatactagaaaaagttcaattagcgacagaaaatagaaatgaaaaaattgaattaatctgcatttgagggtgtc |
118 |
Q |
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| T |
2600832 |
caaacataccaaatgtttgagcaatcaatactagaaaaagttcaattagcgacagaaaatagaaatgaaaaaattgaattaatctgcatttgagggtgtc |
2600931 |
T |
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| Q |
119 |
tttaacac--atagagacggacttcatgtttttctgtctcttaacttttcgccgttgattcaaatttttcttagtattattaattgaatggaatgagata |
216 |
Q |
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| T |
2600932 |
ttcaacacatatagagacggacttcatgtttatctgtctcttaacttttcgtcgttgattcaaatttttctcagtattattaattgaatggaatgagata |
2601031 |
T |
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| Q |
217 |
aagggttaaagtataatt |
234 |
Q |
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|||||||||||||||||| |
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| T |
2601032 |
aagggttaaagtataatt |
2601049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 53 - 234
Target Start/End: Original strand, 2573390 - 2573571
Alignment:
| Q |
53 |
aaaaagttcaattagcgacagaaaatagaaatgaaaaaattgaattaatctgcatttgagggtgtctttaacacatagagacggacttcatgtttttctg |
152 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| | |||| || | | ||||| ||||||||||||||||||||||||||||| || |
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| T |
2573390 |
aaaaagttcaattagcgacagaaaatagaaatgaaaaaattgaattactatgcaatt-atgatgtctctaacacatagagacggacttcatgtttttttg |
2573488 |
T |
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| Q |
153 |
tctcttaacttttcgccgttgattcaa-atttttcttagtattattaattgaatggaatgagataaagggttaaagtataatt |
234 |
Q |
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| T |
2573489 |
tatcttaacttttcgtcgctgattcaacttttttctgaatagtattaattgaatggaatgagataaagggttaaagtataatt |
2573571 |
T |
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