View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11069A_low_21 (Length: 425)
Name: NF11069A_low_21
Description: NF11069A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11069A_low_21 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 22 - 377
Target Start/End: Original strand, 55173885 - 55174240
Alignment:
| Q |
22 |
acggtccaaccctgagggtcacgtacattccttttgattgaacaagcctaatgaacttcaccaaatcattgttgccttcaaagttgaactgcataacgtt |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
55173885 |
acggtccaaccctgagggtcacgtacattccttttgattgaacaagcctaatgaacttcaccaaatcattgttgccttcaaaattgaactgcataacgtt |
55173984 |
T |
|
| Q |
122 |
tgataaacaaattaagtttacaatcaaatgttccatacattgagtcaagagattaattttgtcatttaattaatcatataccttgccttgctctggctca |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55173985 |
tgataaacaaattaagtttacaatcaaatgttccatacattgagtcaagagattaattttgtcatttaattaatcatataccttgccttgctctggctca |
55174084 |
T |
|
| Q |
222 |
tgagcgttccaaaacacgtaagtttgaataacgttcaaacctccatgtcttgccttatcaagaatgtctggccacgcctgaaaagtacaacatcaatcaa |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55174085 |
tgagcgttccaaaacacgtaagtttgaataacgttcaaacctccatgtcttgccttatcaagaatgtctggccacgcctgaaaagtacaacatcaatcaa |
55174184 |
T |
|
| Q |
322 |
tcttatgaatccatcatttgttgttgttatattattgtaatgatcatggatgtagt |
377 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
55174185 |
tcttatgaatccatcatctgttgttattatattattgtaatgatcatggatgtagt |
55174240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University