View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11069A_low_210 (Length: 240)
Name: NF11069A_low_210
Description: NF11069A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11069A_low_210 |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 5898388 - 5898625
Alignment:
| Q |
1 |
aaaggtacatatctacaatcacaaaaatcattttagcttttccttgatgaccattgaccaaacaggttcaaaggttaaggaaaaaattaatggtgttaac |
100 |
Q |
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| T |
5898388 |
aaaggtacttatctacaatcacaaaaatcattttagcttttccttgatgaccattgaccaaacaggttcaaaggttaaggaaaaaattaatggtgttaac |
5898487 |
T |
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| Q |
101 |
atcctaaatcaaggatagctacattcgttagaactatgaccataagaatctgttgcagcaactgcagcaagtcggcctgcgtcattcttcaaactccctc |
200 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5898488 |
atcctaaatcaaggatagctacattcgttggaactatgaccataagaatctgttgcagcaactgcagcaagtcggcctgcgtcattcttcaaactccctc |
5898587 |
T |
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| Q |
201 |
attaacaattctcctgatataagcagctctggttcttc |
238 |
Q |
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|||||||||||| ||||| ||||||||||||||||||| |
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| T |
5898588 |
attaacaattcttctgatctaagcagctctggttcttc |
5898625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 5860209 - 5860445
Alignment:
| Q |
1 |
aaaggtacatatctacaatcacaaaaatcattttagcttttccttgatgaccattgaccaaacaggttcaaaggttaaggaaaaaattaatggtgttaac |
100 |
Q |
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||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |||||||||||| |
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| T |
5860209 |
aaaggtagttatctacaatcacaaaa-tcattttagcttttccttgatgatcattgaccaaactggttcaaaggttaaggaaaaaatgaatggtgttaac |
5860307 |
T |
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| Q |
101 |
atcctaaatcaaggatagctacattcgttagaactatgaccataagaatctgttgcagcaactgcagcaagtcggcctgcgtcattcttcaaactccctc |
200 |
Q |
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||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |
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| T |
5860308 |
atcctaaatcaaggatagctacattcgttggagctatgaccataagaatctgttgcagcaactgtagcaagtcggcctgtgtcattcttcaaactccctc |
5860407 |
T |
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| Q |
201 |
attaacaattctcctgatataagcagctctggttcttc |
238 |
Q |
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|||||||||||||||||| ||||||||||||||||||| |
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| T |
5860408 |
attaacaattctcctgatctaagcagctctggttcttc |
5860445 |
T |
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