View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11069A_low_211 (Length: 240)
Name: NF11069A_low_211
Description: NF11069A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11069A_low_211 |
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| [»] scaffold0945 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 24546231 - 24546007
Alignment:
| Q |
1 |
tttactaattacattacaaaattaagctctctattatgatataaatggcatggccataattgcttctgttttcgttctttctacaaacccatgaatgctt |
100 |
Q |
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| T |
24546231 |
tttactaattatattacaaaattaagctctctattatgatataaatgacatggccatcattgcttcttttttcgttctttctacaaacccatgaatgctt |
24546132 |
T |
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| Q |
101 |
cttttatttggaccggtaattccatagtgtttgcttcaatttagagtagactcagattaacaaagattgacttcatctttaagattaggctgaagagcct |
200 |
Q |
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| T |
24546131 |
ctttt-tttggactggtaattccatagtgtttgcttcaatttagagtagactcaaattaacaaagattgacttcatctttaagattaggctgaagagcct |
24546033 |
T |
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| Q |
201 |
cttattggttttacacttcaattata |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
24546032 |
cttattggttttacacttcaattata |
24546007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0945 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0945
Description:
Target: scaffold0945; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 85 - 224
Target Start/End: Original strand, 722 - 855
Alignment:
| Q |
85 |
aaacccatgaatgcttcttttatttggac-cggtaattccatagtgtttgcttcaatttagagtagactcagattaacaaagattgacttcatctttaag |
183 |
Q |
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||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||| |||||||| ||| | ||||||||||||||||||||| |
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| T |
722 |
aaacccatgaatgcttcttttatttggacttggtcattccaaagtgtttgcttcaatt-----tagactcaaatt-agtaagattgacttcatctttaag |
815 |
T |
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| Q |
184 |
attaggctgaagagcctcttattggttttacacttcaatta |
224 |
Q |
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| T |
816 |
attggacttaa-agtctcttataggttttatgcttcaatta |
855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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