View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11069A_low_212 (Length: 239)
Name: NF11069A_low_212
Description: NF11069A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11069A_low_212 |
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| [»] scaffold0212 (1 HSPs) |
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Alignment Details
Target: scaffold0212 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: scaffold0212
Description:
Target: scaffold0212; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 13 - 202
Target Start/End: Complemental strand, 14034 - 13845
Alignment:
| Q |
13 |
gacagcaatggtatcggacttatgagtattcagactataacagttccgatgaacagtcactcacttttgacagttatacgattccggaagatgatctaga |
112 |
Q |
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| T |
14034 |
gacatcaatggtatcggacttatgagtattcagactataacagttccgatgaacagtcactcacttttgacagttatacgattccggaagatgatctaga |
13935 |
T |
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| Q |
113 |
attgggtcaatcacgtttattagaagtggacaatagagtggttgtaccagccaaaactcatctacgtattattgtaacatctgctgatgt |
202 |
Q |
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| T |
13934 |
attgggtcaatcacgtttattagaagtggacaatagagtggttgtaccagccaaaactcatctacgtattattgtaacatctgctgatgt |
13845 |
T |
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Target: chr7 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 69 - 202
Target Start/End: Original strand, 1677528 - 1677661
Alignment:
| Q |
69 |
tcactcacttttgacagttatacgattccggaagatgatctagaattgggtcaatcacgtttattagaagtggacaatagagtggttgtaccagccaaaa |
168 |
Q |
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| T |
1677528 |
tcactcacttttgaaacttatacgattttggaaaatgatctataattaggtcaatcatgtttattagaattggacaatagagtgattgtaccagccaaaa |
1677627 |
T |
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| Q |
169 |
ctcatctacgtattattgtaacatctgctgatgt |
202 |
Q |
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| T |
1677628 |
ctcatctacgtattattgtaacatttgttgatgt |
1677661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 34584487 - 34584443
Alignment:
| Q |
13 |
gacagcaatggtatcggacttatgagtattcagactataacagtt |
57 |
Q |
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| T |
34584487 |
gacatcaatggtatcggacttatgagtattcagactataacagtt |
34584443 |
T |
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