View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11069A_low_213 (Length: 239)
Name: NF11069A_low_213
Description: NF11069A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11069A_low_213 |
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Alignment Details
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 45945746 - 45945532
Alignment:
| Q |
1 |
tgttcccgaagaacatcgtaagatgcttgtttcacaaggttgcattgttaaggagattgagcctgtgtaacctccagccaaccaaaccgaatttgctatg |
100 |
Q |
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| T |
45945746 |
tgttcctgaagaacatcgtaagatccttgtttcacaaggttgcattgttaaggagattgctcctgtgtaccctccagccaaccaaaccgaatttgctatg |
45945647 |
T |
|
| Q |
101 |
gcgtattatgtcatcaattactccaaactacgtatctttgaggtacatgtctttgagtaaaatgtcttttttattatatctttgcttttgcatgtgttac |
200 |
Q |
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| T |
45945646 |
gcatattatgtcatcaattactccaaactacgtatcttcgaggtacatgtctttgagtaaaatgtcttttttattatatctttgcttttgcatgtgttac |
45945547 |
T |
|
| Q |
201 |
acgtagttatggtcc |
215 |
Q |
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||||||||||||||| |
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| T |
45945546 |
acgtagttatggtcc |
45945532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 135
Target Start/End: Original strand, 45036316 - 45036359
Alignment:
| Q |
92 |
tttgctatggcgtattatgtcatcaattactccaaactacgtat |
135 |
Q |
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| T |
45036316 |
tttgctatggcgtattacgtcatcaattattccaaactccgtat |
45036359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 35 - 135
Target Start/End: Original strand, 55221483 - 55221583
Alignment:
| Q |
35 |
caaggttgcattgttaaggagattgagcctgtgtaacctccagccaaccaaaccgaatttgctatggcgtattatgtcatcaattactccaaactacgta |
134 |
Q |
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| T |
55221483 |
caaggttgcattgttagagagattgcacctgtttaccctcctaagaatcaaacccaatttgctatggcttattatgtcatcaactactccaaactacgta |
55221582 |
T |
|
| Q |
135 |
t |
135 |
Q |
| |
|
| |
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| T |
55221583 |
t |
55221583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 35 - 135
Target Start/End: Original strand, 37697620 - 37697720
Alignment:
| Q |
35 |
caaggttgcattgttaaggagattgagcctgtgtaacctccagccaaccaaaccgaatttgctatggcgtattatgtcatcaattactccaaactacgta |
134 |
Q |
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|||||||||||||||| || ||||| ||||| || ||||||| |||||||| | ||||| ||||| |||||||||||||| ||||||||| |||||| |
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| T |
37697620 |
caaggttgcattgttagagaaattgaacctgtttatcctccagaaaaccaaactcagtttgccatggcttattatgtcatcaactactccaaattacgta |
37697719 |
T |
|
| Q |
135 |
t |
135 |
Q |
| |
|
| |
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|
| T |
37697720 |
t |
37697720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 135
Target Start/End: Complemental strand, 37687899 - 37687798
Alignment:
| Q |
35 |
caaggttgcattgttaaggagattgagcctgtgtaacctcca-gccaaccaaaccgaatttgctatggcgtattatgtcatcaattactccaaactacgt |
133 |
Q |
| |
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|||||||||||||||| || ||||| ||||| || |||||| | |||||||| | ||||| ||||| |||||||||||||| ||||||||| ||||| |
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| T |
37687899 |
caaggttgcattgttagagaaattgaacctgtttatcctccaagaaaaccaaactcagtttgccatggcttattatgtcatcaactactccaaattacgt |
37687800 |
T |
|
| Q |
134 |
at |
135 |
Q |
| |
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|| |
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|
| T |
37687799 |
at |
37687798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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