View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11069A_low_216 (Length: 238)
Name: NF11069A_low_216
Description: NF11069A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11069A_low_216 |
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Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 20 - 213
Target Start/End: Complemental strand, 34683397 - 34683204
Alignment:
| Q |
20 |
ttttttgtgtgtttggataagattttaataaattctgaagctctagggctgcattattcatctctaagactagaatatcaagtttgtttgattttttcat |
119 |
Q |
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| T |
34683397 |
ttttttgtgtgtttggataagattttaataaattctgaagctctagggctgcattattcatctctatgactagaatatcaagtttgtttgattttttcat |
34683298 |
T |
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| Q |
120 |
tttctttattgtacttgccaactctcttaggacatttgcagagttgtctcccactttcatagaggttctgctcataatcttcatgatgtcatct |
213 |
Q |
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| T |
34683297 |
tttctttattgtacttgccaactctcttaggacatttgcagagttgtctcccacttttatagaggttctgctcataatcttcatgatgtcatct |
34683204 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 25 - 213
Target Start/End: Complemental strand, 34699611 - 34699423
Alignment:
| Q |
25 |
tgtgtgtttggataagattttaataaattctgaagctctagggctgcattattcatctctaagactagaatatcaagtttgtttgattttttcattttct |
124 |
Q |
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| T |
34699611 |
tgtgtgtttgaatatgattttaataaattttgtagctcttgtgtagcaatattcatctctttgaccaaactatcaagtttctttgactttgtcatattat |
34699512 |
T |
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| Q |
125 |
ttattgtacttgccaactctcttaggacatttgcagagttgtctcccactttcatagaggttctgctcataatcttcatgatgtcatct |
213 |
Q |
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| T |
34699511 |
tgattgtaattgatagctctcttaagacactcgcagagttggctcccactttcattgatgttgtgctcataatcttcttgatttcatct |
34699423 |
T |
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