View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11069A_low_220 (Length: 237)
Name: NF11069A_low_220
Description: NF11069A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11069A_low_220 |
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Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-107; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 3 - 218
Target Start/End: Original strand, 8946980 - 8947195
Alignment:
| Q |
3 |
gagtttcgtgttgcaaaatgatgaattgttggtatttgcaaattgacataacttccctttccattttgaagggattttagtcattccattatcattaaaa |
102 |
Q |
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| T |
8946980 |
gagtttcttgttgcaaaatgatgaattgttgctattttcaaattgacataacttccctttccattttgaagggattttagtcattccattatcattaaaa |
8947079 |
T |
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| Q |
103 |
ctttcactttcgggtcaaacacctgagtcaatcaaaccaataatgacatcttgaccaaacttagaagctggccatgccccttcaaatggattgaggccaa |
202 |
Q |
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| T |
8947080 |
ctttcactctcgggccaaacacctgagtcaatcaaaccaataatgacatcttgaccaaacttagaagctggccatgccccttcaaatggattgaggccaa |
8947179 |
T |
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| Q |
203 |
ggaattgtggtgagtg |
218 |
Q |
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| T |
8947180 |
ggaattgtggtgagtg |
8947195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 3 - 219
Target Start/End: Complemental strand, 8973515 - 8973299
Alignment:
| Q |
3 |
gagtttcgtgttgcaaaatgatgaattgttggtatttgcaaattgacataacttccctttccattttgaagggattttagtcattccattatcattaaaa |
102 |
Q |
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| T |
8973515 |
gagtttcttgttgcaaaaagatgaattgttggtattttcaaattgacataattgccctttccattttgaaggaatttgaggcatgtcattatctttgaaa |
8973416 |
T |
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| Q |
103 |
ctttcactttcgggtcaaacacctgagtcaatcaaaccaataatgacatcttgaccaaacttagaagctggccatgccccttcaaatggattgaggccaa |
202 |
Q |
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| T |
8973415 |
ctttcactttctggccaaacaccggtatcaatcataccaacaatgacatctttgccataatcagaagctggccatgcccctttgtatgaattaaggccaa |
8973316 |
T |
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| Q |
203 |
ggaattgtggtgagtga |
219 |
Q |
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| T |
8973315 |
ggaattgtggtgagtga |
8973299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 11 - 217
Target Start/End: Complemental strand, 8962105 - 8961899
Alignment:
| Q |
11 |
tgttgcaaaatgatgaattgttggtatttgcaaattgacataacttccctttccattttgaagggattttagtcattccattatcattaaaactttcact |
110 |
Q |
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| T |
8962105 |
tgttgcaaaaagatgaattgttggtattttcaaattgacataatttccctttccattttgaaggaattttagtaaatccattatcattgaaactttcact |
8962006 |
T |
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| Q |
111 |
ttcgggtcaaacacctgagtcaatcaaaccaataatgacatcttgaccaaacttagaagctggccatgccccttcaaatggattgaggccaaggaattgt |
210 |
Q |
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| T |
8962005 |
ttctggccaaacaccggtatcaatcacaccaacaatgacatcttttccataatcagaagctagccacacccctttgtagggattaagaccaaggaattga |
8961906 |
T |
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| Q |
211 |
ggtgagt |
217 |
Q |
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| T |
8961905 |
ggtgagt |
8961899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 41 - 218
Target Start/End: Original strand, 21688169 - 21688346
Alignment:
| Q |
41 |
caaattgacataacttccctttccattttgaagggattttagtcattccattatcattaaaactttcactttcgggtcaaacacctgagtcaatcaaacc |
140 |
Q |
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| T |
21688169 |
caaattgacataattggcctttccattttgagggtattttagtcattccatcatctctaaaactttcactttctggccaaacaccagtgtctattacacc |
21688268 |
T |
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| Q |
141 |
aataatgacatcttgaccaaacttagaagctggccatgccccttcaaatggattgaggccaaggaattgtggtgagtg |
218 |
Q |
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| T |
21688269 |
aacaatgatatctttaccaaaatcagaagttggccatgcccctctatatggattaaggccaagaaattgaggtgagtg |
21688346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 58 - 136
Target Start/End: Original strand, 34963779 - 34963857
Alignment:
| Q |
58 |
cctttccattttgaagggattttagtcattccattatcattaaaactttcactttcgggtcaaacacctgagtcaatca |
136 |
Q |
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||||||||||||||||| |||||||||||||||| ||| || || || |||||||| || ||||| |||| |||||||| |
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| T |
34963779 |
cctttccattttgaaggaattttagtcattccatcatctttgaagctctcactttctggccaaactcctgtgtcaatca |
34963857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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