View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11069A_low_221 (Length: 237)

Name: NF11069A_low_221
Description: NF11069A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11069A_low_221
NF11069A_low_221
[»] chr1 (4 HSPs)
chr1 (23-219)||(7386417-7386613)
chr1 (46-182)||(19991215-19991350)
chr1 (45-129)||(19322649-19322733)
chr1 (188-219)||(19322751-19322782)
[»] chr5 (3 HSPs)
chr5 (22-219)||(4925202-4925404)
chr5 (22-182)||(35205787-35205947)
chr5 (22-163)||(35211203-35211344)
[»] chr3 (3 HSPs)
chr3 (24-182)||(52314493-52314651)
chr3 (26-182)||(53464903-53465059)
chr3 (50-147)||(1995809-1995906)
[»] chr4 (2 HSPs)
chr4 (23-179)||(23563558-23563714)
chr4 (23-151)||(48265287-48265415)
[»] chr2 (2 HSPs)
chr2 (21-117)||(39375508-39375604)
chr2 (176-219)||(39375627-39375670)
[»] chr8 (1 HSPs)
chr8 (21-138)||(40278487-40278604)
[»] chr7 (1 HSPs)
chr7 (24-145)||(45888823-45888944)


Alignment Details
Target: chr1 (Bit Score: 165; Significance: 2e-88; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 23 - 219
Target Start/End: Complemental strand, 7386613 - 7386417
Alignment:
Q  23 ctaagagcatacacatcgtctgtccatatgggtggtatcacactaaccaatgctctcgtgtcataatatcatagataattggctttggaattgagtagtt 122  Q
    |||||||||||||||||| |  |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  7386613 ctaagagcatacacatcgcccatccatatgggtggtatcacactaaccaatgctcttgtgtcataatatcatggataattggctttggaattgagtagtt 7386514  T
Q  123 aaactatacatggtagcaatgcattactacgttccttttccagtaattgttagattttgtaatactttgagttttatttcttttaattaatagtata 219  Q
    ||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  7386513 aaattatacatggtagcaatgcattactacgttccttttcctgtaattgtcagattttgtaatactttgagttttatttcttttaattaatagtata 7386417  T

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Target: chr1; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 46 - 182
Target Start/End: Original strand, 19991215 - 19991350
Alignment:
Q  46 ccatatgggtggtatcacactaaccaatgctctcgtgtcataatatcatagataattggctttggaattgagtagttaaactatacatggtagcaatgca 145  Q
    |||||||||||||||||||||  |||||||| | ||||||||| ||||| |||||||||| ||| ||||||||||||||||||| |||||||  |||| |    
T  19991215 ccatatgggtggtatcacactgcccaatgcttttgtgtcataagatcatggataattggcattgaaattgagtagttaaactatccatggtaataatgga 19991314  T
Q  146 ttactacgttccttttccagtaattgttagattttgt 182  Q
    ||||||| |||||||||| | ||||||| ||||||||    
T  19991315 ttactaccttccttttcctgcaattgtt-gattttgt 19991350  T

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Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 45 - 129
Target Start/End: Original strand, 19322649 - 19322733
Alignment:
Q  45 tccatatgggtggtatcacactaaccaatgctctcgtgtcataatatcatagataattggctttggaattgagtagttaaactat 129  Q
    |||||||||||||||| ||| ||||||| | ||| |||||||||||||||  |||||||||||| ||||||||||||||||||||    
T  19322649 tccatatgggtggtattacaataaccaacgttcttgtgtcataatatcatgaataattggctttagaattgagtagttaaactat 19322733  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 219
Target Start/End: Original strand, 19322751 - 19322782
Alignment:
Q  188 tttgagttttatttcttttaattaatagtata 219  Q
    ||||||||||||||||||||||||||||||||    
T  19322751 tttgagttttatttcttttaattaatagtata 19322782  T

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Target: chr5 (Bit Score: 124; Significance: 6e-64; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 22 - 219
Target Start/End: Complemental strand, 4925404 - 4925202
Alignment:
Q  22 actaagagcatacacatcgtctgtccatatgggtggtatcacactaaccaatgctctcgtgtcataatatcatagataattggctttggaattgagtagt 121  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  4925404 actaagagcatacgcatcgtctgtccatatgggtggtatcacactaaccaatgctcttgtgtcataatatcatggataattggctttggaattgagtagt 4925305  T
Q  122 taaactatacatggtagcaatgcattactacgttccttttccagtaattgttagattttgt-----------aatactttgagttttatttcttttaatt 210  Q
    |||||||||||||||| ||||||||||||||||||||      |||||||||||||||| |           |||||||||||| |||||||||||||||    
T  4925304 taaactatacatggtaacaatgcattactacgttcct------gtaattgttagattttatacatattttagaatactttgagtattatttcttttaatt 4925211  T
Q  211 aatagtata 219  Q
    |||||||||    
T  4925210 aatagtata 4925202  T

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Target: chr5; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 22 - 182
Target Start/End: Complemental strand, 35205947 - 35205787
Alignment:
Q  22 actaagagcatacacatcgtctgtccatatgggtggtatcacactaaccaatgctctcgtgtcataatatcatagataattggctttggaattgagtagt 121  Q
    ||||||||||| ||||||| |||  |||||||||||||||||| || |||||||| | ||||||||| |||||  ||||||||| ||| |||||||| ||    
T  35205947 actaagagcatgcacatcgcctgcacatatgggtggtatcacattacccaatgcttttgtgtcataagatcatgaataattggcattgaaattgagtggt 35205848  T
Q  122 taaactatacatggtagcaatgcattactacgttccttttccagtaattgttagattttgt 182  Q
    |||||||| ||||| || ||||||||||| | |||||||||| | ||||||  ||||||||    
T  35205847 taaactatccatggaagtaatgcattactgccttccttttcctgcaattgtctgattttgt 35205787  T

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Target: chr5; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 22 - 163
Target Start/End: Original strand, 35211203 - 35211344
Alignment:
Q  22 actaagagcatacacatcgtctgtccatatgggtggtatcacactaaccaatgctctcgtgtcataatatcatagataattggctttggaattgagtagt 121  Q
    ||||||||||| ||||||  |||  |||||||||||||||||| || |||||||| | ||||||||| |||||  ||||||||| ||| |||||||| ||    
T  35211203 actaagagcatgcacatcacctgcacatatgggtggtatcacattacccaatgcttttgtgtcataagatcatgaataattggcattgaaattgagtggt 35211302  T
Q  122 taaactatacatggtagcaatgcattactacgttccttttcc 163  Q
    |||||||| |||||||| ||||||||||| | ||||||||||    
T  35211303 taaactatccatggtagtaatgcattactgccttccttttcc 35211344  T

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Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 24 - 182
Target Start/End: Complemental strand, 52314651 - 52314493
Alignment:
Q  24 taagagcatacacatcgtctgtccatatgggtggtatcacactaaccaatgctctcgtgtcataatatcatagataattggctttggaattgagtagtta 123  Q
    ||||||||| ||||||| |||  |||||||||||||||||| |  |||||||| | ||||||||| |||||  ||||||||| ||| |||||||||||||    
T  52314651 taagagcatgcacatcgcctgcacatatgggtggtatcacattgcccaatgcttttgtgtcataagatcatgaataattggcattgaaattgagtagtta 52314552  T
Q  124 aactatacatggtagcaatgcattactacgttccttttccagtaattgttagattttgt 182  Q
    |||||| |||||||| ||||||||||||| |||||||||| | ||||||  ||||||||    
T  52314551 aactatccatggtagtaatgcattactaccttccttttcctgcaattgtctgattttgt 52314493  T

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Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 26 - 182
Target Start/End: Complemental strand, 53465059 - 53464903
Alignment:
Q  26 agagcatacacatcgtctgtccatatgggtggtatcacactaaccaatgctctcgtgtcataatatcatagataattggctttggaattgagtagttaaa 125  Q
    ||||||| ||||||| |||  |||||||||||||||||| |  |||||||| | ||||||||| |||||  ||||||||| ||| |||||||||||||||    
T  53465059 agagcatgcacatcgcctgcacatatgggtggtatcacattgcccaatgcttttgtgtcataagatcatgaataattggcattgaaattgagtagttaaa 53464960  T
Q  126 ctatacatggtagcaatgcattactacgttccttttccagtaattgttagattttgt 182  Q
    |||| |||||||| ||||||||||||| |||||||||| | ||||||  ||||||||    
T  53464959 ctatccatggtagtaatgcattactaccttccttttcctgcaattgtctgattttgt 53464903  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 147
Target Start/End: Complemental strand, 1995906 - 1995809
Alignment:
Q  50 atgggtggtatcacactaaccaatgctctcgtgtcataatatcatagataattggctttggaattgagtagttaaactatacatggtagcaatgcatt 147  Q
    ||||||||||  ||||| || ||||| || | ||||||||||| | |||||||||| |||||  ||||||| ||||| |  ||| |||||||||||||    
T  1995906 atgggtggtaatacactgactaatgcacttgagtcataatatcttggataattggcattggatatgagtagctaaaccaaccatagtagcaatgcatt 1995809  T

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Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 23 - 179
Target Start/End: Complemental strand, 23563714 - 23563558
Alignment:
Q  23 ctaagagcatacacatcgtctgtccatatgggtggtatcacactaaccaatgctctcgtgtcataatatcatagataattggctttggaattgagtagtt 122  Q
    |||||||||| ||||||| |||   |||||||||||||||||||  |||||||| | ||||||||| ||||| |||||||| | ||| ||||||||||||    
T  23563714 ctaagagcatgcacatcggctgcatatatgggtggtatcacactgcccaatgcttttgtgtcataagatcatggataattgacattgaaattgagtagtt 23563615  T
Q  123 aaactatacatggtagcaatgcattactacgttccttttccagtaattgttagattt 179  Q
    ||||||| |||||| | ||||||||||||| |||||||||| | |||||| ||||||    
T  23563614 aaactatccatggtggtaatgcattactaccttccttttcctgcaattgtcagattt 23563558  T

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Target: chr4; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 23 - 151
Target Start/End: Complemental strand, 48265415 - 48265287
Alignment:
Q  23 ctaagagcatacacatcgtctgtccatatgggtggtatcacactaaccaatgctctcgtgtcataatatcatagataattggctttggaattgagtagtt 122  Q
    |||||| ||| ||||||| |||  ||||||||||||||||||||  |||||||| | ||||||||| ||||| |||||||||| ||| ||||||||||||    
T  48265415 ctaagaacatgcacatcgcctgcacatatgggtggtatcacactgtccaatgcttttgtgtcataagatcatggataattggcattgaaattgagtagtt 48265316  T
Q  123 aaactatacatggtagcaatgcattacta 151  Q
    ||||||| |||||||| ||||||||||||    
T  48265315 aaactatccatggtagtaatgcattacta 48265287  T

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Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 21 - 117
Target Start/End: Original strand, 39375508 - 39375604
Alignment:
Q  21 cactaagagcatacacatcgtctgtccatatgggtggtatcacactaaccaatgctctcgtgtcataatatcatagataattggctttggaattgag 117  Q
    |||||||||||||||||| | ||||||||||||||||||||| |||||||||| |||| ||||||||||||||| ||||||||||||||||||||||    
T  39375508 cactaagagcatacacattgcctgtccatatgggtggtatcatactaaccaatactcttgtgtcataatatcatggataattggctttggaattgag 39375604  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 219
Target Start/End: Original strand, 39375627 - 39375670
Alignment:
Q  176 attttgtaatactttgagttttatttcttttaattaatagtata 219  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||    
T  39375627 attttgtaatactttaagttttatttcttttaattaataatata 39375670  T

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Target: chr8 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 21 - 138
Target Start/End: Original strand, 40278487 - 40278604
Alignment:
Q  21 cactaagagcatacacatcgtctgtccatatgggtggtatcacactaaccaatgctctcgtgtcataatatcatagataattggctttggaattgagtag 120  Q
    |||| ||||||||||||||| |||  ||||||||||||||||||||  |||||||| | ||||||||| ||||| |||||||| | ||| ||||||||||    
T  40278487 cacttagagcatacacatcgcctgcacatatgggtggtatcacactggccaatgcttttgtgtcataaaatcatggataattgacattgaaattgagtag 40278586  T
Q  121 ttaaactatacatggtag 138  Q
    ||||||||| ||||||||    
T  40278587 ttaaactatccatggtag 40278604  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 145
Target Start/End: Complemental strand, 45888944 - 45888823
Alignment:
Q  24 taagagcatacacatcgtctgtccatatgggtggtatcacactaaccaatgctctcgtgtcataatatcatagataattggctttggaattgagtagtta 123  Q
    ||||||||||||||||||| ||| | || |||||||  ||| ||||||||||| | |||||||| || | | |||||||||| |||||  ||||||| ||    
T  45888944 taagagcatacacatcgtcggtcaaaataggtggtaatacattaaccaatgcttttgtgtcatagtaacttggataattggcattggatatgagtagcta 45888845  T
Q  124 aactatacatggtagcaatgca 145  Q
    || ||| ||| || ||||||||    
T  45888844 aattatccatagttgcaatgca 45888823  T

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