View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11069A_low_222 (Length: 237)
Name: NF11069A_low_222
Description: NF11069A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11069A_low_222 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 23033365 - 23033601
Alignment:
| Q |
1 |
aatatctacaacaaagaaactgttaggacagaaaccctggttcaaaataaaatagatacgaagatgcaaacaaaaacaaacaagatatgattggagttcg |
100 |
Q |
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| T |
23033365 |
aatatctacaacaaagaaactgttagaacagaaaccctggttcaaaataaaatagatacgaagatgcaaacaaaaacaaacaagatatgattagagttcg |
23033464 |
T |
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| Q |
101 |
gataattgtgccttgcaacacatttctattattcaagtttaggattacaaattgcaacttgtgtttaattactacggttcactttacaaggcaagagcaa |
200 |
Q |
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| T |
23033465 |
gataattgtgccttgcaacacatttctattattcaagtttaggattacaaattgcaacttgtgtttaattactacggttcactttacaaggcaagagcaa |
23033564 |
T |
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| Q |
201 |
cctatccacttatcagtaaattacgaggcatatccaa |
237 |
Q |
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| T |
23033565 |
cctatccacttatcagtaaattacgaggcatatccaa |
23033601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 178
Target Start/End: Original strand, 4368794 - 4368851
Alignment:
| Q |
121 |
catttctattattcaagtttaggattacaaattgcaacttgtgtttaattactacggt |
178 |
Q |
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| T |
4368794 |
catttctattattcaagcttagaggtacaaagtacaacttgtgtttaaatactacggt |
4368851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 178
Target Start/End: Original strand, 6522154 - 6522210
Alignment:
| Q |
123 |
tttctattattcaagtttaggatt-acaaattgcaacttgtgtttaattactacggt |
178 |
Q |
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| T |
6522154 |
tttctattattcaaacttaggatttacaaattacaacttgtgtttaaatactacggt |
6522210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 191
Target Start/End: Original strand, 10842618 - 10842687
Alignment:
| Q |
123 |
tttctattattcaagtttagga-ttacaaattgcaacttgtgtttaattactacggttcactttacaagg |
191 |
Q |
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| T |
10842618 |
tttctattattcaagcttaggatttacatattacaatttgtgtttaaatactacggtccaatttataagg |
10842687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 190
Target Start/End: Complemental strand, 31280575 - 31280507
Alignment:
| Q |
123 |
tttctattattcaagtttaggatt-acaaattgcaacttgtgtttaattactacggttcactttacaag |
190 |
Q |
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| T |
31280575 |
tttctattatccaagcttagggtttacaaattgcaacttgtgtttaaatattacggtccattttacaag |
31280507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 191
Target Start/End: Original strand, 28027051 - 28027087
Alignment:
| Q |
155 |
caacttgtgtttaattactacggttcactttacaagg |
191 |
Q |
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| T |
28027051 |
caacttgtgtttaaatactacggttcagtttacaagg |
28027087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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