View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11069A_low_227 (Length: 234)
Name: NF11069A_low_227
Description: NF11069A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11069A_low_227 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 8 - 234
Target Start/End: Complemental strand, 25014792 - 25014566
Alignment:
| Q |
8 |
tttggtgttcagataaccaggattcaatattnnnnnnnntattgatattgcggcctaaattgtagttgcaggactttttcaaattccgcggtttaaccta |
107 |
Q |
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||||| |||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |
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| T |
25014792 |
tttggagttcggataaccaggattcaatattaaaaaaaatattgatattgcggcctaaattgcagttgcaggtctttttcaaattccgcggtttaaccta |
25014693 |
T |
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| Q |
108 |
atgagtgaaannnnnnnggttctttaatttctctattgaggaataatgctaatgttaagtgttaaatattgcagagacaagcagatgtgaattcactaat |
207 |
Q |
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|||||||||| |||||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
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| T |
25014692 |
atgagtgaaatttttttagttctttaatttctctatagtggaataatgctaatgttaagtgttaaattttgcagagacaagcagacgtgaattcactaat |
25014593 |
T |
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| Q |
208 |
gctgatattggcattgttatgccattt |
234 |
Q |
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|||| | |||||||||||||||||||| |
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| T |
25014592 |
gctgcttttggcattgttatgccattt |
25014566 |
T |
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