View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11069A_low_233 (Length: 233)
Name: NF11069A_low_233
Description: NF11069A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11069A_low_233 |
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| [»] chr7 (5 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 14 - 233
Target Start/End: Original strand, 38313209 - 38313427
Alignment:
| Q |
14 |
gaaccaacaaagctgcaaacaagaatgggcccaaaaagctaaaatcatgacctctttttgcggcccaaaatgtgtagagagtcaagctgaacacaaccac |
113 |
Q |
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| T |
38313209 |
gaaccaacaaagctgcaaacaagaatgggcccaaaaagctaaaatcatgacctctttttgcggcccaaaatgtgtagagagtcaagctgaacacaaccac |
38313308 |
T |
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| Q |
114 |
agtagtcaatatgacagcttctagaattactttccctgcattcagtttcaaagatcatcagaaaacatagcaattattatattgaaaaaccatgtttatc |
213 |
Q |
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| T |
38313309 |
agtagtcaatatgacagcttctagaattactttccctgcattcagtttcaaagatcatcagaaaacatagcaattatta-attgaaaaaccatgtttatc |
38313407 |
T |
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| Q |
214 |
acaagccaacttaatcaatt |
233 |
Q |
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| T |
38313408 |
acaagccaacttaatcaatt |
38313427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 32 - 154
Target Start/End: Original strand, 38280334 - 38280456
Alignment:
| Q |
32 |
acaagaatgggcccaaaaagctaaaatcatgacctctttttgcggcccaaaatgtgtagagagtcaagctgaacacaaccacagtagtcaatatgacagc |
131 |
Q |
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| T |
38280334 |
acaagaatgggcctaaaaagctgaaatcatgacctcttcttgcggcccaaaatgtgtaaagagtcaagctgaacacaactgcagtagttgatataacaga |
38280433 |
T |
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| Q |
132 |
ttctagaattactttccctgcat |
154 |
Q |
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| T |
38280434 |
tactagaatgactttccctgcat |
38280456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 9 - 155
Target Start/End: Original strand, 38303249 - 38303395
Alignment:
| Q |
9 |
gatatgaaccaacaaagctgcaaacaagaatgggcccaaaaagctaaaatcatgacctctttttgcggcccaaaatgtgtagagagtcaagctgaacaca |
108 |
Q |
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| T |
38303249 |
gatatgaactaacaaagctccaatcaagaatggagctaaaaagctgaaatcataacatctttttgcagcccaagacgtgtagagagtcaaactcaacaca |
38303348 |
T |
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| Q |
109 |
accacagtagtcaatatgacagcttctagaattactttccctgcatt |
155 |
Q |
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| T |
38303349 |
accacattagttaatatgacagcttctaaaattacttttcctacatt |
38303395 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 14 - 154
Target Start/End: Original strand, 38275393 - 38275533
Alignment:
| Q |
14 |
gaaccaacaaagctgcaaacaagaatgggcccaaaaagctaaaatcatgacctctttttgcggcccaaaatgtgtagagagtcaagctgaacacaaccac |
113 |
Q |
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| T |
38275393 |
gaaccaacaaagcctcgaacaagaatcggcccaaaatgctgaaatcatgacctctctttgcggcccaaaatgtgtaaagagtcaagctgaacgcaactgc |
38275492 |
T |
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| Q |
114 |
agtagtcaatatgacagcttctagaattactttccctgcat |
154 |
Q |
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| T |
38275493 |
agtagttgatataacagatactagaatggctttccctgcat |
38275533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 14 - 154
Target Start/End: Original strand, 38271642 - 38271782
Alignment:
| Q |
14 |
gaaccaacaaagctgcaaacaagaatgggcccaaaaagctaaaatcatgacctctttttgcggcccaaaatgtgtagagagtcaagctgaacacaaccac |
113 |
Q |
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| T |
38271642 |
gaaccaacaaagctcccaacaagaatcggtctaaagagccgaaatcatgacctctttttgcggcccaatatgtgtaaagagtcaagctgaacacaactgc |
38271741 |
T |
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| Q |
114 |
agtagtcaatatgacagcttctagaattactttccctgcat |
154 |
Q |
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| T |
38271742 |
aatagttgatataacagatactagaattgctttccctgcat |
38271782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 29 - 147
Target Start/End: Complemental strand, 31701108 - 31700990
Alignment:
| Q |
29 |
caaacaagaatgggcccaaaaagctaaaatcatgacctctttttgcggcccaaaatgtgtagagagtca-agctgaacacaaccacagtagtcaatatga |
127 |
Q |
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|||||||||| ||||| | ||| | ||||||| ||||| |||| |||||||||||||||||||||| |||| | ||| ||||||| ||||||||| | |
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| T |
31701108 |
caaacaagaaggggccaaggaagttgaaatcatagcctctacttgcagcccaaaatgtgtagagagtcagagct-atcaccaccacagcagtcaatataa |
31701010 |
T |
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| Q |
128 |
cagcttctagaattactttc |
147 |
Q |
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| T |
31701009 |
cagcttccagaattactttc |
31700990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 138
Target Start/End: Original strand, 16238514 - 16238565
Alignment:
| Q |
86 |
tgtagagagtcaagctgaacacaaccacagtagtcaatatgacagcttctaga |
138 |
Q |
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| T |
16238514 |
tgtagagaatcaagctgaacacaacca-aatagtcaatataatagcttctaga |
16238565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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