View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11069A_low_237 (Length: 231)
Name: NF11069A_low_237
Description: NF11069A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11069A_low_237 |
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Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 13 - 221
Target Start/End: Complemental strand, 31877152 - 31876944
Alignment:
| Q |
13 |
aattagaattataatttaatcatttttctaattaggttgatcatgttaaacaagccattgcattcttttccttttcggcacataattataattattgatg |
112 |
Q |
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| T |
31877152 |
aattagaatgataatttaatcattttgctaattaggttgatcatgttaaacaagccattgcattcttttccttttcggcacataattataattattggtg |
31877053 |
T |
|
| Q |
113 |
acttgatgtggatataattgtttgtaatttaacattagaatggttttaaaaccgaactttgaaattttgggattctcacagttgttaatacgtacaaagt |
212 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31877052 |
acttgatgtggatataattgtttgtaatttaatattagaatggctttaaaaccgaactttgaaattttgggattctcacagttgttaatacgtacaaagt |
31876953 |
T |
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| Q |
213 |
gtctcattg |
221 |
Q |
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||||||||| |
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| T |
31876952 |
gtctcattg |
31876944 |
T |
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