View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11069A_low_24 (Length: 420)
Name: NF11069A_low_24
Description: NF11069A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11069A_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 2 - 273
Target Start/End: Complemental strand, 11490174 - 11489903
Alignment:
| Q |
2 |
gacacagaactcttcacaaatggtggctttgttggtgaagccaagtaattcctttctctaattcttattaataaaatcttaaactatattcatatactat |
101 |
Q |
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| T |
11490174 |
gacacagaactcttcacaaatggtggctttgttggtgaagccaagtaattcctttctctaattcttattaataaaatcttaaaatatattcatatactat |
11490075 |
T |
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| Q |
102 |
cttgtttcatttgttccacccatgaaaccggattgatataggtggaataatcacggaagaaactaaccaaggatatatagaaacactaccagctgcatat |
201 |
Q |
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| T |
11490074 |
cttgtttcatttgttccacccatgaaacaggattgatataggtggaataatcactgaaggaactaaccaaggatatatagaaacactaccagctgcatat |
11489975 |
T |
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| Q |
202 |
aatgtggttcttgaagatgacacctacaaaggacaaataaagattggatttaaattcatcgcaaatgtaagc |
273 |
Q |
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| T |
11489974 |
aatgtggttcttgaagatgacacctacaaaggacaaataaagattggatttaaattcatcgcaaatgtaagc |
11489903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 331 - 415
Target Start/End: Complemental strand, 11489820 - 11489736
Alignment:
| Q |
331 |
aatgcagagagaaaagtacgtgatgaggaatcaagaatccattgttgagaagaaagaaccaaaccattcaatttggggatacatt |
415 |
Q |
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| T |
11489820 |
aatgcagagagaaaagtatgtgatgaggaatcaagaatccattgttgagaagaaagaaccaaaccattcaatttggggatacatt |
11489736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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