View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11069A_low_241 (Length: 230)
Name: NF11069A_low_241
Description: NF11069A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11069A_low_241 |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 38400652 - 38400429
Alignment:
| Q |
1 |
aggacaggaaagaaagcatggataatttcaataattggattatgtgtaccattatgtgctttgtttttaccacttctaacattgcctggaagaatcgaag |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
38400652 |
aggacaggaaagaaagcatggataatttcaataattggattatgtgtaccattatgtgttttgtttttaccacttctaacattgcctggaagaatcgaag |
38400553 |
T |
|
| Q |
101 |
ccattcaaaaagtacatggcgggggtggaatcatagtggcaacgttatctcacagtctaagtcaattttcaacaatcgcttcacttctaagtgaacttca |
200 |
Q |
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|
|||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38400552 |
ccattcaaaaagtacacggcggcggtggaatcatagtggcaacgttatctcacagtctaagtcaattttcaacaatcgcttcacttctaagtgaacttca |
38400453 |
T |
|
| Q |
201 |
aatccaaaactcagagcttggtag |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
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|
| T |
38400452 |
aatccaaaactcagagcttggtag |
38400429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 38392063 - 38391840
Alignment:
| Q |
1 |
aggacaggaaagaaagcatggataatttcaataattggattatgtgtaccattatgtgctttgtttt-taccacttctaacattgcctggaagaatcgaa |
99 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| || ||||| ||||||| |||||||||||||| | | | || |
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|
| T |
38392063 |
aggacaggaaagagagcatggataatttcaataattggattatctgtaccattatgtg-ttggttttataccactactaacattgcctgggatagttcaa |
38391965 |
T |
|
| Q |
100 |
gccattcaaaaagtacatggcgggggtggaatcatagtggcaacgttatctcacagtctaagtcaattttcaacaatcgcttcacttctaagtgaacttc |
199 |
Q |
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|
|||||||||||| |||||||||| |||| |||| ||||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |
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| T |
38391964 |
gccattcaaaaattacatggcggcaatggagtcatggtggcaatgttatctcacagtctaagtcaattttcaacaatctcttcactcctaagtgaacttc |
38391865 |
T |
|
| Q |
200 |
aaatccaaaactcagagcttggtag |
224 |
Q |
| |
|
||||||||||||||||||||||||| |
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|
| T |
38391864 |
aaatccaaaactcagagcttggtag |
38391840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 38383205 - 38382982
Alignment:
| Q |
1 |
aggacaggaaagaaagcatggataatttcaataattggattatgtgtaccattatgtgctttgtttttaccacttctaacattgcctggaagaatcgaag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||| ||||| | |||||||||||||||| | | |||| |
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|
| T |
38383205 |
aggacaggaaagaaagcatggataatttcaataattggattttctgtaccattatgtgttttgtttataccattactaacattgcctggaaaagttgaag |
38383106 |
T |
|
| Q |
101 |
ccattcaaaaagtacatggcgggggtggaatcatagtggcaacgttatctcacagtctaagtcaattttcaacaatcgcttcacttctaagtgaacttca |
200 |
Q |
| |
|
||||||||||| || ||||||| ||||||| | ||||||| |||| |||||||||||||| |||| ||||||||||||||| |||||||||||||| |
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| T |
38383105 |
ccattcaaaaaatagatggcggcaatggaatcttggtggcaatgttaactcacagtctaagtacatttggaacaatcgcttcactcctaagtgaacttca |
38383006 |
T |
|
| Q |
201 |
aatccaaaactcagagcttggtag |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
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|
| T |
38383005 |
aatccaaaactcagagcttggtag |
38382982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 107; Significance: 9e-54; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 37839432 - 37839652
Alignment:
| Q |
1 |
aggacaggaaagaaagcatggataatttcaataattggattatgtgtaccattatgtgctttgtttt-taccacttctaacattgcctggaagaatcgaa |
99 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| || ||||| ||||||| |||||||||||||||||||||||| |
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|
| T |
37839432 |
aggacaggaaagagagcatggataatttcaataattggattatttgtaccattatgtg-ttggttttataccactactaacattgcctggaagaatcgaa |
37839530 |
T |
|
| Q |
100 |
gccattcaaaaagtacatggcgggggtggaatcatagtggcaacgttatctcacagtctaagtcaattttcaacaatcgcttcacttctaagtgaacttc |
199 |
Q |
| |
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|| ||||| ||| | ||| || | ||||||| |||| || |||| | |||||||||||||||||| ||||||| |||||||| ||||||||||||| |
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| T |
37839531 |
gcaattcataaaatgcat---ggtgatggaatcgcagtgacagtgttaacacacagtctaagtcaatttgcaacaattgcttcactactaagtgaacttc |
37839627 |
T |
|
| Q |
200 |
aaatccaaaactcagagcttggtag |
224 |
Q |
| |
|
|||| |||||||| ||||||||||| |
|
|
| T |
37839628 |
aaattcaaaactctgagcttggtag |
37839652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 149 - 224
Target Start/End: Original strand, 37845167 - 37845242
Alignment:
| Q |
149 |
ctcacagtctaagtcaattttcaacaatcgcttcacttctaagtgaacttcaaatccaaaactcagagcttggtag |
224 |
Q |
| |
|
|||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
37845167 |
ctcacagtctaagtcaatttgcaacaattgcttcactcctaagtgaacttcaaatccaaaactcagagcttggtag |
37845242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 37845034 - 37845076
Alignment:
| Q |
1 |
aggacaggaaagaaagcatggataatttcaataattggattat |
43 |
Q |
| |
|
||||| ||||||| ||||||||||||||||||||||||||||| |
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|
| T |
37845034 |
aggacgggaaagagagcatggataatttcaataattggattat |
37845076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 37831425 - 37831479
Alignment:
| Q |
1 |
aggacaggaaagaaagcatggataatttcaataattggattatgtgtaccattat |
55 |
Q |
| |
|
|||||| |||||| || ||||| ||||||||||||| ||||| |||||||||||| |
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|
| T |
37831425 |
aggacatgaaagagagtatggaaaatttcaataattagattaggtgtaccattat |
37831479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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