View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11069A_low_244 (Length: 230)

Name: NF11069A_low_244
Description: NF11069A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11069A_low_244
NF11069A_low_244
[»] chr7 (19 HSPs)
chr7 (15-215)||(10494506-10494706)
chr7 (20-215)||(13333593-13333788)
chr7 (32-215)||(8654286-8654469)
chr7 (15-215)||(8667255-8667455)
chr7 (15-207)||(8659207-8659399)
chr7 (35-183)||(1301328-1301476)
chr7 (15-192)||(17260100-17260277)
chr7 (25-192)||(17267798-17267965)
chr7 (39-183)||(3147132-3147276)
chr7 (39-171)||(8646757-8646889)
chr7 (15-194)||(27831007-27831186)
chr7 (39-183)||(6789380-6789524)
chr7 (39-80)||(8545604-8545645)
chr7 (23-80)||(8576297-8576354)
chr7 (134-204)||(8616528-8616598)
chr7 (27-80)||(8570282-8570335)
chr7 (15-80)||(29581973-29582038)
chr7 (44-80)||(7877894-7877930)
chr7 (143-215)||(8585966-8586038)
[»] chr4 (3 HSPs)
chr4 (32-215)||(9336040-9336223)
chr4 (137-192)||(30775111-30775166)
chr4 (140-209)||(35132299-35132368)
[»] chr2 (7 HSPs)
chr2 (15-207)||(16657649-16657841)
chr2 (15-217)||(7542060-7542262)
chr2 (15-215)||(14703244-14703444)
chr2 (15-215)||(12234525-12234725)
chr2 (42-207)||(43625256-43625421)
chr2 (33-84)||(11999374-11999425)
chr2 (33-84)||(12245556-12245607)
[»] chr1 (3 HSPs)
chr1 (33-205)||(4678708-4678879)
chr1 (39-192)||(15594893-15595046)
chr1 (149-189)||(34467051-34467091)
[»] chr5 (1 HSPs)
chr5 (39-183)||(28219786-28219930)
[»] chr8 (1 HSPs)
chr8 (41-215)||(43744652-43744826)


Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 15 - 215
Target Start/End: Original strand, 10494506 - 10494706
Alignment:
Q  15 tggacatcagtgggaatccaaaatccttaaggaggttgagaactgcctgtgagagggcaaaaaggatactctctttttcttttgtcaccaccgttgaggt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10494506 tggacatcagtgggaatccaaaatccttaaggaggttgagaactgcctgtgagagggcaaaaaggatactctctttttcttttgtcaccaccgttgaggt 10494605  T
Q  115 cgatgctttatttatgggaatcgacttttcttcatcaatcactcgtgccaaatttgaggaaattaatatagactttttcatcgagtgtatgaatattgtt 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10494606 cgatgctttatttatgggaatcgacttttcttcatcaatcactcgtgccaaatttgaggaaattaatatagactttttcatcgagtgtatgaatattgtt 10494705  T
Q  215 g 215  Q
    |    
T  10494706 g 10494706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 20 - 215
Target Start/End: Original strand, 13333593 - 13333788
Alignment:
Q  20 atcagtgggaatccaaaatccttaaggaggttgagaactgcctgtgagagggcaaaaaggatactctctttttcttttgtcaccaccgttgaggtcgatg 119  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||| || ||||    
T  13333593 atcagtgggaacccaaaatccttaaggaggttgagaactgcctgtgagagggaaaaaaggatactctccttttcttttgtcaccactgttgaagtagatg 13333692  T
Q  120 ctttatttatgggaatcgacttttcttcatcaatcactcgtgccaaatttgaggaaattaatatagactttttcatcgagtgtatgaatattgttg 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13333693 ctttatttatgggaatcgacttttcttcatcaatcactcgtgccaaatttgaggaaattaatatagactttttcatcgagtgtatgaatattgttg 13333788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 32 - 215
Target Start/End: Complemental strand, 8654469 - 8654286
Alignment:
Q  32 ccaaaatccttaaggaggttgagaactgcctgtgagagggcaaaaaggatactctctttttcttttgtcaccaccgttgaggtcgatgctttatttatgg 131  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||    
T  8654469 ccaaaatccttaaggaggttgagaactgcctgtgagagggcaaaaaggatactctcttttacttttgtcaccactgttgaggtagatgctttatttatgg 8654370  T
Q  132 gaatcgacttttcttcatcaatcactcgtgccaaatttgaggaaattaatatagactttttcatcgagtgtatgaatattgttg 215  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||  |||||||| ||||||||||    
T  8654369 gaatcgacttttcttcatcaatcactcgtgctaaatttgaggaaattaatatggactttttcaatgagtgtatcaatattgttg 8654286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 15 - 215
Target Start/End: Complemental strand, 8667455 - 8667255
Alignment:
Q  15 tggacatcagtgggaatccaaaatccttaaggaggttgagaactgcctgtgagagggcaaaaaggatactctctttttcttttgtcaccaccgttgaggt 114  Q
    |||||||||||  ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||    
T  8667455 tggacatcagtcagaacccaaaatccttaaggaggttgagaactgcctgtgagagggcaaaaaggatactctcttttgcttttgttaccactgttgaggt 8667356  T
Q  115 cgatgctttatttatgggaatcgacttttcttcatcaatcactcgtgccaaatttgaggaaattaatatagactttttcatcgagtgtatgaatattgtt 214  Q
     ||||||||||||| |||||||||||||| ||||||||| |||||||| |||||||||||| |||| || ||||||||||  |||||||||||||| |||    
T  8667355 agatgctttatttacgggaatcgacttttgttcatcaattactcgtgctaaatttgaggaacttaacatggactttttcaatgagtgtatgaatatagtt 8667256  T
Q  215 g 215  Q
    |    
T  8667255 g 8667255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 15 - 207
Target Start/End: Complemental strand, 8659399 - 8659207
Alignment:
Q  15 tggacatcagtgggaatccaaaatccttaaggaggttgagaactgcctgtgagagggcaaaaaggatactctctttttcttttgtcaccaccgttgaggt 114  Q
    ||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||| ||||||||    
T  8659399 tggacattagtggtaacccaaaatccttaaggaggttgagaactgcctgtgagagggcaaagaggacactctcttttgcttttgtcaccactgttgaggt 8659300  T
Q  115 cgatgctttatttatgggaatcgacttttcttcatcaatcactcgtgccaaatttgaggaaattaatataga-ctttttcatcgagtgtatgaa 207  Q
    |||| ||||||||  |||||| ||||| | ||||| ||||||||||||||  ||||||||||| ||||| || |||||| || |||||||||||    
T  8659299 cgattctttatttcagggaatagacttctgttcattaatcactcgtgccaggtttgaggaaatgaatatggatctttttaat-gagtgtatgaa 8659207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 35 - 183
Target Start/End: Complemental strand, 1301476 - 1301328
Alignment:
Q  35 aaatccttaaggaggttgagaactgcctgtgagagggcaaaaaggatactctctttttcttttgtcaccaccgttgaggtcgatgctttatttatgggaa 134  Q
    |||||||||||||||||||||| ||| ||||||||||||||||||| |||||||||| |||| ||||||||||||||||||||| ||||||||  |||||    
T  1301476 aaatccttaaggaggttgagaattgcgtgtgagagggcaaaaaggacactctcttttgctttagtcaccaccgttgaggtcgattctttatttcagggaa 1301377  T
Q  135 tcgacttttcttcatcaatcactcgtgccaaatttgaggaaattaatat 183  Q
    ||||||| | ||||| ||||||||||||||| |||||||||||||||||    
T  1301376 tcgacttctgttcattaatcactcgtgccaagtttgaggaaattaatat 1301328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 15 - 192
Target Start/End: Complemental strand, 17260277 - 17260100
Alignment:
Q  15 tggacatcagtgggaatccaaaatccttaaggaggttgagaactgcctgtgagagggcaaaaaggatactctctttttcttttgtcaccaccgttgaggt 114  Q
    ||||||| | |||||| |||||| |||||||||||||||||||||| ||||| |  |||||||||| ||| |||||| | | ||| ||||  ||||||||    
T  17260277 tggacattattgggaacccaaaagccttaaggaggttgagaactgcatgtgaaaaagcaaaaaggacactttcttttgcctctgtgaccaatgttgaggt 17260178  T
Q  115 cgatgctttatttatgggaatcgacttttcttcatcaatcactcgtgccaaatttgaggaaattaatatagacttttt 192  Q
     || |||||||||| |||  |  | |||||||| ||||||||||||||||| ||||| ||||| ||||| ||| ||||    
T  17260177 agacgctttatttaagggtgttaatttttcttcgtcaatcactcgtgccaagtttgaagaaatcaatatggacctttt 17260100  T

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Target: chr7; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 25 - 192
Target Start/End: Complemental strand, 17267965 - 17267798
Alignment:
Q  25 tgggaatccaaaatccttaaggaggttgagaactgcctgtgagagggcaaaaaggatactctctttttcttttgtcaccaccgttgaggtcgatgcttta 124  Q
    |||||| |||||| || | ||||||||||||||||| ||||| |  |||||||||| ||| |||||  | | ||| ||||  |||||||| || ||||||    
T  17267965 tgggaacccaaaagccatgaggaggttgagaactgcatgtgaaaaagcaaaaaggacactttctttcgcctctgtgaccaatgttgaggtagacgcttta 17267866  T
Q  125 tttatgggaatcgacttttcttcatcaatcactcgtgccaaatttgaggaaattaatatagacttttt 192  Q
    |||| |||  | || |||||||| ||||||||||||||||| ||||||||||| ||||| ||| ||||    
T  17267865 tttaagggtgttgatttttcttcgtcaatcactcgtgccaagtttgaggaaatcaatatggacctttt 17267798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 39 - 183
Target Start/End: Complemental strand, 3147276 - 3147132
Alignment:
Q  39 ccttaaggaggttgagaactgcctgtgagagggcaaaaaggatactctctttttcttttgtcaccaccgttgaggtcgatgctttatttatgggaatcga 138  Q
    ||||||||||||||| ||| || ||||| || |||||| | ||||| |||||| || |  |||||||| ||||| | ||| ||||||||  |||| | ||    
T  3147276 ccttaaggaggttgaaaacggcgtgtgaaagagcaaaacgaatactatcttttgctgtcatcaccaccattgagatagattctttatttcagggatttga 3147177  T
Q  139 cttttcttcatcaatcactcgtgccaaatttgaggaaattaatat 183  Q
    ||| | ||||||||||||||||||||| ||||||||||| |||||    
T  3147176 cttattttcatcaatcactcgtgccaagtttgaggaaatcaatat 3147132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 39 - 171
Target Start/End: Complemental strand, 8646889 - 8646757
Alignment:
Q  39 ccttaaggaggttgagaactgcctgtgagagggcaaaaaggatactctctttttcttttgtcaccaccgttgaggtcgatgctttatttatgggaatcga 138  Q
    ||||||||||||||||||| || || ||||| |||||||||| ||| |||||| ||| |  ||||||| ||||  | ||| |||||||||  || || ||    
T  8646889 ccttaaggaggttgagaacggcatgcgagagagcaaaaaggacactatcttttgcttcttgcaccaccattgaattagattctttatttaatggcattga 8646790  T
Q  139 cttttcttcatcaatcactcgtgccaaatttga 171  Q
    ||||  |||||||||||||||||||||||||||    
T  8646789 ctttatttcatcaatcactcgtgccaaatttga 8646757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 15 - 194
Target Start/End: Original strand, 27831007 - 27831186
Alignment:
Q  15 tggacatcagtgggaatccaaaatccttaaggaggttgagaactgcctgtgagagggcaaaaaggatactctctttttcttttgtcaccaccgttgaggt 114  Q
    ||||||| |||||||| |||| | |||| |||||| |||||||    ||||||| ||||||||||| ||||||||||||| ||| ||| ||  ||||| |    
T  27831007 tggacattagtgggaacccaagagccttgaggaggctgagaacctaatgtgagaaggcaaaaaggacactctctttttctgttgacactactattgagat 27831106  T
Q  115 cgatgctttatttatgggaatcgacttttcttcatcaatcactcgtgccaaatttgaggaaattaatatagactttttca 194  Q
     ||||| ||||||  ||| || ||||| | ||||   ||||||||||| || ||||||||||| ||||| ||| ||||||    
T  27831107 agatgccttatttgagggcattgacttcttttcaatgatcactcgtgcaaagtttgaggaaatcaatatggaccttttca 27831186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 39 - 183
Target Start/End: Complemental strand, 6789524 - 6789380
Alignment:
Q  39 ccttaaggaggttgagaactgcctgtgagagggcaaaaaggatactctctttttcttttgtcaccaccgttgaggtcgatgctttatttatgggaatcga 138  Q
    ||||||| |||||||||||||| ||||| ||||| |||||| |||||||||||  | | ||||| ||  ||||||| ||  ||||||||  ||| |||||    
T  6789524 ccttaagaaggttgagaactgcgtgtgaaagggccaaaagggtactctcttttgttgtcgtcactactattgaggtagactctttatttcagggcatcga 6789425  T
Q  139 cttttcttcatcaatcactcgtgccaaatttgaggaaattaatat 183  Q
    |||   ||||||| | ||||| ||||| ||||||||||| |||||    
T  6789424 cttcatttcatcacttactcgggccaagtttgaggaaatcaatat 6789380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 80
Target Start/End: Complemental strand, 8545645 - 8545604
Alignment:
Q  39 ccttaaggaggttgagaactgcctgtgagagggcaaaaagga 80  Q
    |||| ||||||||||||||||||||||||| |||||||||||    
T  8545645 ccttgaggaggttgagaactgcctgtgagaaggcaaaaagga 8545604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 80
Target Start/End: Complemental strand, 8576354 - 8576297
Alignment:
Q  23 agtgggaatccaaaatccttaaggaggttgagaactgcctgtgagagggcaaaaagga 80  Q
    |||| |||| ||||| |||||||||||||||||||||| ||||| | |||||||||||    
T  8576354 agtgagaattcaaaagccttaaggaggttgagaactgcttgtgaaaaggcaaaaagga 8576297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 204
Target Start/End: Complemental strand, 8616598 - 8616528
Alignment:
Q  134 atcgacttttcttcatcaatcactcgtgccaaatttgaggaaattaatatagactttttcatcgagtgtat 204  Q
    ||||| || |||||||||||||||||||  || ||||||||||| ||||| ||| |||| | |||||||||    
T  8616598 atcgatttctcttcatcaatcactcgtgttaagtttgaggaaatcaatatggacctttttaacgagtgtat 8616528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 80
Target Start/End: Complemental strand, 8570335 - 8570282
Alignment:
Q  27 ggaatccaaaatccttaaggaggttgagaactgcctgtgagagggcaaaaagga 80  Q
    |||| |||||| |||| |||||||| ||||| || |||||||||||||||||||    
T  8570335 ggaacccaaaagccttgaggaggttaagaacagcttgtgagagggcaaaaagga 8570282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 80
Target Start/End: Original strand, 29581973 - 29582038
Alignment:
Q  15 tggacatcagtgggaatccaaaatccttaaggaggttgagaactgcctgtgagagggcaaaaagga 80  Q
    ||||||| |||||||| |||||| | ||||||| | ||||||| || |||||||||||||| ||||    
T  29581973 tggacattagtgggaacccaaaagctttaaggaagctgagaacagcttgtgagagggcaaagagga 29582038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 80
Target Start/End: Original strand, 7877894 - 7877930
Alignment:
Q  44 aggaggttgagaactgcctgtgagagggcaaaaagga 80  Q
    ||||||||||||||||| ||||||||||| |||||||    
T  7877894 aggaggttgagaactgcatgtgagagggctaaaagga 7877930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 215
Target Start/End: Original strand, 8585966 - 8586038
Alignment:
Q  143 tcttcatcaatcactcgtgccaaatttgaggaaattaatatagactttttcatcgagtgtatgaatattgttg 215  Q
    |||||||||||||| |||| ||| ||||||||||| ||||| ||| |||| |  |||||||| |||| |||||    
T  8585966 tcttcatcaatcacgcgtgtcaagtttgaggaaatcaatatggacctttttaatgagtgtataaatactgttg 8586038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 144; Significance: 7e-76; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 32 - 215
Target Start/End: Original strand, 9336040 - 9336223
Alignment:
Q  32 ccaaaatccttaaggaggttgagaactgcctgtgagagggcaaaaaggatactctctttttcttttgtcaccaccgttgaggtcgatgctttatttatgg 131  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||| |||||||| ||||||||||||||||    
T  9336040 ccaaaatccttaaggaggttgagaactgcctgtgagagggcaaaaaggatactgtcttttgcttttgttaccactgttgaggtagatgctttatttatgg 9336139  T
Q  132 gaatcgacttttcttcatcaatcactcgtgccaaatttgaggaaattaatatagactttttcatcgagtgtatgaatattgttg 215  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||  |||||||||||||||||||    
T  9336140 gaatcgacttttcttcatcaatcactcgtgccaaatttgaggaacttaacatggactttttcaatgagtgtatgaatattgttg 9336223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 192
Target Start/End: Complemental strand, 30775166 - 30775111
Alignment:
Q  137 gacttttcttcatcaatcactcgtgccaaatttgaggaaattaatatagacttttt 192  Q
    ||||||||||||||||||||||||| ||| ||||||||||| ||||| ||| ||||    
T  30775166 gacttttcttcatcaatcactcgtgtcaagtttgaggaaatcaatatggacctttt 30775111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 209
Target Start/End: Complemental strand, 35132368 - 35132299
Alignment:
Q  140 ttttcttcatcaatcactcgtgccaaatttgaggaaattaatatagactttttcatcgagtgtatgaata 209  Q
    |||||||||||||||| ||| ||||| ||||||||||| |||  |||| |||| |  |||||||||||||    
T  35132368 ttttcttcatcaatcaatcgcgccaagtttgaggaaatgaatgcagacctttttaatgagtgtatgaata 35132299  T

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Target: chr2 (Bit Score: 101; Significance: 3e-50; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 15 - 207
Target Start/End: Original strand, 16657649 - 16657841
Alignment:
Q  15 tggacatcagtgggaatccaaaatccttaaggaggttgagaactgcctgtgagagggcaaaaaggatactctctttttcttttgtcaccaccgttgaggt 114  Q
    ||||||| ||||||||  ||| | |||| ||||||||||||||||| |||||||||||||| |||| |||||||||| ||||||||||||| ||||||||    
T  16657649 tggacataagtgggaactcaagagccttgaggaggttgagaactgcatgtgagagggcaaagaggacactctcttttgcttttgtcaccactgttgaggt 16657748  T
Q  115 cgatgctttatttatgggaatcgacttttcttcatcaatcactcgtgccaaatttgaggaaattaatatagactttttcatcgagtgtatgaa 207  Q
     ||| ||||||||  |||||| |||||||||||||||||||| |||||||| ||||||||||||||||| ||  ||||||  |||||||||||    
T  16657749 agattctttatttcagggaattgacttttcttcatcaatcacccgtgccaagtttgaggaaattaatatggatcttttcaatgagtgtatgaa 16657841  T

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Target: chr2; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 15 - 217
Target Start/End: Complemental strand, 7542262 - 7542060
Alignment:
Q  15 tggacatcagtgggaatccaaaatccttaaggaggttgagaactgcctgtgagagggcaaaaaggatactctctttttcttttgtcaccaccgttgaggt 114  Q
    ||||||| ||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||   ||| |||||   | ||||  ||||  |||||||    
T  7542262 tggacattagtgggaatccaaaagccttgaggaggttgagaactgcttgtgagagggcaaaaagatcactttctttccttgttgttgccactattgaggt 7542163  T
Q  115 cgatgctttatttatgggaatcgacttttcttcatcaatcactcgtgccaaatttgaggaaattaatatagactttttcatcgagtgtatgaatattgtt 214  Q
     ||| ||||||||   || || |||||||||||||| |||| | | ||||| |||||||| || ||||| ||  |||| | |||||||||||  ||||||    
T  7542162 agattctttatttcaaggcattgacttttcttcatcgatcaatagggccaagtttgaggagatgaatatggatctttttaacgagtgtatgacgattgtt 7542063  T
Q  215 gga 217  Q
    |||    
T  7542062 gga 7542060  T

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Target: chr2; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 15 - 215
Target Start/End: Complemental strand, 14703444 - 14703244
Alignment:
Q  15 tggacatcagtgggaatccaaaatccttaaggaggttgagaactgcctgtgagagggcaaaaaggatactctctttttcttttgtcaccaccgttgaggt 114  Q
    ||||||| ||||| ||||||||| |||||||||| |||||||| || || |||||||||||||| | ||| |||||     ||||| ||||  |||||||    
T  14703444 tggacattagtggaaatccaaaagccttaaggagcttgagaaccgcttgcgagagggcaaaaagaacactttctttccaagttgtcgccactattgaggt 14703345  T
Q  115 cgatgctttatttatgggaatcgacttttcttcatcaatcactcgtgccaaatttgaggaaattaatatagactttttcatcgagtgtatgaatattgtt 214  Q
     ||||||||||||    | || |||||||||||||| |||| | | ||||| ||||| ||||| ||||| |||||||| |  |||||| |||| ||||||    
T  14703344 agatgctttatttcaatgcattgacttttcttcatcgatcaatagggccaagtttgaagaaatgaatatggacttttttaatgagtgtgtgaagattgtt 14703245  T
Q  215 g 215  Q
    |    
T  14703244 g 14703244  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 215
Target Start/End: Complemental strand, 12234725 - 12234525
Alignment:
Q  15 tggacatcagtgggaatccaaaatccttaaggaggttgagaactgcctgtgagagggcaaaaaggatactctctttttcttttgtcaccaccgttgaggt 114  Q
    ||||||| ||||| ||||||||| |||| |||||||| |||||||| |||||||||||||||||   | | |||||   | ||||  | ||| |||||||    
T  12234725 tggacatgagtggaaatccaaaagccttgaggaggttaagaactgcttgtgagagggcaaaaagatcattgtctttccttgttgttgcaaccattgaggt 12234626  T
Q  115 cgatgctttatttatgggaatcgacttttcttcatcaatcactcgtgccaaatttgaggaaattaatatagactttttcatcgagtgtatgaatattgtt 214  Q
     ||| ||||||||   || || || ||||||||||| |||| | | ||||| ||||||||||| ||||| ||  || | || ||||||||||| ||||||    
T  12234625 agattctttatttgaaggcattgatttttcttcatcgatcaatagggccaagtttgaggaaatgaatatggatcttcttattgagtgtatgaagattgtt 12234526  T
Q  215 g 215  Q
    |    
T  12234525 g 12234525  T

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Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 207
Target Start/End: Complemental strand, 43625421 - 43625256
Alignment:
Q  42 taaggaggttgagaactgcctgtgagagggcaaaaaggatactctctttttcttttgtcaccaccgttgaggtcgatgctttatttatgggaatcgactt 141  Q
    |||| ||||||||||| || || ||||| | |||||||| ||| |||||| |||   ||| |||  ||||||| ||| |||||||    || || |||||    
T  43625421 taagaaggttgagaacggcatgcgagagaggaaaaaggacactgtcttttgcttcgttcagcactattgaggtagattctttattccgtggtattgactt 43625322  T
Q  142 ttcttcatcaatcactcgtgccaaatttgaggaaattaatatagactttttcatcgagtgtatgaa 207  Q
     | ||||||||||||||||||||||||||| ||||| ||||| ||  |||||| ||||||| ||||    
T  43625321 cttttcatcaatcactcgtgccaaatttgatgaaataaatatggatcttttcaacgagtgtttgaa 43625256  T

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Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 84
Target Start/End: Complemental strand, 11999425 - 11999374
Alignment:
Q  33 caaaatccttaaggaggttgagaactgcctgtgagagggcaaaaaggatact 84  Q
    ||||| |||| ||||||||||||||||| ||||||||||||||||| |||||    
T  11999425 caaaagccttgaggaggttgagaactgcttgtgagagggcaaaaagaatact 11999374  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 84
Target Start/End: Original strand, 12245556 - 12245607
Alignment:
Q  33 caaaatccttaaggaggttgagaactgcctgtgagagggcaaaaaggatact 84  Q
    ||||| |||| ||||| ||||||||||| ||||||||||||||||| |||||    
T  12245556 caaaagccttgaggagattgagaactgcttgtgagagggcaaaaagaatact 12245607  T

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Target: chr1 (Bit Score: 89; Significance: 5e-43; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 33 - 205
Target Start/End: Original strand, 4678708 - 4678879
Alignment:
Q  33 caaaatccttaaggaggttgagaactgcctgtgagagggcaaaaaggatactctctttttcttttgtcaccaccgttgaggtcgatgctttatttatggg 132  Q
    ||||| ||||||||||||||||||||||||| ||||||||||| |||| |||||||||  | ||||||||||| |||||| | ||| ||||||||  |||    
T  4678708 caaaacccttaaggaggttgagaactgcctgcgagagggcaaagaggacactctctttcgcctttgtcaccactgttgag-tagattctttatttcaggg 4678806  T
Q  133 aatcgacttttcttcatcaatcactcgtgccaaatttgaggaaattaatatagactttttcatcgagtgtatg 205  Q
    ||| |||||||||||||| || ||||||||||| ||||||||||||||||| ||| |||||| ||||||||||    
T  4678807 aatagacttttcttcatctattactcgtgccaagtttgaggaaattaatatggaccttttcaacgagtgtatg 4678879  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 192
Target Start/End: Complemental strand, 15595046 - 15594893
Alignment:
Q  39 ccttaaggaggttgagaactgcctgtgagagggcaaaaaggatactctctttttcttttgtcaccaccgttgaggtcgatgctttatttatgggaatcga 138  Q
    |||| ||||| ||||||||||| || || |||||||||||| ||||||||||| ||  |||||| ||| ||||||| |||  ||||||||  || || ||    
T  15595046 ccttgaggagattgagaactgcgtgcgaaagggcaaaaagggtactctcttttactactgtcactaccattgaggtagattgtttatttaacggtattga 15594947  T
Q  139 cttttcttcatcaatcactcgtgccaaatttgaggaaattaatatagacttttt 192  Q
    ||| | ||||||  | |||||| |||| ||||| ||||| || || ||||||||    
T  15594946 cttcttttcatcggttactcgttccaagtttgaagaaatcaacatggacttttt 15594893  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 189
Target Start/End: Original strand, 34467051 - 34467091
Alignment:
Q  149 tcaatcactcgtgccaaatttgaggaaattaatatagactt 189  Q
    ||||||||||||||||| ||||||||||| ||||| |||||    
T  34467051 tcaatcactcgtgccaagtttgaggaaatcaatatggactt 34467091  T

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Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 39 - 183
Target Start/End: Complemental strand, 28219930 - 28219786
Alignment:
Q  39 ccttaaggaggttgagaactgcctgtgagagggcaaaaaggatactctctttttcttttgtcaccaccgttgaggtcgatgctttatttatgggaatcga 138  Q
    ||||||||||||||||||| || ||  |||| |||||||||| ||| |||||| || ||||| ||||| ||||||| ||| ||||||||   || || ||    
T  28219930 ccttaaggaggttgagaacagcgtgcaagagagcaaaaaggacactatcttttgctgttgtcgccaccattgaggtagattctttatttgaaggcattga 28219831  T
Q  139 cttttcttcatcaatcactcgtgccaaatttgaggaaattaatat 183  Q
     || | ||||||||| |||||||| || ||||||||||| |||||    
T  28219830 tttcttttcatcaattactcgtgctaagtttgaggaaatcaatat 28219786  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 41 - 215
Target Start/End: Complemental strand, 43744826 - 43744652
Alignment:
Q  41 ttaaggaggttgagaactgcctgtgagagggcaaaaaggatactctctttttcttttgtcaccaccgttgaggtcgatgctttatttatgggaatcgact 140  Q
    ||||||||||||||||| || || || || |||||||||| | | |||||| || ||||||||||  ||||||| ||| ||||||||  ||| || || |    
T  43744826 ttaaggaggttgagaacagcatgcgaaagagcaaaaaggacattatcttttgctgttgtcaccactattgaggtagattctttatttgagggcattgatt 43744727  T
Q  141 tttcttcatcaatcactcgtgccaaatttgaggaaattaatatagactttttcatcgagtgtatgaatattgttg 215  Q
    | | | || ||||||||||| | || ||||||||||| ||||| ||  | |||| ||||||| |||| |||||||    
T  43744726 tctttacaacaatcactcgtactaagtttgaggaaatcaatatggatctcttcaacgagtgtttgaaaattgttg 43744652  T

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