View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11069A_low_248 (Length: 230)
Name: NF11069A_low_248
Description: NF11069A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11069A_low_248 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 5484673 - 5484450
Alignment:
| Q |
1 |
ataccttaactgtttaattaataggaaaagattacaaaacatataaatgccaacttctggaaataatcaatctctaggaattatgtactgttaaaaacat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5484673 |
ataccttaactgtttaattaataggaaaagattacaaaacatataaatgccaacttctggaaataatcaatctctaggaattatgtactgttaaaaacat |
5484574 |
T |
|
| Q |
101 |
aaaattacgcggcattaataattctcttttcacttttccctatagatcttttttccttctttatctgcttcttgactgacatttacttcaaactacagat |
200 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
5484573 |
aaaattacgtggcattaataattctcttttcacttttccctgtagatcttttttccttctttatctgcttcttgaatgacatttacttcaacctacagat |
5484474 |
T |
|
| Q |
201 |
catataaagaatacgagaaacttg |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
5484473 |
catataaagaatacgagaaacttg |
5484450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 36 - 100
Target Start/End: Complemental strand, 5525652 - 5525588
Alignment:
| Q |
36 |
aaaacatataaatgccaacttctggaaataatcaatctctaggaattatgtactgttaaaaacat |
100 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||||| ||||||||||| |||| ||| ||||||| |
|
|
| T |
5525652 |
aaaacacataaatgccaacttctgaaaataatcaacctctaggaattgagtaccgttcaaaacat |
5525588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 222
Target Start/End: Complemental strand, 5525557 - 5525497
Alignment:
| Q |
162 |
tatctgcttcttgactgacatttacttcaaactacagatcatataaagaatacgagaaact |
222 |
Q |
| |
|
||||||||| |||||||||||||||||||| | ||||||||| |||||||| ||| |||| |
|
|
| T |
5525557 |
tatctgcttgttgactgacatttacttcaaccatcagatcataaaaagaataagaggaact |
5525497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 5525716 - 5525676
Alignment:
| Q |
2 |
taccttaactgtttaattaataggaaaagattacaaaacat |
42 |
Q |
| |
|
||||||||| |||||||||||||||| |||||||||||||| |
|
|
| T |
5525716 |
taccttaacagtttaattaataggaatagattacaaaacat |
5525676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 224
Target Start/End: Complemental strand, 20343390 - 20343322
Alignment:
| Q |
156 |
cttctttatctgcttcttgactgacatttacttcaaactacagatcatataaagaatacgagaaacttg |
224 |
Q |
| |
|
||||| || |||||| |||||||||||||| ||||| | ||||||||| |||||||| ||| |||||| |
|
|
| T |
20343390 |
cttctatacctgcttgttgactgacatttatttcaaccctcagatcataaaaagaataagaggaacttg |
20343322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University