View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11069A_low_251 (Length: 230)
Name: NF11069A_low_251
Description: NF11069A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11069A_low_251 |
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| [»] scaffold0945 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 24546259 - 24546483
Alignment:
| Q |
1 |
gcagaaagaacattggggagcaccccattaatagaaggtgcatcttgtacgttggtgcaatctgtcgccttgaaagataccacttgcctt-ccacatcaa |
99 |
Q |
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| T |
24546259 |
gcagaaagaacattggggagcaccccattaatagaaggtgcatcttgtaggttggtgcaatctgtcgccttgaaagataccagttgcttttccaaatcaa |
24546358 |
T |
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| Q |
100 |
acccaatcaaataattggactgagcatggtttccataaatgccatattcgttactaaaagtgctggtgaatgcaaagcagaaaataccatcttgtaccgg |
199 |
Q |
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| T |
24546359 |
acccaatcaaataatttgactgagcatggtttccataaatgccatattcgttactaaaagtgctggtgaatgcaaagcaaaaaataccatcttgtaccgg |
24546458 |
T |
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| Q |
200 |
aatgaagatttgagtgggcgttaaa |
224 |
Q |
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| T |
24546459 |
aatgaagatttgggtgggcgttaaa |
24546483 |
T |
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Target: chr2; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 52 - 223
Target Start/End: Original strand, 24538936 - 24539105
Alignment:
| Q |
52 |
ttggtgcaatctgtcgccttgaaagataccacttgcctt-ccacatcaaacccaatcaaataattggactgagcatggtttccataaatgccatattcgt |
150 |
Q |
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| T |
24538936 |
ttggtgcaatctgttgccttgaaagaaaccacctgcctttccaaatcaaacccaatcaaatagtttgactgggcatagtttccataagtgacatattctt |
24539035 |
T |
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| Q |
151 |
tactaaaagtgctggtgaatgcaaagcagaaaataccatcttgtaccggaatgaagatttgagtgggcgttaa |
223 |
Q |
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| T |
24539036 |
catt---agtgtcgaagactgcgaagcagaaattatcatcttgtaccggaatgaacatttgagcgggcgttaa |
24539105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0945 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: scaffold0945
Description:
Target: scaffold0945; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 36 - 224
Target Start/End: Complemental strand, 583 - 394
Alignment:
| Q |
36 |
aggtgcatcttgtacgttggtgcaatctgtcgccttgaaagataccacttgcctt-ccacatcaaacccaatcaaataattggactgagcatggtttcca |
134 |
Q |
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|||||||||||||| ||||||||||||||| ||||||||||| ||||||||| || ||| ||||||||||||||||||||| ||||| ||| | ||||| |
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| T |
583 |
aggtgcatcttgtaagttggtgcaatctgtggccttgaaagaaaccacttgcttttccaaatcaaacccaatcaaataatttgactgcacatagcttcca |
484 |
T |
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| Q |
135 |
taaatgccatattcgttactaaaagtgctggtgaatgcaaagcagaaaataccatcttgtaccggaatgaagatttgagtgggcgttaaa |
224 |
Q |
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| T |
483 |
taagtgccatattcgttactaaaagagctggtgaatgcaaagcagaaaataccatattgtaccggaatgaagatttgagttggcgttaaa |
394 |
T |
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