View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11069A_low_257 (Length: 229)
Name: NF11069A_low_257
Description: NF11069A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11069A_low_257 |
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Alignment Details
Target: chr7 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 65 - 210
Target Start/End: Original strand, 41429394 - 41429539
Alignment:
| Q |
65 |
aaaactggttcgtaattaatttggcaaaaccaacctgatctataatatagtgacccgtcagtgatcacccaaatgcattgagttgttacaaattgacagt |
164 |
Q |
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| T |
41429394 |
aaaactggttcgtaattaattgggcaaatccaacctgatctataatatagtgacccgtcagtgatcacccaaatgcattgagttgttacaaattgacagt |
41429493 |
T |
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| Q |
165 |
tttaatgatagaatgtttgagttttcctgtaaagacgagttatatt |
210 |
Q |
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| T |
41429494 |
tttaatgatagaatgtttgagttttcctgtaaagacgagttatatt |
41429539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 41429309 - 41429369
Alignment:
| Q |
21 |
gaaaattcatatgtcaaaaaatcaaaagaacgaaaataagatggaaaactggttcgtaatt |
81 |
Q |
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| T |
41429309 |
gaaaattcatatgtcaaaaaatcaaaagaacgaaaataagatggaaaactggttcgtaatt |
41429369 |
T |
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