View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11069A_low_259 (Length: 229)

Name: NF11069A_low_259
Description: NF11069A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11069A_low_259
NF11069A_low_259
[»] chr4 (3 HSPs)
chr4 (5-223)||(9944166-9944384)
chr4 (91-197)||(19695118-19695224)
chr4 (91-197)||(19705703-19705809)
[»] chr8 (3 HSPs)
chr8 (97-202)||(29921634-29921739)
chr8 (97-197)||(3343410-3343510)
chr8 (111-165)||(26358571-26358625)
[»] scaffold1171 (1 HSPs)
scaffold1171 (91-197)||(134-240)
[»] scaffold0250 (1 HSPs)
scaffold0250 (97-197)||(25201-25301)
[»] chr2 (1 HSPs)
chr2 (97-197)||(17099120-17099220)
[»] chr1 (1 HSPs)
chr1 (97-197)||(20590372-20590472)
[»] chr3 (2 HSPs)
chr3 (1-197)||(11332537-11332735)
chr3 (97-197)||(14767073-14767173)
[»] scaffold0008 (1 HSPs)
scaffold0008 (111-176)||(271654-271719)
[»] chr5 (1 HSPs)
chr5 (111-176)||(180543-180608)
[»] chr6 (1 HSPs)
chr6 (111-169)||(20895060-20895118)


Alignment Details
Target: chr4 (Bit Score: 167; Significance: 1e-89; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 5 - 223
Target Start/End: Complemental strand, 9944384 - 9944166
Alignment:
Q  5 aaattccctcttgcatgcattaaagcatacatatcctttcaaacactggccctgcatctccaactgcacatttaatcctatcagtgctacctggattact 104  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||| | |||| |    
T  9944384 aaatgccctcttgcatgcattaaagcatacatatcctttcaaacactggtcctgcatctccaactgcacatttaatcctaacaatgctacccgaattaat 9944285  T
Q  105 cctcatcaattcctcagcataatttctaagatgagaatattgctcatctattccaccatgaatcagttccaaagccttattcttagccctataaatctta 204  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||    
T  9944284 cctcatcaattcctcaacataatttctaagatgagaatatttctcatctattccaccatgaatcagttccgaagccttattcttagccctacaaagctta 9944185  T
Q  205 atgtgactcaacataactc 223  Q
    | |||||||||||||||||    
T  9944184 aagtgactcaacataactc 9944166  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 91 - 197
Target Start/End: Complemental strand, 19695224 - 19695118
Alignment:
Q  91 ctacctggattactcctcatcaattcctcagcataatttctaagatgagaatattgctcatctattccaccatgaatcagttccaaagccttattcttag 190  Q
    ||||| ||||| ||||||| ||||||||||||||| ||||  ||||  | |||||| ||||||||  ||||||| || ||||| |||||||| |||||||    
T  19695224 ctaccaggattgctcctcaacaattcctcagcatagtttcacagatatgcatattgttcatctatggcaccatggataagttctaaagccttcttcttag 19695125  T
Q  191 ccctata 197  Q
    |||||||    
T  19695124 ccctata 19695118  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 91 - 197
Target Start/End: Complemental strand, 19705809 - 19705703
Alignment:
Q  91 ctacctggattactcctcatcaattcctcagcataatttctaagatgagaatattgctcatctattccaccatgaatcagttccaaagccttattcttag 190  Q
    ||||| ||||| ||||||| ||||||||||||||| ||||  ||||  | |||||| ||||||||  ||||||| || ||||| |||||||| |||||||    
T  19705809 ctaccaggattgctcctcaacaattcctcagcatagtttcacagatatgcatattgttcatctatggcaccatggataagttctaaagccttcttcttag 19705710  T
Q  191 ccctata 197  Q
    |||||||    
T  19705709 ccctata 19705703  T

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Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 97 - 202
Target Start/End: Original strand, 29921634 - 29921739
Alignment:
Q  97 ggattactcctcatcaattcctcagcataatttctaagatgagaatattgctcatctattccaccatgaatcagttccaaagccttattcttagccctat 196  Q
    |||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||| ||||||| || ||||  |||||||| |||||||||||||    
T  29921634 ggattactcctcatcaattcttcagcataatttctgagatgagcatattgctcatctattgcaccatggataagttttaaagccttcttcttagccctat 29921733  T
Q  197 aaatct 202  Q
    | ||||    
T  29921734 atatct 29921739  T

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Target: chr8; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 97 - 197
Target Start/End: Original strand, 3343410 - 3343510
Alignment:
Q  97 ggattactcctcatcaattcctcagcataatttctaagatgagaatattgctcatctattccaccatgaatcagttccaaagccttattcttagccctat 196  Q
    ||||| ||||||| ||||||||||||||| ||||| ||||| |||||||||||||||||  ||||||| || ||||| |||||||| |||||||||||||    
T  3343410 ggattgctcctcaacaattcctcagcatagtttctcagatgcgaatattgctcatctatggcaccatggataagttctaaagccttcttcttagccctat 3343509  T
Q  197 a 197  Q
    |    
T  3343510 a 3343510  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 111 - 165
Target Start/End: Complemental strand, 26358625 - 26358571
Alignment:
Q  111 caattcctcagcataatttctaagatgagaatattgctcatctattccaccatga 165  Q
    ||||||||||||||||||  ||||||||| |||||||||||||||  ||||||||    
T  26358625 caattcctcagcataattcttaagatgagcatattgctcatctatagcaccatga 26358571  T

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Target: scaffold1171 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold1171
Description:

Target: scaffold1171; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 91 - 197
Target Start/End: Original strand, 134 - 240
Alignment:
Q  91 ctacctggattactcctcatcaattcctcagcataatttctaagatgagaatattgctcatctattccaccatgaatcagttccaaagccttattcttag 190  Q
    ||||| ||||| ||||||| ||||||||||||||| ||||| ||||| | ||||||||||||||| |||||||| || ||||| |||||||| |||||||    
T  134 ctaccaggattgctcctcaacaattcctcagcatagtttctcagatgcgcatattgctcatctatgccaccatggataagttctaaagccttcttcttag 233  T
Q  191 ccctata 197  Q
    |||||||    
T  234 ccctata 240  T

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Target: scaffold0250 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 97 - 197
Target Start/End: Original strand, 25201 - 25301
Alignment:
Q  97 ggattactcctcatcaattcctcagcataatttctaagatgagaatattgctcatctattccaccatgaatcagttccaaagccttattcttagccctat 196  Q
    ||||| ||||||| ||||||||||||||| ||||| ||||| |||||||||||||||||  ||||||| || ||||| |||||||| |||||||||||||    
T  25201 ggattgctcctcaacaattcctcagcatagtttctcagatgcgaatattgctcatctatggcaccatggataagttctaaagccttcttcttagccctat 25300  T
Q  197 a 197  Q
    |    
T  25301 a 25301  T

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Target: chr2 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 97 - 197
Target Start/End: Complemental strand, 17099220 - 17099120
Alignment:
Q  97 ggattactcctcatcaattcctcagcataatttctaagatgagaatattgctcatctattccaccatgaatcagttccaaagccttattcttagccctat 196  Q
    ||||| ||||||| ||||||||||||||| ||||| ||||| |||||||||||||||||  ||||||| || ||||| |||||||| |||||||||||||    
T  17099220 ggattgctcctcaacaattcctcagcatagtttctcagatgcgaatattgctcatctatggcaccatggataagttctaaagccttcttcttagccctat 17099121  T
Q  197 a 197  Q
    |    
T  17099120 a 17099120  T

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Target: chr1 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 97 - 197
Target Start/End: Original strand, 20590372 - 20590472
Alignment:
Q  97 ggattactcctcatcaattcctcagcataatttctaagatgagaatattgctcatctattccaccatgaatcagttccaaagccttattcttagccctat 196  Q
    ||||| ||||||| ||||||||||||||| ||||| ||||| | ||||||||||||||| |||||||| || ||||| |||||||| |||||||||||||    
T  20590372 ggattgctcctcaacaattcctcagcatagtttctcagatgcgcatattgctcatctatgccaccatggataagttctaaagccttcttcttagccctat 20590471  T
Q  197 a 197  Q
    |    
T  20590472 a 20590472  T

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Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 11332537 - 11332735
Alignment:
Q  1 ttgcaaattccctcttgcatgcattaaagcatacata--tcctttcaaacactggccctgcatctccaactgcacatttaatcctatcagtgctacctgg 98  Q
    |||||||| || ||||||||||||  ||||| |||||  | |||| ||| ||||| ||| |||| || | |||||| |||||| |  |||||||||| |     
T  11332537 ttgcaaatgccatcttgcatgcatagaagcacacatacattctttaaaaaactggtcctccatcacctaatgcacacttaatcttcacagtgctaccaga 11332636  T
Q  99 attactcctcatcaattcctcagcataatttctaagatgagaatattgctcatctattccaccatgaatcagttccaaagccttattcttagccctata 197  Q
    ||| |||||| | ||||||| |||||||| ||| | ||| | |||||||||||||||  ||||||| || || |||||| |||| ||||||||||||||    
T  11332637 attgctcctcctaaattccttagcataatatctcatatgcgcatattgctcatctatggcaccatgtataagctccaaatccttcttcttagccctata 11332735  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 97 - 197
Target Start/End: Complemental strand, 14767173 - 14767073
Alignment:
Q  97 ggattactcctcatcaattcctcagcataatttctaagatgagaatattgctcatctattccaccatgaatcagttccaaagccttattcttagccctat 196  Q
    ||||| ||||||| |||||||| |||||| ||| | | |||   |||||||||||||||  ||||||| || |||||||||||||| ||||||| |||||    
T  14767173 ggattgctcctcaacaattccttagcatagtttttcaaatgcacatattgctcatctatggcaccatggataagttccaaagccttcttcttagtcctat 14767074  T
Q  197 a 197  Q
    |    
T  14767073 a 14767073  T

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Target: scaffold0008 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 111 - 176
Target Start/End: Original strand, 271654 - 271719
Alignment:
Q  111 caattcctcagcataatttctaagatgagaatattgctcatctattccaccatgaatcagttccaa 176  Q
    |||||||||||||||||| |||||||||| |||||||||||||||  |||||||||||| ||||||    
T  271654 caattcctcagcataattcctaagatgagcatattgctcatctatagcaccatgaatcatttccaa 271719  T

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Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 111 - 176
Target Start/End: Complemental strand, 180608 - 180543
Alignment:
Q  111 caattcctcagcataatttctaagatgagaatattgctcatctattccaccatgaatcagttccaa 176  Q
    |||||||||||||||||| |||||||||| |||||||||||||||  |||||||||||| ||||||    
T  180608 caattcctcagcataattcctaagatgagcatattgctcatctatagcaccatgaatcatttccaa 180543  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 111 - 169
Target Start/End: Original strand, 20895060 - 20895118
Alignment:
Q  111 caattcctcagcataatttctaagatgagaatattgctcatctattccaccatgaatca 169  Q
    |||||||||||||||||| |||||||||| |||||||||||||||  ||||||||||||    
T  20895060 caattcctcagcataattcctaagatgagcatattgctcatctatagcaccatgaatca 20895118  T

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