View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11069A_low_262 (Length: 228)
Name: NF11069A_low_262
Description: NF11069A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11069A_low_262 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 20 - 182
Target Start/End: Original strand, 31787605 - 31787773
Alignment:
| Q |
20 |
cacctacaccacctgcattagatataaatgttagttatattagttaattacaaaacatttccctcgtcaacaccgataattatttgaatttcnnnnnnnt |
119 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
31787605 |
cacctacaccacctgcattagatataattattagttatattagttaattacaacacatttccctcgtcaacaccgataattatttgaatttcaaaaaaat |
31787704 |
T |
|
| Q |
120 |
aaagtaacatgtag------cttgtgtgatttgaatttgaaataaaatgacataattaaatgtaatgaa |
182 |
Q |
| |
|
|||||||||||||| | ||| |||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
31787705 |
aaagtaacatgtagcgacgtcctgtctgatttgaatttgaaacaaaatgacataattaaatgtaatgaa |
31787773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 179
Target Start/End: Original strand, 23290594 - 23290626
Alignment:
| Q |
147 |
aatttgaaataaaatgacataattaaatgtaat |
179 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |
|
|
| T |
23290594 |
aatttgaaataaaatgacataattgaatgtaat |
23290626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University