View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11069A_low_264 (Length: 227)

Name: NF11069A_low_264
Description: NF11069A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11069A_low_264
NF11069A_low_264
[»] chr6 (2 HSPs)
chr6 (13-222)||(7519467-7519676)
chr6 (13-207)||(7528838-7529032)
[»] chr4 (1 HSPs)
chr4 (13-207)||(4231810-4232004)
[»] chr1 (12 HSPs)
chr1 (13-207)||(43066423-43066617)
chr1 (13-207)||(3301073-3301267)
chr1 (13-207)||(43045337-43045531)
chr1 (13-207)||(43045790-43045984)
chr1 (13-207)||(43084218-43084412)
chr1 (16-207)||(45983463-45983654)
chr1 (13-207)||(45993240-45993434)
chr1 (13-188)||(7890792-7890967)
chr1 (12-207)||(38137607-38137802)
chr1 (13-179)||(40034448-40034612)
chr1 (32-181)||(7888546-7888695)
chr1 (12-181)||(51291985-51292153)
[»] chr2 (4 HSPs)
chr2 (13-207)||(34691170-34691362)
chr2 (13-207)||(34713582-34713774)
chr2 (13-157)||(16232567-16232711)
chr2 (45-82)||(33861304-33861341)
[»] chr8 (3 HSPs)
chr8 (13-207)||(4620033-4620227)
chr8 (13-181)||(1846761-1846929)
chr8 (30-157)||(4787275-4787402)
[»] chr5 (1 HSPs)
chr5 (33-207)||(16349482-16349656)


Alignment Details
Target: chr6 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 13 - 222
Target Start/End: Original strand, 7519467 - 7519676
Alignment:
Q  13 ctgagatgaacaagaggtcattcaagtacgcatgggttcttgacaagcttaaggctgagcgtgaaagaggaattaccattgatattgcattgtggaaatt 112  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  7519467 ctgagatgaacaagaggtctttcaagtacgcatgggttcttgacaagcttaaggctgagcgtgaaagaggaattaccattgatattgctttgtggaaatt 7519566  T
Q  113 tgagaccaccaagtactactgcacagtcattgatgctcctggacatcgtgatttcatcaagaacatgattactggaacctcccaggctgattgtgatgtc 212  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  7519567 tgagaccaccaagtactactgcacagtcattgatgctcccggacatcgtgatttcatcaagaacatgattactggaacctcccaggctgattgtgctgtc 7519666  T
Q  213 catctcattg 222  Q
    | | ||||||    
T  7519667 cttatcattg 7519676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 13 - 207
Target Start/End: Original strand, 7528838 - 7529032
Alignment:
Q  13 ctgagatgaacaagaggtcattcaagtacgcatgggttcttgacaagcttaaggctgagcgtgaaagaggaattaccattgatattgcattgtggaaatt 112  Q
    |||||||||||||| | ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||    
T  7528838 ctgagatgaacaagcgttcattcaagtatgcatgggttcttgacaaacttaaggctgagcgtgaaagaggaattaccatcgatattgccttgtggaaatt 7528937  T
Q  113 tgagaccaccaagtactactgcacagtcattgatgctcctggacatcgtgatttcatcaagaacatgattactggaacctcccaggctgattgtg 207  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7528938 tgagaccaccaagtactactgcacagtcattgatgctcccggacatcgtgatttcatcaagaacatgattactggaacctcccaggctgattgtg 7529032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 13 - 207
Target Start/End: Complemental strand, 4232004 - 4231810
Alignment:
Q  13 ctgagatgaacaagaggtcattcaagtacgcatgggttcttgacaagcttaaggctgagcgtgaaagaggaattaccattgatattgcattgtggaaatt 112  Q
    |||||||||||||| | ||||| ||||| || ||||||||||||||||| |||||||||||||||||||| || || ||||| |||||  ||||||| ||    
T  4232004 ctgagatgaacaagcgttcatttaagtatgcttgggttcttgacaagctcaaggctgagcgtgaaagaggtatcacaattgacattgctctgtggaagtt 4231905  T
Q  113 tgagaccaccaagtactactgcacagtcattgatgctcctggacatcgtgatttcatcaagaacatgattactggaacctcccaggctgattgtg 207  Q
    ||||||||| |||||||||||||| ||||||||||| ||||||||  | |||||||| ||||||||||||||||| || ||||| ||||||||||    
T  4231904 tgagaccactaagtactactgcactgtcattgatgcccctggacacagggatttcattaagaacatgattactggtacatcccaagctgattgtg 4231810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 91; Significance: 3e-44; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 13 - 207
Target Start/End: Original strand, 43066423 - 43066617
Alignment:
Q  13 ctgagatgaacaagaggtcattcaagtacgcatgggttcttgacaagcttaaggctgagcgtgaaagaggaattaccattgatattgcattgtggaaatt 112  Q
    |||||||||||||| | ||||||||||| || ||||||||||||||||| |||||||| ||||||||||| || |||||||| |||||  | ||||| ||    
T  43066423 ctgagatgaacaagcgttcattcaagtatgcctgggttcttgacaagctcaaggctgaacgtgaaagaggtatcaccattgacattgctctctggaagtt 43066522  T
Q  113 tgagaccaccaagtactactgcacagtcattgatgctcctggacatcgtgatttcatcaagaacatgattactggaacctcccaggctgattgtg 207  Q
    |||||| ||||||||||||||||| ||||| ||||| || |||||  | |||||||| ||||||||||| || ||||| ||||| ||||||||||    
T  43066523 tgagacaaccaagtactactgcactgtcatcgatgcccccggacacagggatttcattaagaacatgatcaccggaacatcccaagctgattgtg 43066617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 13 - 207
Target Start/End: Complemental strand, 3301267 - 3301073
Alignment:
Q  13 ctgagatgaacaagaggtcattcaagtacgcatgggttcttgacaagcttaaggctgagcgtgaaagaggaattaccattgatattgcattgtggaaatt 112  Q
    |||||||||||||| | ||||||||||| || ||||| || |||||||| ||||||||  |||||||||| || || ||||| |||||  ||||||| ||    
T  3301267 ctgagatgaacaagcgttcattcaagtatgcttgggtgctcgacaagctcaaggctgaatgtgaaagaggtatcacaattgacattgctctgtggaagtt 3301168  T
Q  113 tgagaccaccaagtactactgcacagtcattgatgctcctggacatcgtgatttcatcaagaacatgattactggaacctcccaggctgattgtg 207  Q
    |||||| || |||||||||||||| ||||||||||| || |||||  | |||||||| |||||||||||||||||||| ||||| ||||||||||    
T  3301167 tgagactactaagtactactgcactgtcattgatgcccccggacacagggatttcattaagaacatgattactggaacatcccaagctgattgtg 3301073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 13 - 207
Target Start/End: Complemental strand, 43045531 - 43045337
Alignment:
Q  13 ctgagatgaacaagaggtcattcaagtacgcatgggttcttgacaagcttaaggctgagcgtgaaagaggaattaccattgatattgcattgtggaaatt 112  Q
    |||||||||||||| | ||||||||||| || ||||| ||||||||||| |||||||| ||||||||||| || |||||||| |||||  | ||||| ||    
T  43045531 ctgagatgaacaagcgttcattcaagtatgcctgggtccttgacaagctcaaggctgaacgtgaaagaggtatcaccattgacattgctctctggaagtt 43045432  T
Q  113 tgagaccaccaagtactactgcacagtcattgatgctcctggacatcgtgatttcatcaagaacatgattactggaacctcccaggctgattgtg 207  Q
    |||||| ||||||||||||||||| ||||| ||||| || |||||  | |||||||| ||||||||||| || ||||| ||||| ||||||||||    
T  43045431 tgagacaaccaagtactactgcactgtcatcgatgcccccggacacagggatttcattaagaacatgatcaccggaacatcccaagctgattgtg 43045337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 13 - 207
Target Start/End: Complemental strand, 43045984 - 43045790
Alignment:
Q  13 ctgagatgaacaagaggtcattcaagtacgcatgggttcttgacaagcttaaggctgagcgtgaaagaggaattaccattgatattgcattgtggaaatt 112  Q
    |||||||||||||| | ||||||||||| || ||||| ||||||||||| |||||||| ||||||||||| || |||||||| |||||  | ||||| ||    
T  43045984 ctgagatgaacaagcgttcattcaagtatgcctgggtccttgacaagctcaaggctgaacgtgaaagaggtatcaccattgacattgctctctggaagtt 43045885  T
Q  113 tgagaccaccaagtactactgcacagtcattgatgctcctggacatcgtgatttcatcaagaacatgattactggaacctcccaggctgattgtg 207  Q
    |||||| ||||||||||||||||| ||||| ||||| || |||||  | |||||||| ||||||||||| || ||||| ||||| ||||||||||    
T  43045884 tgagacaaccaagtactactgcactgtcatcgatgcccccggacacagggatttcattaagaacatgatcaccggaacatcccaagctgattgtg 43045790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 13 - 207
Target Start/End: Complemental strand, 43084412 - 43084218
Alignment:
Q  13 ctgagatgaacaagaggtcattcaagtacgcatgggttcttgacaagcttaaggctgagcgtgaaagaggaattaccattgatattgcattgtggaaatt 112  Q
    |||||||||||||| | ||||||||||| || ||||| ||||||||||| |||||||| ||||||||||| || |||||||| |||||  | ||||| ||    
T  43084412 ctgagatgaacaagcgttcattcaagtatgcctgggtccttgacaagctcaaggctgaacgtgaaagaggtatcaccattgacattgctctctggaagtt 43084313  T
Q  113 tgagaccaccaagtactactgcacagtcattgatgctcctggacatcgtgatttcatcaagaacatgattactggaacctcccaggctgattgtg 207  Q
    |||||| ||||||||||||||||| ||||| ||||| || |||||  | |||||||| ||||||||||| || ||||| ||||| ||||||||||    
T  43084312 tgagacaaccaagtactactgcactgtcatcgatgcccccggacacagggatttcattaagaacatgatcaccggaacatcccaagctgattgtg 43084218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 16 - 207
Target Start/End: Original strand, 45983463 - 45983654
Alignment:
Q  16 agatgaacaagaggtcattcaagtacgcatgggttcttgacaagcttaaggctgagcgtgaaagaggaattaccattgatattgcattgtggaaatttga 115  Q
    ||||||||||| | ||||||||||| || ||||| ||||||||||| |||||||| |||||||||||  |||| ||||| ||| |  ||| ||| |||||    
T  45983463 agatgaacaagcgttcattcaagtatgcttgggtgcttgacaagctcaaggctgaacgtgaaagaggtgttacaattgacattaccctgtcgaagtttga 45983562  T
Q  116 gaccaccaagtactactgcacagtcattgatgctcctggacatcgtgatttcatcaagaacatgattactggaacctcccaggctgattgtg 207  Q
    ||| | ||||||| ||||||| ||||||||||| || |||||  | |||||||| ||||||||||| || ||||| ||||| ||||| ||||    
T  45983563 gacaaacaagtacaactgcactgtcattgatgcccccggacacagggatttcattaagaacatgatcaccggaacgtcccaagctgactgtg 45983654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 13 - 207
Target Start/End: Original strand, 45993240 - 45993434
Alignment:
Q  13 ctgagatgaacaagaggtcattcaagtacgcatgggttcttgacaagcttaaggctgagcgtgaaagaggaattaccattgatattgcattgtggaaatt 112  Q
    ||||||||| |||| | ||||||||||| || ||||| ||||||||||| ||| |||||||||||||||| || || ||||| | | | |||| ||| ||    
T  45993240 ctgagatgatcaagcgttcattcaagtatgcttgggtgcttgacaagctcaagactgagcgtgaaagaggtatcacaattgacagttctttgtcgaagtt 45993339  T
Q  113 tgagaccaccaagtactactgcacagtcattgatgctcctggacatcgtgatttcatcaagaacatgattactggaacctcccaggctgattgtg 207  Q
    |||||| | |||||||  |||||| |||||||||||  | |||||  | |||||||| ||||||||||| || || || ||||| ||||||||||    
T  45993340 tgagacaaacaagtacagctgcactgtcattgatgcctccggacacagggatttcattaagaacatgatcaccgggacgtcccaagctgattgtg 45993434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 13 - 188
Target Start/End: Original strand, 7890792 - 7890967
Alignment:
Q  13 ctgagatgaacaagaggtcattcaagtacgcatgggttcttgacaagcttaaggctgagcgtgaaagaggaattaccattgatattgcattgtggaaatt 112  Q
    |||||||||||| |   ||||||||||| || ||||| ||||||||||| ||||| |||||||||||||| || || ||||| ||| |  ||||||| ||    
T  7890792 ctgagatgaacaggcattcattcaagtatgcttgggtgcttgacaagctcaaggccgagcgtgaaagaggtatcacaattgacatttctctgtggaagtt 7890891  T
Q  113 tgagaccaccaagtactactgcacagtcattgatgctcctggacatcgtgatttcatcaagaacatgattactgga 188  Q
    |||||| ||||| | |  ||||||  |||||||||| ||||||||  | |||||||| ||||||||||| ||||||    
T  7890892 tgagacaaccaacttccgctgcactctcattgatgcccctggacacagggatttcattaagaacatgatcactgga 7890967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 12 - 207
Target Start/End: Original strand, 38137607 - 38137802
Alignment:
Q  12 actgagatgaacaagaggtcattcaagtacgcatgggttcttgacaagcttaaggctgagcgtgaaagaggaattaccattgatattgcattgtggaaat 111  Q
    |||||||| ||||||   || |||||||| || ||||| || |||||||| ||||| |||||||||||||| || || ||||| ||| |  |||  || |    
T  38137607 actgagataaacaagccatcgttcaagtatgcttgggtgctcgacaagctcaaggccgagcgtgaaagaggtatcactattgacatttctctgtcaaagt 38137706  T
Q  112 ttgagaccaccaagtactactgcacagtcattgatgctcctggacatcgtgatttcatcaagaacatgattactggaacctcccaggctgattgtg 207  Q
    ||||||| |||||||||||||||||  |||||||||| || |||||  | |||||||| |||||||||||||| || || ||||| ||||| ||||    
T  38137707 ttgagactaccaagtactactgcactctcattgatgcccccggacacagggatttcattaagaacatgattaccgggacgtcccaagctgactgtg 38137802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 13 - 179
Target Start/End: Original strand, 40034448 - 40034612
Alignment:
Q  13 ctgagatgaacaagaggtcattcaagtacgcatgggttcttgacaagcttaaggctgagcgtgaaagaggaattaccattgatattgcattgtggaaatt 112  Q
    |||||||||||||| | ||||||||||| || ||||| ||||||||||| ||||||||||||||||||||  |||| ||||||||| |  |||  || ||    
T  40034448 ctgagatgaacaagcgctcattcaagtatgcttgggtacttgacaagctcaaggctgagcgtgaaagaggtgttacaattgatatttccatgtccaagtt 40034547  T
Q  113 tgagaccaccaagtactactgcacagtcattgatgctcctggacatcgtgatttcatcaagaacatg 179  Q
    |||||| ||||| ||| |||||||  ||||||| || || |||||    ||||||||||||||||||    
T  40034548 tgagacaaccaaataccactgcactctcattgacgcccccggaca--cagatttcatcaagaacatg 40034612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 32 - 181
Target Start/End: Original strand, 7888546 - 7888695
Alignment:
Q  32 attcaagtacgcatgggttcttgacaagcttaaggctgagcgtgaaagaggaattaccattgatattgcattgtggaaatttgagaccaccaagtactac 131  Q
    ||||||||| || ||||| |||||||| || |||||||||||||||||||| || || ||||| ||| |  | ||||| ||| |||| ||||  |||| |    
T  7888546 attcaagtatgcttgggtgcttgacaaactcaaggctgagcgtgaaagaggtatcacaattgacatttctctttggaagtttcagacaaccagctactgc 7888645  T
Q  132 tgcacagtcattgatgctcctggacatcgtgatttcatcaagaacatgat 181  Q
    |||||  |||||||||| || |||||  | ||||||||||||||||||||    
T  7888646 tgcactctcattgatgcccccggacacagggatttcatcaagaacatgat 7888695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 181
Target Start/End: Complemental strand, 51292153 - 51291985
Alignment:
Q  12 actgagatgaacaagaggtcattcaagtacgcatgggttcttgacaagcttaaggctgagcgtgaaagaggaattaccattgatattgcattgtggaaat 111  Q
    ||||||||||||| | | ||||||| ||| || ||||| ||||||||| | |||||||||||||||||||| || || ||||| ||| |  | |  || |    
T  51292153 actgagatgaacatgcgttcattcacgtatgcttgggtgcttgacaagttcaaggctgagcgtgaaagaggtatcacaattgacatttctctatccaagt 51292054  T
Q  112 ttgagaccaccaagtactactgcacagtcattgatgctcctggacatcgtgatttcatcaagaacatgat 181  Q
    |||| || | ||||||||| |||||  |||||||||| || |||||| |  ||||||| |||||||||||    
T  51292053 ttga-acaatcaagtactattgcactctcattgatgcccccggacatgggaatttcattaagaacatgat 51291985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 13 - 207
Target Start/End: Complemental strand, 34691362 - 34691170
Alignment:
Q  13 ctgagatgaacaagaggtcattcaagtacgcatgggttcttgacaagcttaaggctgagcgtgaaagaggaattaccattgatattgcattgtggaaatt 112  Q
    |||||||||| ||| | ||||||||||| || ||||| ||||||||||| || ||||||||||||||||| || || ||||| ||| |  | || || ||    
T  34691362 ctgagatgaagaagcgttcattcaagtatgcttgggtgcttgacaagctcaacgctgagcgtgaaagaggtatcacaattgacatttc--tatgcaagtt 34691265  T
Q  113 tgagaccaccaagtactactgcacagtcattgatgctcctggacatcgtgatttcatcaagaacatgattactggaacctcccaggctgattgtg 207  Q
    |||||| |||||||||| || |||  ||||||||||||| |||||  | |||||||| ||||||||||| || || |||||||| ||||| ||||    
T  34691264 tgagacaaccaagtactgcttcactctcattgatgctcccggacacagggatttcattaagaacatgatcaccgggacctcccaagctgactgtg 34691170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 13 - 207
Target Start/End: Complemental strand, 34713774 - 34713582
Alignment:
Q  13 ctgagatgaacaagaggtcattcaagtacgcatgggttcttgacaagcttaaggctgagcgtgaaagaggaattaccattgatattgcattgtggaaatt 112  Q
    |||||||||| ||| | ||||||||||| || ||||| ||||||||||| || ||||||||||||||||| || || ||||| ||| |  | || || ||    
T  34713774 ctgagatgaagaagcgttcattcaagtatgcttgggtgcttgacaagctcaacgctgagcgtgaaagaggtatcacaattgacatttc--tatgcaagtt 34713677  T
Q  113 tgagaccaccaagtactactgcacagtcattgatgctcctggacatcgtgatttcatcaagaacatgattactggaacctcccaggctgattgtg 207  Q
    |||||| |||||||||| || |||  ||||||||||||| |||||  | |||||||| ||||||||||| || || |||||||| ||||| ||||    
T  34713676 tgagacaaccaagtactgcttcactctcattgatgctcccggacacagggatttcattaagaacatgatcaccgggacctcccaagctgactgtg 34713582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 13 - 157
Target Start/End: Complemental strand, 16232711 - 16232567
Alignment:
Q  13 ctgagatgaacaagaggtcattcaagtacgcatgggttcttgacaagcttaaggctgagcgtgaaagaggaattaccattgatattgcattgtggaaatt 112  Q
    |||||||||| | | | ||||||||||| || ||||| ||||||||||| |||||||||||||||||||| || || ||||| ||| |  |||| || ||    
T  16232711 ctgagatgaagatgcgttcattcaagtatgcttgggtgcttgacaagctcaaggctgagcgtgaaagaggtatcacaattgacatttccatgtgcaagtt 16232612  T
Q  113 tgagaccaccaagtactactgcacagtcattgatgctcctggaca 157  Q
    |||||| ||||||||||  |||||  |||||||||| || |||||    
T  16232611 tgagacaaccaagtactgttgcaccctcattgatgcccccggaca 16232567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 82
Target Start/End: Complemental strand, 33861341 - 33861304
Alignment:
Q  45 tgggttcttgacaagcttaaggctgagcgtgaaagagg 82  Q
    |||||||||||||||||  |||||||||||||||||||    
T  33861341 tgggttcttgacaagctcgaggctgagcgtgaaagagg 33861304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 13 - 207
Target Start/End: Complemental strand, 4620227 - 4620033
Alignment:
Q  13 ctgagatgaacaagaggtcattcaagtacgcatgggttcttgacaagcttaaggctgagcgtgaaagaggaattaccattgatattgcattgtggaaatt 112  Q
    ||||||| |||| | | |||||||| || || ||||| ||||||||||| |||||||||||||||||||| || || || || ||| |  |||  || ||    
T  4620227 ctgagataaacatgtgttcattcaaatatgcttgggtgcttgacaagctcaaggctgagcgtgaaagaggtatcacaatcgacatttctctgtccaagtt 4620128  T
Q  113 tgagaccaccaagtactactgcacagtcattgatgctcctggacatcgtgatttcatcaagaacatgattactggaacctcccaggctgattgtg 207  Q
    |||||| |||||||||||||||||  |||||||||| || |||||  | |||||||| ||||||||||| || ||||| ||||| ||||| ||||    
T  4620127 tgagacaaccaagtactactgcactctcattgatgcccccggacacagagatttcattaagaacatgatcaccggaacatcccaagctgactgtg 4620033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 13 - 181
Target Start/End: Complemental strand, 1846929 - 1846761
Alignment:
Q  13 ctgagatgaacaagaggtcattcaagtacgcatgggttcttgacaagcttaaggctgagcgtgaaagaggaattaccattgatattgcattgtggaaatt 112  Q
    ||||||| |||| | | ||||||||||| || ||||| ||||||||||| ||||| |||||||||||||| || || ||||| ||| |  | ||||| ||    
T  1846929 ctgagataaacaggcgttcattcaagtatgcttgggtgcttgacaagctcaaggccgagcgtgaaagaggtatcacaattgacatttctctatggaagtt 1846830  T
Q  113 tgagaccaccaagtactactgcacagtcattgatgctcctggacatcgtgatttcatcaagaacatgat 181  Q
    |||||| ||||| | |  ||||||  |||||||||| || |||||  | |||||||| |||||||||||    
T  1846829 tgagacaaccaacttcctctgcactctcattgatgcccccggacacagggatttcattaagaacatgat 1846761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 157
Target Start/End: Original strand, 4787275 - 4787402
Alignment:
Q  30 tcattcaagtacgcatgggttcttgacaagcttaaggctgagcgtgaaagaggaattaccattgatattgcattgtggaaatttgagaccaccaagtact 129  Q
    ||||||||||| || ||||| |||||||| || |||| |||||||||||||||    || ||||| ||| |  |||  || |||||||| | |||||||     
T  4787275 tcattcaagtatgcttgggtgcttgacaaactcaagggtgagcgtgaaagaggtgccacaattgacatttctatgtccaagtttgagacaaacaagtaca 4787374  T
Q  130 actgcacagtcattgatgctcctggaca 157  Q
    ||||||| |||||||||||||| |||||    
T  4787375 actgcactgtcattgatgctcccggaca 4787402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 33 - 207
Target Start/End: Complemental strand, 16349656 - 16349482
Alignment:
Q  33 ttcaagtacgcatgggttcttgacaagcttaaggctgagcgtgaaagaggaattaccattgatattgcattgtggaaatttgagaccaccaagtactact 132  Q
    |||||||| || |||||||||||||| || ||||||||||| |||||||| || || ||||| | | |  ||| ||| |||||||| |||||||||  ||    
T  16349656 ttcaagtatgcgtgggttcttgacaaactcaaggctgagcgcgaaagaggtatcacaattgacaattctatgttgaattttgagacaaccaagtaccgct 16349557  T
Q  133 gcacagtcattgatgctcctggacatcgtgatttcatcaagaacatgattactggaacctcccaggctgattgtg 207  Q
    ||||  |||||||||| || |||||  | |||||||| ||||||||||||||||| || ||||| ||||||||||    
T  16349556 gcactatcattgatgcccccggacacagggatttcattaagaacatgattactgggacatcccaagctgattgtg 16349482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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