View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11069A_low_269 (Length: 225)
Name: NF11069A_low_269
Description: NF11069A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11069A_low_269 |
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| [»] chr3 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 5 - 225
Target Start/End: Complemental strand, 20816837 - 20816617
Alignment:
| Q |
5 |
caagtaattcaacacttccaaagcgcgcattaaggtttctggtgcaggagggtccataaagtcaaaatgcactaaatcgtctatacccaatttcttcaaa |
104 |
Q |
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| T |
20816837 |
caagtaattcaacacttccaaagcgcgcattaaggtttctggtgcaggagggtccataaagtcaaaatgtactaaatcgtctatacccaatttcttcaaa |
20816738 |
T |
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| Q |
105 |
gtaagaactgtgttggcgagattagatctcaaaatttcaggataggtctgcggctgaagatcattattgaaacttctttccgtatgaagtctaaagcatt |
204 |
Q |
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| T |
20816737 |
gtaagaactgtgttggcgagattagatctcaaaatttcaggataggtctgcggctgaagatcattattgaaacttctttccgtataaagtctaaagcatt |
20816638 |
T |
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| Q |
205 |
tccctggttgtgttcttccag |
225 |
Q |
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| T |
20816637 |
tccctggttgtgttcttccag |
20816617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 5 - 225
Target Start/End: Original strand, 38779308 - 38779528
Alignment:
| Q |
5 |
caagtaattcaacacttccaaagcgcgcattaaggtttctggtgcaggagggtccataaagtcaaaatgcactaaatcgtctatacccaatttcttcaaa |
104 |
Q |
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| T |
38779308 |
caagtaattcaacacttccaaagcacgcatcaaggtttcaggggcaggagggtccatgaagtcaaaatgaactaaatcatctatacccagtttcttcaat |
38779407 |
T |
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| Q |
105 |
gtaagaactgtgttggcgagattagatctcaaaatttcaggataggtctgcggctgaagatcattattgaaacttctttccgtatgaagtctaaagcatt |
204 |
Q |
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| T |
38779408 |
gtaagaactgtgttggcaagattagatctcaaaatttcaggataggtctgcggctgaagatcattattgaaacttctttcggtataaagtctaaagcatt |
38779507 |
T |
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| Q |
205 |
tccctggttgtgttcttccag |
225 |
Q |
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| T |
38779508 |
tccccggctgagttcttccag |
38779528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 6 - 223
Target Start/End: Original strand, 33388268 - 33388485
Alignment:
| Q |
6 |
aagtaattcaacacttccaaagcgcgcattaaggtttctggtgcaggagggtccataaagtcaaaatgcactaaatcgtctatacccaatttcttcaaag |
105 |
Q |
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| T |
33388268 |
aagtaattcaacacttccaaagcacgcattaaggtttcaggagcaggagggtccatgaagtcaaaatgaactaaatcatctatacccaatttcttcaatg |
33388367 |
T |
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| Q |
106 |
taagaactgtgttggcgagattagatctcaaaatttcaggataggtctgcggctgaagatcattattgaaacttctttccgtatgaagtctaaagcattt |
205 |
Q |
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| T |
33388368 |
taagaaccgtgtttgcaagattagatctcaaaatttcaggataggtctgcggctgaagatcattactgaaacttatttcggtatagagtctatagcattt |
33388467 |
T |
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| Q |
206 |
ccctggttgtgttcttcc |
223 |
Q |
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||| ||||| |||||||| |
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| T |
33388468 |
ccccggttgagttcttcc |
33388485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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