View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11069A_low_27 (Length: 408)
Name: NF11069A_low_27
Description: NF11069A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11069A_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 59 - 402
Target Start/End: Original strand, 12751401 - 12751750
Alignment:
| Q |
59 |
tagagaatacatgatgtgaatctaagataaggttcaagaacaaagatcttttcatgattcaattcaatttttccaaacaatttttctcaagaactaacct |
158 |
Q |
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| T |
12751401 |
tagagaatacatgatgtgaatctaagataaggttcaagaacaaagatcttttcatgattcaattcagtttttccaaacaatttttctcaagaactaacct |
12751500 |
T |
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| Q |
159 |
aaaaaacacaaataaggattagagtacgatttattaatacatgcaatctttctacttgagcatgaactcgtgaaaagagattcgggtacagtgagt---- |
254 |
Q |
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| T |
12751501 |
aaaaaacacaaataaggattagagtacgatttattaatacatgcaatctttctacttgagcatgaactcgtgaaaagagattcgggtacagtgagttaac |
12751600 |
T |
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| Q |
255 |
-taacatgctcgaagaaagattgtgaacgtttagttgaaccataaaaaacaagaaacttaactttctatagtgtacaatttg-nnnnnnnattatattgt |
352 |
Q |
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| T |
12751601 |
ataacatgctcgaagaaagattgtgaacgtttagttgaaccataaaaaacaagaaacttaactttctatagtgtaccatttgttttttttattatattgt |
12751700 |
T |
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| Q |
353 |
tttagaatcacaaaacattttatatctagagacatatttgtcctcatcca |
402 |
Q |
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| T |
12751701 |
tttagaatcacaaaacattttatatctagagacatatttgtcctcatcca |
12751750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 12751345 - 12751387
Alignment:
| Q |
19 |
acatcactcgtaaagctggattgcacggtgcatcaccttgtag |
61 |
Q |
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| T |
12751345 |
acattactcgtaaagctggattgcatggtgcatcaccttgtag |
12751387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 87 - 163
Target Start/End: Original strand, 26405095 - 26405172
Alignment:
| Q |
87 |
aaggttcaagaacaaagatcttttc-atgattcaattcaatttttccaaacaatttttctcaagaactaacctaaaaa |
163 |
Q |
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| T |
26405095 |
aaggttcaagaataaaaatcttttccatgattcaattcaacttttccaacttttttatttcaagaactaacctaaaaa |
26405172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 70 - 124
Target Start/End: Original strand, 8855887 - 8855943
Alignment:
| Q |
70 |
tgatgtgaatctaagat-aaggttcaagaacaaagatctttt-catgattcaattca |
124 |
Q |
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| T |
8855887 |
tgatgtgaacctaagatgaaggttcaagaacaaggatcttttccatgattcagttca |
8855943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 144
Target Start/End: Complemental strand, 20755312 - 20755280
Alignment:
| Q |
112 |
atgattcaattcaatttttccaaacaatttttc |
144 |
Q |
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| T |
20755312 |
atgattcaatttaatttttccaaacaatttttc |
20755280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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