View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11069A_low_272 (Length: 224)

Name: NF11069A_low_272
Description: NF11069A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11069A_low_272
NF11069A_low_272
[»] chr1 (16 HSPs)
chr1 (1-218)||(13244711-13244928)
chr1 (1-112)||(13271477-13271588)
chr1 (9-199)||(13085911-13086101)
chr1 (1-112)||(12964065-12964176)
chr1 (1-124)||(30368298-30368421)
chr1 (1-192)||(13100812-13101002)
chr1 (9-199)||(13081063-13081253)
chr1 (1-124)||(13070366-13070489)
chr1 (1-124)||(13094278-13094401)
chr1 (1-194)||(13007009-13007202)
chr1 (1-124)||(13129707-13129830)
chr1 (9-112)||(19279366-19279469)
chr1 (1-194)||(13204268-13204461)
chr1 (4-124)||(13161400-13161520)
chr1 (1-198)||(13065403-13065600)
chr1 (56-112)||(13010664-13010720)


Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 13244711 - 13244928
Alignment:
Q  1 tagctttcaatgcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcataca 100  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13244711 tagctttcaatgcaggtcctagaagttgtattgggaaagatcttagcttcgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcataca 13244810  T
Q  101 ggtggtggaaggccaccctgtaacgctgagaaattctattgcccttcgcatgaaacacggcttaaaggtcgaaatcagtaaaagatgcatttgatataac 200  Q
    |||||||||||| ||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  13244811 ggtggtggaaggtcaccctgtaacgctgagaacttctattgtcgttcgcatgaaacacggcttaaaggtcgaagtcagtaaaagatgcatttgatataac 13244910  T
Q  201 aaagttgcaagtgtgatg 218  Q
    ||||||| ||||||||||    
T  13244911 aaagttgtaagtgtgatg 13244928  T

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Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 13271588 - 13271477
Alignment:
Q  1 tagctttcaatgcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcataca 100  Q
    |||| |||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||| ||||||    
T  13271588 tagcattcaatgcaggtcctagaagctgtcttgggaaagatattagctttattcaaatgaaaatggttgcagcttctgtattatggaagtttcacataca 13271489  T
Q  101 ggtggtggaagg 112  Q
     |||||||||||    
T  13271488 tgtggtggaagg 13271477  T

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Target: chr1; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 9 - 199
Target Start/End: Complemental strand, 13086101 - 13085911
Alignment:
Q  9 aatgcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtgg 108  Q
    |||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||| |||||| || ||||    
T  13086101 aatgcaggtcctcgaagttgtcttgggaaagatattagcattgttcaaatgaaaatggttgcagctgctatgttatggaagtttcacatacaagttgtgg 13086002  T
Q  109 aaggccaccctgtaacgctgagaaattctattgcccttcgcatgaaacacggcttaaaggtcgaaatcagtaaaagatgcatttgatataa 199  Q
    |||| ||  ||||||| |  |||  ||||||||  || |||||| |||| || || || ||| || | ||||||||||| |||||||||||    
T  13086001 aaggtcattctgtaactccaagagtttctattgttctccgcatggaacatggattcaaagtcaaagttagtaaaagatgaatttgatataa 13085911  T

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Target: chr1; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 12964065 - 12964176
Alignment:
Q  1 tagctttcaatgcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcataca 100  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  | |||| |||||||||| |||| |    
T  12964065 tagcattcaatgcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgctgctaatgtgttgtggaagtttcacataga 12964164  T
Q  101 ggtggtggaagg 112  Q
     |||||||||||    
T  12964165 agtggtggaagg 12964176  T

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Target: chr1; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 30368298 - 30368421
Alignment:
Q  1 tagctttcaatgcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcataca 100  Q
    ||||||||||| |||| |||||||||||||| || |||||| |||| || ||||||||||| |||||||||||| | |||||||||||||||| ||||||    
T  30368298 tagctttcaatacaggacctagaagttgtatgggtaaagatcttagtttcgttcaaatgaagatggttgcagctgccttgttatggaagtttcacataca 30368397  T
Q  101 ggtggtggaaggccaccctgtaac 124  Q
    ||| |||||||| |||||||||||    
T  30368398 ggtcgtggaaggtcaccctgtaac 30368421  T

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Target: chr1; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 13101002 - 13100812
Alignment:
Q  1 tagctttcaatgcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcataca 100  Q
    ||||||||||| |||| |||||||||||||| || || |||||||||||  |||||||||| ||||| |||||| ||||||||  |||||||| ||||||    
T  13101002 tagctttcaat-caggacctagaagttgtatgggtaaggatattagcttcattcaaatgaagatggtcgcagctgctttgttaccgaagtttcacataca 13100904  T
Q  101 ggtggtggaaggccaccctgtaacgctgagaaattctattgcccttcgcatgaaacacggcttaaaggtcgaaatcagtaaaagatgcattt 192  Q
    |||||||||||| |||||| |||| | ||    |||| |||  |||| ||||||||| ||||| |||||| || ||| ||||||||||||||    
T  13100903 ggtggtggaaggtcaccctataaccccgaagctttcttttgttcttcacatgaaacatggcttgaaggtcaaagtcactaaaagatgcattt 13100812  T

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Target: chr1; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 9 - 199
Target Start/End: Original strand, 13081063 - 13081253
Alignment:
Q  9 aatgcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtgg 108  Q
    ||||||||||| ||||| ||| |||||||||||||||| ||| ||||||||||||||||||||||| |  | ||||  ||||||| ||| ||||||||||    
T  13081063 aatgcaggtccaagaagctgtcttgggaaagatattagttttcttcaaatgaaaatggttgcagctgcagttttatttaagtttcacattcaggtggtgg 13081162  T
Q  109 aaggccaccctgtaacgctgagaaattctattgcccttcgcatgaaacacggcttaaaggtcgaaatcagtaaaagatgcatttgatataa 199  Q
    |||| ||| |  |||  |  ||   |||||||  |||||||||| |||| ||||| |||||| ||||  ||||||||||||||||||||||    
T  13081163 aaggtcactcaataattcctagggtttctattctccttcgcatggaacatggctttaaggtcaaaattcgtaaaagatgcatttgatataa 13081253  T

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Target: chr1; HSP #8
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 13070366 - 13070489
Alignment:
Q  1 tagctttcaatgcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcataca 100  Q
    ||||||||||| ||||||| ||||||||| | || |||||| |||| ||  |||||||||| ||||| |||||| ||||||||  |||||||| ||||||    
T  13070366 tagctttcaatacaggtccgagaagttgtttgggtaaagatcttagtttcattcaaatgaagatggtcgcagctgctttgttacagaagtttcacataca 13070465  T
Q  101 ggtggtggaaggccaccctgtaac 124  Q
    |||||||||||| |||||||||||    
T  13070466 ggtggtggaaggtcaccctgtaac 13070489  T

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Target: chr1; HSP #9
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 13094401 - 13094278
Alignment:
Q  1 tagctttcaatgcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcataca 100  Q
    ||||||||||  |||| || |||| |||||| || ||||||||||| ||  |||||||||| ||||| |||||| |||||||| ||||||||| ||||||    
T  13094401 tagctttcaacacaggacccagaatttgtataggtaaagatattagtttcattcaaatgaagatggtcgcagctgctttgttacggaagtttcacataca 13094302  T
Q  101 ggtggtggaaggccaccctgtaac 124  Q
    |||||||||||| |||||||||||    
T  13094301 ggtggtggaaggtcaccctgtaac 13094278  T

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Target: chr1; HSP #10
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 13007202 - 13007009
Alignment:
Q  1 tagctttcaatgcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcataca 100  Q
    ||||||||||| ||||||||||||||||||| || || |||||||||||  |||||||||| ||||| |||||  ||||||||   ||||||| |||| |    
T  13007202 tagctttcaatacaggtcctagaagttgtatgggcaaggatattagcttcattcaaatgaagatggtcgcagcagctttgttaccaaagtttcacataaa 13007103  T
Q  101 ggtggtggaaggccaccctgtaacgctgagaaattctattgcccttcgcatgaaacacggcttaaaggtcgaaatcagtaaaagatgcatttga 194  Q
    |||||||| ||| |||||| |||| | ||    |||| |||  |||| ||||||||| ||||| |||||  || ||| ||||||||||||||||    
T  13007102 ggtggtggcaggtcaccctataaccccgaagctttcttttgttcttcacatgaaacatggcttgaaggttaaagtcactaaaagatgcatttga 13007009  T

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Target: chr1; HSP #11
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 13129830 - 13129707
Alignment:
Q  1 tagctttcaatgcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcataca 100  Q
    ||||||||||  |||| || |||| |||||| || |||||| |||| ||  |||||||||| ||||| |||||| ||||||||  |||||||| ||||||    
T  13129830 tagctttcaacacaggacccagaatttgtataggtaaagatcttagtttcattcaaatgaagatggtcgcagctgctttgttacagaagtttcacataca 13129731  T
Q  101 ggtggtggaaggccaccctgtaac 124  Q
    |||||||||||| |||||||||||    
T  13129730 ggtggtggaaggtcaccctgtaac 13129707  T

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Target: chr1; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 9 - 112
Target Start/End: Original strand, 19279366 - 19279469
Alignment:
Q  9 aatgcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtgg 108  Q
    ||||||||||| ||||| ||| | || ||||||||||  ||  ||||||||||||||||||||||| || | ||||||||||||||||||||||| ||||    
T  19279366 aatgcaggtccgagaagctgtctcggaaaagatattactttccttcaaatgaaaatggttgcagctgctgtattatggaagtttcgcatacaggtcgtgg 19279465  T
Q  109 aagg 112  Q
    ||||    
T  19279466 aagg 19279469  T

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Target: chr1; HSP #13
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 13204461 - 13204268
Alignment:
Q  1 tagctttcaatgcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcataca 100  Q
    ||||||||||| ||||||||||||||||| | || |||||| |||| ||  |||||||||| ||||| |||||| ||||||||  ||| |||| |||| |    
T  13204461 tagctttcaatacaggtcctagaagttgtttgggtaaagatcttagtttcattcaaatgaagatggtcgcagctgctttgttacagaattttcacataaa 13204362  T
Q  101 ggtggtggaaggccaccctgtaacgctgagaaattctattgcccttcgcatgaaacacggcttaaaggtcgaaatcagtaaaagatgcatttga 194  Q
    | | |||||||| ||||||||||| |  |  | |||| |||  |||| ||||||| | || ||||||||  || ||| ||||||||||||||||    
T  13204361 gatagtggaaggtcaccctgtaaccccaaagatttcttttgttcttcacatgaaatatggtttaaaggttaaagtcactaaaagatgcatttga 13204268  T

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Target: chr1; HSP #14
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 4 - 124
Target Start/End: Complemental strand, 13161520 - 13161400
Alignment:
Q  4 ctttcaatgcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggt 103  Q
    |||||||  |||| || |||| |||||| || |||||| |||| ||  |||||||||| ||||| |||||| |||||||| ||||||||| |||||||||    
T  13161520 ctttcaacacaggacccagaatttgtataggtaaagatcttagtttcattcaaatgaagatggtcgcagctgctttgttacggaagtttcacatacaggt 13161421  T
Q  104 ggtggaaggccaccctgtaac 124  Q
    ||||||||| |||| ||||||    
T  13161420 ggtggaaggtcaccttgtaac 13161400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 13065403 - 13065600
Alignment:
Q  1 tagctttcaatgcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcataca 100  Q
    |||||||||||||||| || ||||||||| | || |||||||| | ||| ||| ||||||| |||| ||| ||  || |  ||||||||||| |||||||    
T  13065403 tagctttcaatgcagggccaagaagttgtttgggtaaagatatcaccttcgttgaaatgaagatggctgccgcggctatactatggaagttttgcataca 13065502  T
Q  101 ggtggtggaaggccaccctgtaacgctgagaaattctattgcccttcgcatgaaacacggcttaaaggtcgaaatcagtaaaagatgcatttgatata 198  Q
      | ||||| || || |||||||| |  ||   ||||||| ||||  | |||||||| ||||| ||||||  | ||| ||||||||||||||||||||    
T  13065503 tttagtggatggtcatcctgtaactccaaggctttctattaccctcggaatgaaacatggcttgaaggtcatagtcactaaaagatgcatttgatata 13065600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 112
Target Start/End: Complemental strand, 13010720 - 13010664
Alignment:
Q  56 aatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaagg 112  Q
    |||||| ||||| ||||||  |||||||||||| ||||||||||| |||||||||||    
T  13010720 aatgaagatggtcgcagctgatttgttatggaaatttcgcatacaagtggtggaagg 13010664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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