View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11069A_low_278 (Length: 220)
Name: NF11069A_low_278
Description: NF11069A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11069A_low_278 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 8 - 220
Target Start/End: Original strand, 38323147 - 38323359
Alignment:
| Q |
8 |
cccaaagcctcctcaaagcacccaatctgcgcatatccattaaccatcgaattccaaagcacaacatctctaacaggcaattcctcaaacacctcatgtg |
107 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38323147 |
cccaaagcctcctcaaagcacccaatctgtgcatatccattaaccatcgaattccaaagcacaacatctctaacaggcaattcctcaaacacctcatgtg |
38323246 |
T |
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| Q |
108 |
catccacaaccaaccaaaatttcaaataagtagtaaccaaagcacttccaacaaaaacatccaattccaacccaaatttaaacaacaatccatgaatctt |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38323247 |
catccacaaccaaccaaaatttcaaataagtagtaaccaaagcacttccaacaaaaacatccaattccaacccaaatttaaacaacaatccatgaatctt |
38323346 |
T |
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| Q |
208 |
cttaacctcaaaa |
220 |
Q |
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||||||||||||| |
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| T |
38323347 |
cttaacctcaaaa |
38323359 |
T |
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