View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11069A_low_279 (Length: 219)
Name: NF11069A_low_279
Description: NF11069A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11069A_low_279 |
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Alignment Details
Target: chr1 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 18 - 202
Target Start/End: Original strand, 17811965 - 17812148
Alignment:
| Q |
18 |
agcatggtcccgttgagtcgtctgttgcaggttcttctccactggaagggggatggtgtacctgcactgcacgcgctccgacactctctttcttgaaccc |
117 |
Q |
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| T |
17811965 |
agcatggttccgttgagtcgtctgttgcaggttcttctccaccggaaggggggtggtgtacctgcactgcatgtgctctgaca--ctctttcttgaaccc |
17812062 |
T |
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| Q |
118 |
ctcacttctccagccatctatgcctggggtacggacatgagtaa-ccctcggggtggtaaggagctctcggattaatggtgaggaa |
202 |
Q |
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| T |
17812063 |
ctcacttctccagccatctattcctggggtacggacatgagtaacccctcggggtggtgaggagctctcggattaatggtgaggaa |
17812148 |
T |
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