View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11069A_low_283 (Length: 218)
Name: NF11069A_low_283
Description: NF11069A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11069A_low_283 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 182; Significance: 1e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 16 - 209
Target Start/End: Complemental strand, 164245 - 164052
Alignment:
| Q |
16 |
gtatttgttcctaacagtgcagtatctgacagtgctatttatataaagcgttctttcattctaatgcaactcaatagttcatttctaaccctttttatgg |
115 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
164245 |
gtatttgttcctaacattgcagtaactgacagtgctatttatataaagcgttctttcattctaatgcaactcaatagttcatttctaaccctttttatgg |
164146 |
T |
|
| Q |
116 |
tatcatgagcttttgcataacaacgaacttgatccatattttttgaacactctcagccatgtctgttgaatctctatccactactgattttctt |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
164145 |
tatcatgagcttttgcataacaacgaacttgatccatattttttgaacactctcagccatgtctgttgaatctctatccactactgatattctt |
164052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University