View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11069A_low_287 (Length: 216)
Name: NF11069A_low_287
Description: NF11069A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11069A_low_287 |
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Alignment Details
Target: chr1 (Bit Score: 169; Significance: 8e-91; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 21 - 193
Target Start/End: Complemental strand, 4359766 - 4359594
Alignment:
| Q |
21 |
cagacaaaccaagccgatcactgattctatacggcgatggcttagctcgtttcatcgatccatcatcttctcacacaaaccttcattctctcgcttctct |
120 |
Q |
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| T |
4359766 |
cagacaaaccaagccgatcactgattctatacggcgatggcttagctcgtttcatcgatccatcatcttctcacacaaaccttcattctctcgcttctct |
4359667 |
T |
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| Q |
121 |
ttcttcctgcgctttcttaactctctccaattccaattccaattccaatccctcaggttcctttctctcttct |
193 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
4359666 |
ttcttcctgcgctttcttaactctctccaattccaattccaatttcaatccctcaggttcctttctctcttct |
4359594 |
T |
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