View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11069A_low_288 (Length: 215)
Name: NF11069A_low_288
Description: NF11069A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11069A_low_288 |
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Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 45945720 - 45945928
Alignment:
| Q |
1 |
aggatcttacgatgttcttcgggaacatcaggtaagatagcaacaaccaaagggtacatggttttggtttttctcaatcctttggctaagccaacaacac |
100 |
Q |
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| T |
45945720 |
aggatcttacgatgttcttcaggaacatcaggtaagatagcaacaaccaaagggtacatggttttggtttttctcaatcctttggctaaaccaacaacac |
45945819 |
T |
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| Q |
101 |
ctttgatgtaatcagcgtttccagcaaggaaagtcacaaaggcacggcctttaccaccgtcgagttttggtttctcaacggtagcattgacggcggtggt |
200 |
Q |
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| T |
45945820 |
ctttgatgtaatcagcgtttccagcaaggaaagtcacaaaggcacggcctttaccaccgtcgagttttggtttctcaacggtagcattcacggcggtggt |
45945919 |
T |
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| Q |
201 |
ggtgattgc |
209 |
Q |
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| T |
45945920 |
ggtgattgc |
45945928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 143
Target Start/End: Complemental strand, 55221397 - 55221333
Alignment:
| Q |
79 |
cctttggctaagccaacaacacctttgatgtaatcagcgtttccagcaaggaaagtcacaaaggc |
143 |
Q |
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| T |
55221397 |
cctttggctaaaccaaccacacctttgacatagtcaccatttccaacaaggaaggtcacaaaggc |
55221333 |
T |
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