View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11069A_low_290 (Length: 212)
Name: NF11069A_low_290
Description: NF11069A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11069A_low_290 |
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Alignment Details
Target: chr4 (Bit Score: 176; Significance: 5e-95; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 20 - 199
Target Start/End: Original strand, 37181187 - 37181366
Alignment:
| Q |
20 |
catcacattggactattttggggttataactaatgtaggcaaccaaatgcttttgtcaaagtgaaacacaggaagttgaactaacttaaaattgcaaaag |
119 |
Q |
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| T |
37181187 |
catcacattggactattttggggttataactaatgtaggcaaccaaatgcttttgtcaaagtgaaacacaggaagttgaactaacttaaaattgcaaaag |
37181286 |
T |
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| Q |
120 |
ctcttatagttctccaaacaactctccttcaaatctctctcactctatataagaccatccactacccctttccatctcat |
199 |
Q |
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| T |
37181287 |
ctcttatagttctccaaacaactctccttcaaatctctctcactctatataagaccatccactacccctttccttctcat |
37181366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 69 - 188
Target Start/End: Complemental strand, 37180512 - 37180391
Alignment:
| Q |
69 |
cttttgtcaaagtgaaacacaggaagttgaactaacttaaaattgcaaaagctctt-atagttc-tccaaacaactctccttcaaatctctctcactcta |
166 |
Q |
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| T |
37180512 |
cttttgtcaaagtgaaacccaataagttgaactaactaaaaattgcaaaagctcttgatggttcttccgaactaccctccttcaaatctatctcaatcta |
37180413 |
T |
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| Q |
167 |
tataagaccatccactacccct |
188 |
Q |
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| T |
37180412 |
tataagaccacccactatccct |
37180391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 92 - 188
Target Start/End: Original strand, 37189365 - 37189463
Alignment:
| Q |
92 |
aagttgaactaacttaaaattgcaaaagctctt-atagttc-tccaaacaactctccttcaaatctctctcactctatataagaccatccactacccct |
188 |
Q |
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| T |
37189365 |
aagttgaactaactaaaaattgcaaaagctcttgatggttcatccgaactaccctccttcaaatctctctcaatctatataagatcacccactatccct |
37189463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 64 - 190
Target Start/End: Complemental strand, 38704569 - 38704443
Alignment:
| Q |
64 |
aaatgcttttgtcaaagtgaaacacaggaagttgaactaacttaaaattgcaaaagctcttatagttctccaaacaactctccttcaaatctctctcact |
163 |
Q |
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||||| |||||| ||||| ||||||||||||||||| |||||||| |||||||| ||| |||| |||||||| | || | ||||||||||| ||| |
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| T |
38704569 |
aaatggttttgtgaaagtaaaacacaggaagttgaagtaacttaagattgcaaatgcttttattattctccaagctaccttgattcaaatctcttctact |
38704470 |
T |
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| Q |
164 |
ctatataagaccatccactaccccttt |
190 |
Q |
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| T |
38704469 |
ctatataaaaccatccactatcccttt |
38704443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 65 - 199
Target Start/End: Complemental strand, 37188197 - 37188052
Alignment:
| Q |
65 |
aatgcttttgtcaaagtgaaacacaggaagttgaactaacttaa--------aattgcaaaagctctta-tagttctccaaacaactctccttcaaatct |
155 |
Q |
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|||| |||||||||||||||||| |||||||| ||| |||| || |||||||||||||| || | ||||||||||| || ||||||||||||| |
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| T |
37188197 |
aatgattttgtcaaagtgaaacagaggaagttaaacaaactaaagaaataaaaattgcaaaagctcgtagttgttctccaaactaccctccttcaaatct |
37188098 |
T |
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| Q |
156 |
ctctcactctatata--agaccatccactacccctttccatctcat |
199 |
Q |
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| T |
37188097 |
tgcttactctatatataagaccatccactactcctttccttctcat |
37188052 |
T |
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