View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11069A_low_292 (Length: 211)
Name: NF11069A_low_292
Description: NF11069A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11069A_low_292 |
 | |
|
| [»] chr8 (2 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 141; Significance: 4e-74; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 9 - 211
Target Start/End: Complemental strand, 8700015 - 8699813
Alignment:
| Q |
9 |
ttattctagaactattatggattaactttgtaagcggttcaggcagcacctgaaattttattgcagtttttacttgatnnnnnnnnnngttttaaataag |
108 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| ||||| | |||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
8700015 |
ttattctagaactattatggattaagtttgtaagcggttcaagcagctcttgaaattttattgcagtttttacttgataaaaaaaaaagttttaaataag |
8699916 |
T |
|
| Q |
109 |
tattttctattctatcctagaatacttaatgagatggtgaggaatctcctacaagtcttgatttcaaatctagaagagatttgtgattcattgtgatgcc |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
8699915 |
tattttctattctatcctagaatacttaatgagatggtgaggaatctcctagaggtcttgatttcaaatctagaagagttttgtaattcattgtgatgcc |
8699816 |
T |
|
| Q |
209 |
tta |
211 |
Q |
| |
|
||| |
|
|
| T |
8699815 |
tta |
8699813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 146
Target Start/End: Original strand, 14382892 - 14382932
Alignment:
| Q |
106 |
aagtattttctattctatcctagaatacttaatgagatggt |
146 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| |||||||| |
|
|
| T |
14382892 |
aagtattttctattctatcctaaaatacttaaagagatggt |
14382932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 9 - 86
Target Start/End: Complemental strand, 52773604 - 52773527
Alignment:
| Q |
9 |
ttattctagaactattatggattaactttgtaagcggttcaggcagcacctgaaattttattgcagtttttacttgat |
86 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
52773604 |
ttattctagaactattacggactaactttgtaagcggttgaggcagctcctgaaattttattgcagtttttacttgat |
52773527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University