View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11069A_low_3 (Length: 584)
Name: NF11069A_low_3
Description: NF11069A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11069A_low_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 304 - 578
Target Start/End: Complemental strand, 2274304 - 2274030
Alignment:
| Q |
304 |
ctcaattaacgtatgtttctaatctcactatttaggaacatgatcagagacatcgacaaagatcatcagaggtttaagagagttgttgtgatcacgatga |
403 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2274304 |
ctcaattaatgtatgtttctaatctcactatttaggtacatgatcagagacatcgacaaagatcatcagaggtttaagagagttgttgtgatcacgatga |
2274205 |
T |
|
| Q |
404 |
atttattcttggcattgattatgtttgctgcaatgaatatatcatcatattttggtaaattcatggtacaacataacattgctgtgatgctcatagtcct |
503 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2274204 |
atttattcttggcattgattatgtttgctgcaatgaatatatcatcatattttggtaaatttatggtacaacataacattgctgtgatgctcatagtcct |
2274105 |
T |
|
| Q |
504 |
tgctgttgtttcgatttttcaaatagcacttaatattggaagtacactacatcgtgtccctaatcctaaccctaa |
578 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
2274104 |
tgctgttgtttcgatttttcaaatagcacttaatattggaagtacactacatcgtgtccctaaccctaaccctaa |
2274030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 315 - 578
Target Start/End: Complemental strand, 2272735 - 2272472
Alignment:
| Q |
315 |
tatgtttctaatctcactatttaggaacatgatcagagacatcgacaaagatcatcagaggtttaagagagttgttgtgatcacgatgaatttattcttg |
414 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2272735 |
tatgtttctaatctcactatttaggtacatgatgagagacatcgacaaagatcatcagaggtttaagagagttgttgtgatcacgatgaatttattcttg |
2272636 |
T |
|
| Q |
415 |
gcattgattatgtttgctgcaatgaatatatcatcatattttggtaaattcatggtacaacataacattgctgtgatgctcatagtccttgctgttgttt |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2272635 |
gcattgattatgtttgctgcaatgaatatatcatcatattttggtaaattcatggtacaacataacattgctgtgatgctcatagtccttgctgttgttt |
2272536 |
T |
|
| Q |
515 |
cgatttttcaaatagcacttaatattggaagtacactacatcgtgtccctaatcctaaccctaa |
578 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
2272535 |
cgatttttcaaatagcacttaatattggaagtacactacatcgtgtccctaaccctaaccctaa |
2272472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 77 - 224
Target Start/End: Complemental strand, 2274531 - 2274384
Alignment:
| Q |
77 |
ctgtgatgtttgttactgcacacacctatttaagtcgcaacctattcagtcaaagtacaaacaaaagagtcgtcaacctatattcaccaaatgaagctct |
176 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2274531 |
ctgtgatgtttgttactgcacacacctatttaagtcgcaacctatccagtcaaagtacaaacaaaagagtcgtcaacctatattcaccaaatgaagctct |
2274432 |
T |
|
| Q |
177 |
gtgtgtgctgccaaataatggattcaattaatcagtggtaatcaaatc |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2274431 |
gtgtgtgctgccaaataatggattcaattaatcagtggtaatcaaatc |
2274384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 102 - 224
Target Start/End: Complemental strand, 2272950 - 2272828
Alignment:
| Q |
102 |
ctatttaagtcgcaacctattcagtcaaagtacaaacaaaagagtcgtcaacctatattcaccaaatgaagctctgtgtgtgctgccaaataatggattc |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2272950 |
ctatttaagtcgcaacctattcagtcaaagtacaaacaaaagagtcgtcaacctatattcaccaaatgaagctctgtgtgtgctgccaaataatggattc |
2272851 |
T |
|
| Q |
202 |
aattaatcagtggtaatcaaatc |
224 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
2272850 |
aattaatcagtggtaatcaaatc |
2272828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 371 - 578
Target Start/End: Original strand, 373328 - 373535
Alignment:
| Q |
371 |
agaggtttaagagagttgttgtgatcacgatgaatttattcttggcattgattatgtttgctgcaatgaatatatcatcatattttggtaaattcatggt |
470 |
Q |
| |
|
|||||||||||| | | ||||||| || |||| ||||| ||||| |||||||||| | | |||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
373328 |
agaggtttaagaaaatagttgtgactacaatgagtttatccttggtattgattatgatcggtgcaatgaatatgtcatcatattttgggaaattcatggc |
373427 |
T |
|
| Q |
471 |
acaacataacattgctgtgatgctcatagtccttgctgttgtttcgatttttcaaatagcacttaatattggaagtacactacatcgtgtccctaatcct |
570 |
Q |
| |
|
||||| ||| |||||||||||||||| || |||||||||||| | ||||||||||||||| | ||| || ||||||||||||||||| || ||| |
|
|
| T |
373428 |
ggaacatgacactgctgtgatgctcatactcattgctgttgttttcttatttcaaatagcacttggttatggtaggacactacatcgtgtcccaaaccct |
373527 |
T |
|
| Q |
571 |
aaccctaa |
578 |
Q |
| |
|
|||||||| |
|
|
| T |
373528 |
aaccctaa |
373535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University