View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11069A_low_31 (Length: 400)

Name: NF11069A_low_31
Description: NF11069A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11069A_low_31
NF11069A_low_31
[»] chr7 (7 HSPs)
chr7 (6-305)||(4866228-4866527)
chr7 (6-129)||(35937176-35937299)
chr7 (300-391)||(4873721-4873812)
chr7 (279-386)||(1751556-1751662)
chr7 (124-219)||(9046572-9046678)
chr7 (293-365)||(6531857-6531930)
chr7 (137-175)||(35103696-35103734)
[»] chr1 (10 HSPs)
chr1 (6-130)||(26626331-26626455)
chr1 (6-130)||(49117665-49117789)
chr1 (16-130)||(15821207-15821320)
chr1 (273-388)||(3362961-3363075)
chr1 (279-375)||(7839907-7840003)
chr1 (21-65)||(26635757-26635801)
chr1 (127-175)||(28553762-28553810)
chr1 (307-388)||(15421775-15421855)
chr1 (126-175)||(17734722-17734771)
chr1 (179-227)||(898463-898511)
[»] chr2 (4 HSPs)
chr2 (21-130)||(21691609-21691720)
chr2 (283-380)||(21515753-21515848)
chr2 (197-338)||(35406946-35407088)
chr2 (318-380)||(21511339-21511401)
[»] chr3 (2 HSPs)
chr3 (184-300)||(6461913-6462029)
chr3 (324-388)||(17576600-17576664)
[»] chr4 (6 HSPs)
chr4 (189-382)||(36709123-36709316)
chr4 (279-391)||(17465491-17465600)
chr4 (319-388)||(17295109-17295178)
chr4 (322-388)||(11376882-11376948)
chr4 (322-388)||(29367715-29367781)
chr4 (128-169)||(12634139-12634180)
[»] chr5 (2 HSPs)
chr5 (279-388)||(4237280-4237390)
chr5 (325-391)||(19222611-19222678)
[»] chr8 (1 HSPs)
chr8 (20-59)||(17605912-17605951)
[»] scaffold0148 (1 HSPs)
scaffold0148 (287-388)||(13164-13265)


Alignment Details
Target: chr7 (Bit Score: 292; Significance: 1e-164; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 6 - 305
Target Start/End: Original strand, 4866228 - 4866527
Alignment:
Q  6 attcccatccttgaaagagcagcaattaccatttgttgaatcatttcagactgtagagaaccaccatcagatgcactagtaattgaaggagcagctgcag 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4866228 attcccatccttgaaagagcagcaattaccatttgttgaatcatttcagactgtagagaaccaccatcagatgcactagtaattgaaggagcagctgcag 4866327  T
Q  106 agctagtagtggcatgtaaagcttgattatcattgagatacactcatgtattctgaaagaaaacatgaaaatattgtgtttagaaatgaatttaacataa 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  4866328 agctagtagtggcatgtaaagcttgattatcattgagatacactcatgtattctgaaagaaaacatgagaatattgtgtttagaaatgaatttaacataa 4866427  T
Q  206 gatagagatatagacttggaattgttagtatttatcgttaagatctaacaacaatcctaaggcttctttataaaatctgaatttaaacaaagaaactatt 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  4866428 gatagagatatagacttggaattgttagtatttatcgttaagatctaacaacaatcctaaggctactttataaaatctgaatttaaacaaagaaactatt 4866527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 6 - 129
Target Start/End: Original strand, 35937176 - 35937299
Alignment:
Q  6 attcccatccttgaaagagcagcaattaccatttgttgaatcatttcagactgtagagaaccaccatcagatgcactagtaattgaaggagcagctgcag 105  Q
    ||||||||  |||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||  |||||||    
T  35937176 attcccatatttgatagagcagcaagtaccatttgttgaatcatttcaggctgtagagaaccaccatcagatgcactagtaattgaaggaggcgctgcag 35937275  T
Q  106 agctagtagtggcatgtaaagctt 129  Q
    ||||||||||||||||||||||||    
T  35937276 agctagtagtggcatgtaaagctt 35937299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 300 - 391
Target Start/End: Original strand, 4873721 - 4873812
Alignment:
Q  300 actattgaacttttaatacttaatcttttcagctaatcatcattgaaaacgaaatctgtaattacaataactctctgtggaacgatattctt 391  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  4873721 actattgaacttttaatacttaatcttttcagctaatcatcattgaaaacgaaatctgtaattacaataactctctgtagaacgatattctt 4873812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 279 - 386
Target Start/End: Original strand, 1751556 - 1751662
Alignment:
Q  279 aatctgaatttaaacaaagaaactattgaacttttaatacttaatcttttcagctaatcatcattgaaaacgaaatctgtaattacaataactctctgtg 378  Q
    ||||||||||| ||| |||||||||||  |||| ||| |||| |||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||    
T  1751556 aatctgaattttaaccaagaaactattcgacttctaa-acttgatcttttctgctaatcaacattgaaaacgaaatcggtaattacaataactctctgtg 1751654  T
Q  379 gaacgata 386  Q
    ||||||||    
T  1751655 gaacgata 1751662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 124 - 219
Target Start/End: Original strand, 9046572 - 9046678
Alignment:
Q  124 aagcttgattatcattgagatacactcatgtattctgaaagaaaacatgaa-----------aatattgtgtttagaaatgaatttaacataagatagag 212  Q
    |||||||||||||||||||||||| |||||||||||||||| |||||||||           |||||||| |||||||| ||||||||||||| ||||||    
T  9046572 aagcttgattatcattgagatacattcatgtattctgaaaggaaacatgaaatgcaaaagagaatattgtctttagaaacgaatttaacataaaatagag 9046671  T
Q  213 atataga 219  Q
    |||||||    
T  9046672 atataga 9046678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 293 - 365
Target Start/End: Original strand, 6531857 - 6531930
Alignment:
Q  293 caaagaaactattgaactt-ttaatacttaatcttttcagctaatcatcattgaaaacgaaatctgtaattaca 365  Q
    ||||||||||||||||||| |||||  | |||| |||||||||||||| ||||||||  ||||| |||||||||    
T  6531857 caaagaaactattgaacttcttaatcttaaatcatttcagctaatcataattgaaaagaaaatcggtaattaca 6531930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 137 - 175
Target Start/End: Complemental strand, 35103734 - 35103696
Alignment:
Q  137 attgagatacactcatgtattctgaaagaaaacatgaaa 175  Q
    ||||| ||||| |||||||||||||||||||||||||||    
T  35103734 attgaaatacattcatgtattctgaaagaaaacatgaaa 35103696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 93; Significance: 4e-45; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 6 - 130
Target Start/End: Original strand, 26626331 - 26626455
Alignment:
Q  6 attcccatccttgaaagagcagcaattaccatttgttgaatcatttcagactgtagagaaccaccatcagatgcactagtaattgaaggagcagctgcag 105  Q
    ||||||||  |||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||  |||||||    
T  26626331 attcccatatttgatagagcagcaagtaccatttgttgaatcatttcaggctgtagagaaccaccatcagatgcactagtaattgtaggaggcgctgcag 26626430  T
Q  106 agctagtagtggcatgtaaagcttg 130  Q
    |||||||||||||||||||||||||    
T  26626431 agctagtagtggcatgtaaagcttg 26626455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 6 - 130
Target Start/End: Complemental strand, 49117789 - 49117665
Alignment:
Q  6 attcccatccttgaaagagcagcaattaccatttgttgaatcatttcagactgtagagaaccaccatcagatgcactagtaattgaaggagcagctgcag 105  Q
    ||||||||  |||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||  |||||||    
T  49117789 attcccatatttgatagagcagcaagtaccatttgttgaatcatttcaggctgtagagaaccaccatcagatgcactagtaattgtaggaggcgctgcag 49117690  T
Q  106 agctagtagtggcatgtaaagcttg 130  Q
    |||||||||||||||||||||||||    
T  49117689 agctagtagtggcatgtaaagcttg 49117665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 16 - 130
Target Start/End: Original strand, 15821207 - 15821320
Alignment:
Q  16 ttgaaagagcagcaattaccatttgttgaatcatttcagactgtagagaaccaccatcagatgcactagtaattgaaggagcagctgcagagctagtagt 115  Q
    ||||||||||||||| ||| |||||||||||| |||||| |||||||||| ||||||||||||||||||||||| | | | || |||||||| |||||||    
T  15821207 ttgaaagagcagcaagtacaatttgttgaatcttttcag-ctgtagagaatcaccatcagatgcactagtaattaaggtatcaactgcagagatagtagt 15821305  T
Q  116 ggcatgtaaagcttg 130  Q
    | |||||||||||||    
T  15821306 gacatgtaaagcttg 15821320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 273 - 388
Target Start/End: Complemental strand, 3363075 - 3362961
Alignment:
Q  273 ttataaaatctgaatttaaacaaagaaactattgaacttttaatacttaatcttttcagctaatcatcattgaaaacgaaatctgtaattacaataactc 372  Q
    ||||| ||||||||||||||| || ||||| |||||  |  ||| |||||||||||||||||||||  ||||||||||||||| ||||||||||||||||    
T  3363075 ttatataatctgaatttaaaccaa-aaactgttgaaactcgaatgcttaatcttttcagctaatcacaattgaaaacgaaatcggtaattacaataactc 3362977  T
Q  373 tctgtggaacgatatt 388  Q
    |||||| ||| |||||    
T  3362976 tctgtgaaacaatatt 3362961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 279 - 375
Target Start/End: Original strand, 7839907 - 7840003
Alignment:
Q  279 aatctgaatttaaacaaagaaactattgaacttttaatactt-aatcttttcagctaatcatcattgaaaacgaaatctgtaattacaataactctct 375  Q
    ||||| |||||  ||||||||||||||  |||| ||| |||| || ||||||| ||||||| ||||||||||||||||  ||||||||||||||||||    
T  7839907 aatctaaattttgacaaagaaactattcgacttctaa-acttgaaccttttcaactaatcaacattgaaaacgaaatcgataattacaataactctct 7840003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 21 - 65
Target Start/End: Original strand, 26635757 - 26635801
Alignment:
Q  21 agagcagcaattaccatttgttgaatcatttcagactgtagagaa 65  Q
    |||||||||| ||||||||||||||||||||||| ||||||||||    
T  26635757 agagcagcaagtaccatttgttgaatcatttcaggctgtagagaa 26635801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 127 - 175
Target Start/End: Original strand, 28553762 - 28553810
Alignment:
Q  127 cttgattatcattgagatacactcatgtattctgaaagaaaacatgaaa 175  Q
    ||||||| | ||||||||||| |||||||||||||||||||||||||||    
T  28553762 cttgattgttattgagatacattcatgtattctgaaagaaaacatgaaa 28553810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 388
Target Start/End: Original strand, 15421775 - 15421855
Alignment:
Q  307 aacttttaatacttaatcttttcagctaatcatcattgaaaacgaaatctgtaattacaataactctctgtggaacgatatt 388  Q
    ||||||||| || ||| |||||||||||||||  ||||||||  |||||  |||||||||||||||  |||||||| |||||    
T  15421775 aacttttaa-acctaaacttttcagctaatcacaattgaaaagaaaatcaataattacaataactccatgtggaacaatatt 15421855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 175
Target Start/End: Complemental strand, 17734771 - 17734722
Alignment:
Q  126 gcttgattatcattgagatacactcatgtattctgaaagaaaacatgaaa 175  Q
    |||||||| | ||| ||||||| |||||||||||||||| ||||||||||    
T  17734771 gcttgattgttattaagatacattcatgtattctgaaaggaaacatgaaa 17734722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 227
Target Start/End: Original strand, 898463 - 898511
Alignment:
Q  179 ttgtgtttagaaatgaatttaacataagatagagatatagacttggaat 227  Q
    |||| |||||||| ||||||||| ||| ||||||| |||||||||||||    
T  898463 ttgtctttagaaaagaatttaacttaaaatagagaaatagacttggaat 898511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 21 - 130
Target Start/End: Complemental strand, 21691720 - 21691609
Alignment:
Q  21 agagcagcaattaccatttgttgaatcatttcagactgtagagaaccaccatcagat--gcactagtaattgaaggagcagctgcagagctagtagtggc 118  Q
    |||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||  |||||||||||||||||||  ||||||||||||||||| ||    
T  21691720 agagcagcaagtaccatttgttgaatcatttcaggctgtagagaagcaccatcagatgcgcactagtaattgaaggagtcgctgcagagctagtagtagc 21691621  T
Q  119 atgtaaagcttg 130  Q
    ||||||||||||    
T  21691620 atgtaaagcttg 21691609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 283 - 380
Target Start/End: Complemental strand, 21515848 - 21515753
Alignment:
Q  283 tgaatttaaacaaagaaactattgaacttttaatacttaatcttttcagctaatcatcattgaaaacgaaatctgtaattacaataactctctgtgga 380  Q
    ||||||||||| |||||   |||||||| ||||| ||||||||||||||||||||||||||||||||   ||| ||||||||  ||||||||| ||||    
T  21515848 tgaatttaaaccaagaac--attgaactcttaatccttaatcttttcagctaatcatcattgaaaacatgatcagtaattactttaactctctatgga 21515753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 197 - 338
Target Start/End: Original strand, 35406946 - 35407088
Alignment:
Q  197 ttaacataagatagagatatagacttggaattgtt-agtatttatcgttaagatctaacaacaatcctaaggcttctttataaaatctgaattt-aaaca 294  Q
    ||||||||| |||||||||||||   ||||||||| ||||||| || |||  ||   || ||||||||||| | ||||||||| |||||||||| ||||     
T  35406946 ttaacataaaatagagatatagatagggaattgtttagtatttgtcattacaattagaccacaatcctaagacctctttataatatctgaatttaaaacc 35407045  T
Q  295 aagaaactattgaacttttaatacttaatcttttcagctaatca 338  Q
    || |||| ||||||||| ||| |||| |||||||||||||||||    
T  35407046 aacaaaccattgaacttataa-acttgatcttttcagctaatca 35407088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 318 - 380
Target Start/End: Complemental strand, 21511401 - 21511339
Alignment:
Q  318 cttaatcttttcagctaatcatcattgaaaacgaaatctgtaattacaataactctctgtgga 380  Q
    |||||||||||||||||| ||||||||||||| | ||| ||||||||  ||||||| ||||||    
T  21511401 cttaatcttttcagctaagcatcattgaaaacaagatcggtaattactttaactctatgtgga 21511339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 7e-31; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 184 - 300
Target Start/End: Original strand, 6461913 - 6462029
Alignment:
Q  184 tttagaaatgaatttaacataagatagagatatagacttggaattgttagtatttatcgttaagatctaacaacaatcctaaggcttctttataaaatct 283  Q
    ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| || ||||||||| |  ||| ||||||| ||||||||||| |    
T  6461913 tttagaaatgaatttaatataagatagagatatagacttggaactgttagtatttatcattcagatctaaccaatatcttaaggctcctttataaaattt 6462012  T
Q  284 gaatttaaacaaagaaa 300  Q
     ||||||||| ||||||    
T  6462013 taatttaaaccaagaaa 6462029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 324 - 388
Target Start/End: Complemental strand, 17576664 - 17576600
Alignment:
Q  324 cttttcagctaatcatcattgaaaacgaaatctgtaattacaataactctctgtggaacgatatt 388  Q
    |||||||||||||||  ||| ||||  |||||  ||||||||| |||||| ||||||||||||||    
T  17576664 cttttcagctaatcacaatttaaaagaaaatcaataattacaacaactctttgtggaacgatatt 17576600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 189 - 382
Target Start/End: Complemental strand, 36709316 - 36709123
Alignment:
Q  189 aaatgaatttaacataagatagagatatagacttggaattgtt-agtatttatcgttaagatctaacaacaatcctaaggcttctttataaaatctgaat 287  Q
    ||||||||||||||||  |||  || ||||||  ||||||||| ||| ||| || ||||||| | || ||||||||||| | | ||||||  || |||||    
T  36709316 aaatgaatttaacatagaataaggaaatagacaaggaattgtttagtttttgtcattaagatttgaccacaatcctaagacctttttatattatatgaat 36709217  T
Q  288 ttaaacaaagaaactattgaacttttaatacttaatcttttcagctaatcatcattgaaaacgaaatctgtaattacaataactctctgtggaac 382  Q
    |||||| || ||| | ||||||||| |||||||||||||||||| |||| | |||||||||||||||   |||||||||||||||| ||| ||||    
T  36709216 ttaaaccaa-aaattgttgaactttgaatacttaatcttttcagataattaacattgaaaacgaaattgataattacaataactctttgtagaac 36709123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 279 - 391
Target Start/End: Original strand, 17465491 - 17465600
Alignment:
Q  279 aatctgaatttaaacaaagaaactattgaacttttaatacttaatcttttcagctaatcatcattgaaaacgaaatctgtaattacaataactctctgtg 378  Q
    |||||||| |||||| |||||   |||||| | ||||| |||||||||||||||||||||||| ||||||| | ||| ||||||||  |||||||||||     
T  17465491 aatctgaaattaaactaagaac--attgaaatcttaatccttaatcttttcagctaatcatcactgaaaacaagatcggtaattactttaactctctgt- 17465587  T
Q  379 gaacgatattctt 391  Q
    |||||||| ||||    
T  17465588 gaacgataatctt 17465600  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 319 - 388
Target Start/End: Complemental strand, 17295178 - 17295109
Alignment:
Q  319 ttaatcttttcagctaatcatcattgaaaacgaaatctgtaattacaataactctctgtggaacgatatt 388  Q
    |||||| |||||||||||||| |||||||| |||||| |||| |||||||||||| || ||||| |||||    
T  17295178 ttaatcatttcagctaatcataattgaaaaagaaatcggtaagtacaataactctttgaggaacaatatt 17295109  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 322 - 388
Target Start/End: Complemental strand, 11376948 - 11376882
Alignment:
Q  322 atcttttcagctaatcatcattgaaaacgaaatctgtaattacaataactctctgtggaacgatatt 388  Q
    |||||||||||||||||| |||  |||  ||||| |||||||||| ||||| | |||||||||||||    
T  11376948 atcttttcagctaatcataattagaaagaaaatcggtaattacaacaactccccgtggaacgatatt 11376882  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 322 - 388
Target Start/End: Original strand, 29367715 - 29367781
Alignment:
Q  322 atcttttcagctaatcatcattgaaaacgaaatctgtaattacaataactctctgtggaacgatatt 388  Q
    |||||||||||||||||| |||  |||  ||||  |||||||||| |||||| ||||||||||||||    
T  29367715 atcttttcagctaatcataattagaaagaaaattggtaattacaacaactctttgtggaacgatatt 29367781  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 169
Target Start/End: Complemental strand, 12634180 - 12634139
Alignment:
Q  128 ttgattatcattgagatacactcatgtattctgaaagaaaac 169  Q
    |||||||| ||||||||||| |||||||||||||||| ||||    
T  12634180 ttgattattattgagatacattcatgtattctgaaaggaaac 12634139  T

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Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 279 - 388
Target Start/End: Original strand, 4237280 - 4237390
Alignment:
Q  279 aatctgaatttaaacaaagaaacta-ttgaacttttaatacttaatcttttcagctaatcatcattgaaaacgaaatctgtaattacaataactctctgt 377  Q
    ||||||||||| ||| |||||| |  ||||||||  |||||||||| |||||| ||||| | ||||| |||||||||| |||||||||||||||||| ||    
T  4237280 aatctgaattttaaccaagaaaattgttgaacttcgaatacttaatattttcaactaattaacattggaaacgaaatcggtaattacaataactctccgt 4237379  T
Q  378 ggaacgatatt 388  Q
    | |||||||||    
T  4237380 gaaacgatatt 4237390  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 325 - 391
Target Start/End: Original strand, 19222611 - 19222678
Alignment:
Q  325 ttttcagctaatcatcattgaaaacgaaatctgtaattaca-ataactctctgtggaacgatattctt 391  Q
    ||||||||||||||| |||||||| |||||| ||||||||| |||||||  |||||| ||||| ||||    
T  19222611 ttttcagctaatcataattgaaaaggaaatcggtaattacatataactccatgtggatcgataatctt 19222678  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 20 - 59
Target Start/End: Original strand, 17605912 - 17605951
Alignment:
Q  20 aagagcagcaattaccatttgttgaatcatttcagactgt 59  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  17605912 aagagcagaaattaccatttgttgaatcatttcagactgt 17605951  T

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Target: scaffold0148 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 287 - 388
Target Start/End: Original strand, 13164 - 13265
Alignment:
Q  287 tttaaacaaagaaactattgaacttttaatacttaatcttttcagctaatcatcattgaaaacgaaatctgtaattacaataactctctgtggaacgata 386  Q
    ||||| ||||||||||||||||||| | |  ||||||| ||||| |||||||| | | | || |||||| ||||| | || ||||||||| |||||||||    
T  13164 tttaatcaaagaaactattgaacttctgaaccttaatcatttcaactaatcataactaagaaagaaatcggtaatcaaaacaactctctgaggaacgata 13263  T
Q  387 tt 388  Q
    ||    
T  13264 tt 13265  T

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