View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11069A_low_33 (Length: 397)

Name: NF11069A_low_33
Description: NF11069A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11069A_low_33
NF11069A_low_33
[»] chr1 (35 HSPs)
chr1 (1-211)||(5939650-5939859)
chr1 (30-264)||(28522879-28523112)
chr1 (122-264)||(46688759-46688899)
chr1 (33-220)||(50011719-50011907)
chr1 (1-175)||(15456705-15456878)
chr1 (130-264)||(26991775-26991914)
chr1 (175-264)||(30627134-30627223)
chr1 (175-264)||(45467983-45468072)
chr1 (1-178)||(1834779-1834956)
chr1 (173-250)||(23082429-23082506)
chr1 (5-176)||(45370746-45370919)
chr1 (175-264)||(49650119-49650208)
chr1 (1-164)||(35718982-35719145)
chr1 (173-264)||(6597462-6597553)
chr1 (173-264)||(27163054-27163145)
chr1 (1-178)||(47677021-47677198)
chr1 (2-164)||(26991921-26992080)
chr1 (7-145)||(30796562-30796701)
chr1 (200-264)||(39092967-39093031)
chr1 (130-264)||(35718836-35718975)
chr1 (172-238)||(38790605-38790671)
chr1 (1-178)||(12705325-12705504)
chr1 (103-176)||(27163173-27163246)
chr1 (173-264)||(2356231-2356323)
chr1 (106-176)||(13004224-13004294)
chr1 (74-176)||(39092820-39092922)
chr1 (103-176)||(18898275-18898348)
chr1 (213-250)||(22767175-22767212)
chr1 (124-176)||(31437064-31437116)
chr1 (190-242)||(37586495-37586547)
chr1 (1-56)||(30627391-30627446)
chr1 (117-176)||(52898403-52898462)
chr1 (175-233)||(47675909-47675967)
chr1 (183-252)||(44343422-44343491)
chr1 (230-263)||(50011647-50011680)
[»] chr7 (30 HSPs)
chr7 (42-245)||(19735503-19735706)
chr7 (1-264)||(17503245-17503506)
chr7 (1-375)||(17549708-17550080)
chr7 (144-238)||(1964227-1964321)
chr7 (1-164)||(583851-584013)
chr7 (153-259)||(8352633-8352738)
chr7 (175-264)||(2842562-2842651)
chr7 (125-372)||(8515440-8515686)
chr7 (172-374)||(1837760-1837961)
chr7 (176-264)||(8488713-8488801)
chr7 (173-276)||(48294026-48294132)
chr7 (175-284)||(584070-584182)
chr7 (173-262)||(25173480-25173569)
chr7 (175-264)||(44592100-44592189)
chr7 (173-264)||(27399762-27399853)
chr7 (176-264)||(38974813-38974900)
chr7 (173-251)||(21294841-21294919)
chr7 (175-264)||(48557962-48558050)
chr7 (173-288)||(48767846-48767964)
chr7 (173-264)||(8055305-8055396)
chr7 (21-178)||(2842359-2842520)
chr7 (325-374)||(19735787-19735836)
chr7 (175-242)||(43786686-43786753)
chr7 (1-56)||(48557743-48557798)
chr7 (1-55)||(8515787-8515841)
chr7 (123-173)||(48767475-48767525)
chr7 (173-250)||(3641570-3641647)
chr7 (298-375)||(17503134-17503211)
chr7 (103-167)||(27399428-27399492)
chr7 (74-145)||(36452258-36452330)
[»] chr6 (12 HSPs)
chr6 (45-264)||(29465298-29465515)
chr6 (107-372)||(27753002-27753267)
chr6 (33-264)||(31766425-31766652)
chr6 (173-264)||(6812053-6812144)
chr6 (1-176)||(6811311-6811486)
chr6 (172-264)||(12919069-12919161)
chr6 (213-264)||(17096023-17096074)
chr6 (102-176)||(10373875-10373949)
chr6 (91-176)||(28188005-28188089)
chr6 (175-238)||(19687610-19687673)
chr6 (91-176)||(24326049-24326134)
chr6 (298-350)||(6812177-6812229)
[»] chr2 (28 HSPs)
chr2 (101-264)||(25749880-25750042)
chr2 (105-264)||(42029584-42029742)
chr2 (21-176)||(21848576-21848731)
chr2 (1-176)||(37847227-37847402)
chr2 (121-205)||(27957498-27957582)
chr2 (173-264)||(21848228-21848319)
chr2 (32-181)||(39446159-39446308)
chr2 (172-264)||(37456044-37456136)
chr2 (190-250)||(44059281-44059341)
chr2 (173-250)||(2968869-2968946)
chr2 (175-263)||(10624826-10624914)
chr2 (172-264)||(27559033-27559125)
chr2 (91-264)||(28967600-28967776)
chr2 (173-249)||(37847690-37847766)
chr2 (173-252)||(3703501-3703580)
chr2 (173-264)||(12671787-12671878)
chr2 (175-245)||(12863601-12863671)
chr2 (200-288)||(11916161-11916247)
chr2 (175-264)||(12184735-12184823)
chr2 (91-176)||(19140982-19141067)
chr2 (92-176)||(2969198-2969282)
chr2 (94-176)||(12671677-12671759)
chr2 (30-176)||(11916292-11916429)
chr2 (104-180)||(12184619-12184695)
chr2 (200-375)||(39446348-39446521)
chr2 (74-138)||(12016184-12016248)
chr2 (1-56)||(28967837-28967892)
chr2 (1-145)||(3703897-3704044)
[»] chr4 (39 HSPs)
chr4 (1-264)||(56397091-56397354)
chr4 (47-264)||(37450695-37450915)
chr4 (1-164)||(51175307-51175469)
chr4 (125-284)||(44991744-44991911)
chr4 (172-374)||(13678514-13678715)
chr4 (175-264)||(12191524-12191613)
chr4 (1-259)||(31767838-31768093)
chr4 (173-262)||(38068088-38068177)
chr4 (175-284)||(51175526-51175638)
chr4 (173-250)||(36904174-36904251)
chr4 (172-264)||(5744804-5744896)
chr4 (1-263)||(45832132-45832395)
chr4 (173-264)||(27064454-27064545)
chr4 (173-264)||(27085558-27085649)
chr4 (1-164)||(38068290-38068452)
chr4 (128-252)||(4711545-4711665)
chr4 (174-276)||(38168122-38168227)
chr4 (130-284)||(38068459-38068627)
chr4 (125-251)||(40445712-40445843)
chr4 (1-133)||(4711274-4711403)
chr4 (180-284)||(17058793-17058900)
chr4 (91-176)||(36622281-36622366)
chr4 (172-248)||(13665782-13665858)
chr4 (32-176)||(38067663-38067807)
chr4 (172-259)||(30482923-30483010)
chr4 (1-178)||(40445551-40445725)
chr4 (103-206)||(49551789-49551892)
chr4 (173-250)||(19853994-19854071)
chr4 (1-178)||(44991898-44992073)
chr4 (1-164)||(12191305-12191467)
chr4 (173-263)||(56228205-56228294)
chr4 (183-239)||(34929264-34929320)
chr4 (118-176)||(27064573-27064631)
chr4 (118-176)||(27085677-27085735)
chr4 (1-167)||(56228562-56228722)
chr4 (1-58)||(32409316-32409373)
chr4 (298-371)||(37450946-37451019)
chr4 (123-167)||(36456510-36456554)
chr4 (1-85)||(39718898-39718982)
[»] chr3 (35 HSPs)
chr3 (91-288)||(25701529-25701729)
chr3 (91-264)||(47142675-47142848)
chr3 (92-264)||(46981748-46981920)
chr3 (173-263)||(1559590-1559680)
chr3 (1-181)||(1559900-1560080)
chr3 (1-164)||(19610929-19611091)
chr3 (173-264)||(31833957-31834048)
chr3 (173-264)||(32552306-32552397)
chr3 (91-208)||(32721914-32722031)
chr3 (172-374)||(23059103-23059304)
chr3 (175-284)||(19611149-19611261)
chr3 (173-250)||(1151610-1151687)
chr3 (41-176)||(38585784-38585919)
chr3 (175-264)||(55222401-55222490)
chr3 (32-172)||(1292033-1292173)
chr3 (1-176)||(28131121-28131296)
chr3 (213-374)||(38585977-38586138)
chr3 (173-259)||(37526766-37526851)
chr3 (158-227)||(7325564-7325633)
chr3 (30-138)||(35540547-35540655)
chr3 (128-205)||(40242606-40242684)
chr3 (1-178)||(3935875-3936051)
chr3 (174-259)||(14903368-14903453)
chr3 (190-374)||(28131342-28131526)
chr3 (21-145)||(1151987-1152111)
chr3 (218-262)||(1294572-1294616)
chr3 (174-264)||(5992202-5992285)
chr3 (327-375)||(40243198-40243246)
chr3 (174-253)||(3935755-3935834)
chr3 (177-264)||(13778185-13778271)
chr3 (217-264)||(48098387-48098434)
chr3 (101-178)||(48098288-48098365)
chr3 (1-178)||(1292343-1292517)
chr3 (74-176)||(33428690-33428792)
chr3 (325-374)||(47142901-47142950)
[»] scaffold0110 (5 HSPs)
scaffold0110 (1-131)||(13549-13670)
scaffold0110 (1-131)||(21286-21407)
scaffold0110 (164-269)||(13663-13769)
scaffold0110 (164-269)||(21400-21506)
scaffold0110 (298-397)||(21924-22023)
[»] chr8 (20 HSPs)
chr8 (1-264)||(1581311-1581578)
chr8 (173-373)||(7176952-7177152)
chr8 (173-375)||(22800462-22800667)
chr8 (123-264)||(14523171-14523316)
chr8 (1-176)||(12796294-12796467)
chr8 (173-264)||(11989717-11989808)
chr8 (34-176)||(13281957-13282097)
chr8 (102-173)||(45251232-45251303)
chr8 (176-250)||(12795955-12796029)
chr8 (32-176)||(22800695-22800837)
chr8 (31-176)||(29637882-29638027)
chr8 (102-176)||(7177375-7177449)
chr8 (1-86)||(5423338-5423423)
chr8 (173-264)||(8693032-8693123)
chr8 (214-264)||(5423517-5423567)
chr8 (175-264)||(12532328-12532417)
chr8 (130-238)||(43976594-43976707)
chr8 (174-264)||(13282128-13282221)
chr8 (101-176)||(41438096-41438171)
chr8 (41-164)||(14523317-14523439)
[»] chr5 (17 HSPs)
chr5 (138-259)||(4898156-4898278)
chr5 (173-264)||(31066332-31066423)
chr5 (173-263)||(565353-565443)
chr5 (39-176)||(2552655-2552790)
chr5 (173-284)||(31046367-31046481)
chr5 (173-264)||(4396221-4396312)
chr5 (298-372)||(4740334-4740408)
chr5 (174-264)||(8516926-8517016)
chr5 (214-263)||(15958740-15958789)
chr5 (102-176)||(12883523-12883597)
chr5 (173-264)||(12883183-12883274)
chr5 (173-261)||(30312968-30313056)
chr5 (30-164)||(15958862-15958995)
chr5 (173-238)||(30350411-30350476)
chr5 (176-250)||(2553196-2553270)
chr5 (103-176)||(4395654-4395727)
chr5 (1-57)||(565002-565057)
[»] scaffold0007 (1 HSPs)
scaffold0007 (32-176)||(175210-175354)
[»] scaffold0568 (1 HSPs)
scaffold0568 (180-284)||(726-833)
[»] scaffold0086 (2 HSPs)
scaffold0086 (175-250)||(33242-33317)
scaffold0086 (32-172)||(33569-33708)
[»] scaffold0020 (1 HSPs)
scaffold0020 (175-252)||(11490-11567)


Alignment Details
Target: chr1 (Bit Score: 123; Significance: 4e-63; HSPs: 35)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 5939650 - 5939859
Alignment:
Q  1 ttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacggggaactatataaggacatgctctctcatg 100  Q
    ||||||||||||||| |||||||| ||| | |||||| |||||||||||||||||| |||| | |||||||  ||||||| ||||||   ||||||| ||    
T  5939650 ttaacaaggaccactccccattaaggaccccccattggaggaagaaaaaatgagtccctataaagcaacggc-aactatacaaggaccctctctctcctg 5939748  T
Q  101 ggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaataaattatttttatataatgatgtaa 200  Q
    ||||||||||||| | ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  5939749 ggcaactaacgggccccacgtgtaaaagaagtaataaaatatgtactggttggtcccacttgcagaagaagtaataaattatttttgtataatgatgtaa 5939848  T
Q  201 agttagtggga 211  Q
    |||||| ||||    
T  5939849 agttagaggga 5939859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 30 - 264
Target Start/End: Complemental strand, 28523112 - 28522879
Alignment:
Q  30 ctccattgaaggaagaaaaaatgagtctctattatgcaacggggaactatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaaga 129  Q
    ||||||||||| |||||||||||||||| ||||| |||||| | |||||||||| ||| | ||||||| | ||||||||||| | | |||||||||||||    
T  28523112 ctccattgaagaaagaaaaaatgagtctttattaagcaacgagcaactatataatgacct-ctctctcttaggcaactaacgagccccacgtgtaaaaga 28523014  T
Q  130 agtaataaaatatgtattggttggtcccacttgcaaaagaagtaataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttcc 229  Q
    |||||||||||||||| |  ||| |  ||||||||||||||||||||||||||||||  |||||||| |||||||| || |  ||||||||  | ||| |    
T  28523013 agtaataaaatatgtactaattgatatcacttgcaaaagaagtaataaattatttttgcataatgatataaagttaatgtggcctatttaaaaactttgc 28522914  T
Q  230 attggagtccttattagtgtattgtcattggagtc 264  Q
    ||| |||||||||||||||||||||||||||||||    
T  28522913 attagagtccttattagtgtattgtcattggagtc 28522879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 122 - 264
Target Start/End: Complemental strand, 46688899 - 46688759
Alignment:
Q  122 gtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaataaattatttttatataatgatgtaaagttagtgggatctatttaag 221  Q
    ||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||  |||||||||    
T  46688899 gtaaaagaagtaataaa-tatgtactggttggtcctacttgcaaaagaagtaataaattatttttgtataatgatgtaaagttagtggg-cctatttaag 46688802  T
Q  222 tattttccattggagtccttattagtgtattgtcattggagtc 264  Q
    || ||| |||||||||| |||||||||||||||||||||||||    
T  46688801 tacttttcattggagtcattattagtgtattgtcattggagtc 46688759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 33 - 220
Target Start/End: Complemental strand, 50011907 - 50011719
Alignment:
Q  33 cattgaaggaagaaaaaatgagtctctattatgcaacggggaactatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagt 132  Q
    |||||||| |||||||||||||||| ||||| |||||    ||||||||||||||    |||||||||| ||||||||||||| |||| |||||||||||    
T  50011907 cattgaagaaagaaaaaatgagtctttattaagcaacatacaactatataaggac----tctctcatggacaactaacgggtcgcacgcgtaaaagaagt 50011812  T
Q  133 aataaaatatgta-----ttggttggtcccacttgcaaaagaagtaataaattatttttatataatgatgtaaagttagtgggatctatttaa 220  Q
    |||||||||||||     ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| | |||||||    
T  50011811 aataaaatatgtactggtttggttggtaccacttgcaaaagaagtaataaattatttttgtataatgatgtaaagttagcggggtatatttaa 50011719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 15456705 - 15456878
Alignment:
Q  1 ttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacggggaactatataaggacatgctctctcatg 100  Q
    ||||||||||||||| ||| |||| ||| | ||||||||||| |||||| |||||| |||||| ||||||   ||||||||||||||   ||||||| ||    
T  15456705 ttaacaaggaccactccccgttaaggactc-ccattgaaggaggaaaaattgagtccctattaagcaacgaacaactatataaggaccccctctctcctg 15456803  T
Q  101 ggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaat 175  Q
    || ||||||| |||| ||| | ||||||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  15456804 ggtaactaactggtcccacatttaaaagaagtaataaaatatgtattagttggtcccacttgcaaaagaggtaat 15456878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 130 - 264
Target Start/End: Complemental strand, 26991914 - 26991775
Alignment:
Q  130 agtaataaaatatgtattggttggtcccacttg-caaaagaagtaa----taaattatttttatataatgatgtaaagttagtgggatctatttaagtat 224  Q
    ||||||||||| |||| |  |||||||||||||  ||||| |||||    |||||||||||| | ||||||||||||| ||||| ||  ||||||||||     
T  26991914 agtaataaaatgtgtactacttggtcccacttgtaaaaaggagtaatatgtaaattatttttgtttaatgatgtaaagatagtgagacatatttaagtac 26991815  T
Q  225 tttccattggagtccttattagtgtattgtcattggagtc 264  Q
    ||| |||||||||||||||||||||||||| |||||||||    
T  26991814 ttttcattggagtccttattagtgtattgttattggagtc 26991775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 175 - 264
Target Start/End: Complemental strand, 30627223 - 30627134
Alignment:
Q  175 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 264  Q
    |||||||||||| | ||||||||||||| ||||||||  |||||||||||||| |||| ||||| |||||| ||||||||||||||||||    
T  30627223 taaattatttttgtttaatgatgtaaagatagtgggacatatttaagtatttttcatttgagtctttattaatgtattgtcattggagtc 30627134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 175 - 264
Target Start/End: Complemental strand, 45468072 - 45467983
Alignment:
Q  175 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 264  Q
    |||||||||||| | ||||||||||||| ||||||||  ||||||| |||||| |||||||||| |||| ||||||||||||||||||||    
T  45468072 taaattatttttgtttaatgatgtaaagatagtgggacatatttaaatatttttcattggagtcattatcagtgtattgtcattggagtc 45467983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 1834779 - 1834956
Alignment:
Q  1 ttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacggggaactatataagga-catgctctctcat 99  Q
    ||||||||||||||| ||| |||| ||| |||||||  |||||||||||| ||||| |  ||| | |||||  ||||||||||||| ||| |||||||||    
T  1834779 ttaacaaggaccactccccgttaaggaccctccattagaggaagaaaaaacgagtccccgttaaggaacggacaactatataaggatcat-ctctctcat 1834877  T
Q  100 gggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgca-aaagaagtaataaa 178  Q
     || |||||||||||| ||||| ||||| |||||||||||  |||| |  ||||||||||||||| |||| |||||||||    
T  1834878 tggtaactaacgggtcccacgtttaaaa-aagtaataaaacgtgtactatttggtcccacttgcataaaggagtaataaa 1834956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 173 - 250
Target Start/End: Original strand, 23082429 - 23082506
Alignment:
Q  173 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgta 250  Q
    |||||||||||||| | ||||| |||||||||||||   |||||||||||||||| ||||||||||||||||||||||    
T  23082429 aataaattatttttgtttaatgttgtaaagttagtgaagtctatttaagtatttttcattggagtccttattagtgta 23082506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 5 - 176
Target Start/End: Original strand, 45370746 - 45370919
Alignment:
Q  5 caaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacggggaactatataagga-catg-ctctctcatggg 102  Q
    |||||| |||| ||| |||| ||| |||||||| |||||||||||||||||||| |||| | |||    |||| |||||||| |||  ||||||| | ||    
T  45370746 caaggatcactccccgttaaggactctccattggaggaagaaaaaatgagtctccattaaggaacatataactgtataaggatcatctctctctcctagg 45370845  T
Q  103 caactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaata 176  Q
    ||||||||||||| ||||| |||||||||||||||||| |||| |   | ||||||||| | ||||||||||||    
T  45370846 caactaacgggtcccacgtttaaaagaagtaataaaatttgtactatgttgtcccacttactaaagaagtaata 45370919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 175 - 264
Target Start/End: Original strand, 49650119 - 49650208
Alignment:
Q  175 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 264  Q
    |||||||||||| | ||||||||||||| ||||| ||  |||||||||| ||| ||||||||||||||||| |||||||| |||||||||    
T  49650119 taaattatttttgtttaatgatgtaaagatagtgagacatatttaagtacttttcattggagtccttattaatgtattgttattggagtc 49650208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 35719145 - 35718982
Alignment:
Q  1 ttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacggggaactatataaggac---atgctctctc 97  Q
    ||||||||||||||| ||| |||| ||| |||||||| |||||||||||||||||| |||||| | |||    ||||||||||||||   || |||||||    
T  35719145 ttaacaaggaccactccccgttaaggaccctccattggaggaagaaaaaatgagtcactattaaggaacatacaactatataaggaccctat-ctctctc 35719047  T
Q  98 atgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgca 164  Q
     |||| |||||||||||| ||||| ||||| |||||| ||||| |||| |  |||||||||||||||    
T  35719046 ctgggtaactaacgggtcccacgt-taaaa-aagtaacaaaatgtgtactacttggtcccacttgca 35718982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 173 - 264
Target Start/End: Original strand, 6597462 - 6597553
Alignment:
Q  173 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 264  Q
    ||||||| | |||| |||||||||||||||||||||  | |||||||| |||| | ||||||||||||| |||||||| |||||||||||||    
T  6597462 aataaatcacttttgtataatgatgtaaagttagtgtaacctatttaaatattattcattggagtccttgttagtgtactgtcattggagtc 6597553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 173 - 264
Target Start/End: Complemental strand, 27163145 - 27163054
Alignment:
Q  173 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 264  Q
    ||||||||| |||| |||||| ||||||||||||||  | ||||||||| ||||| ||||||||||  | ||||||||||||||||||||||    
T  27163145 aataaattacttttgtataattatgtaaagttagtgtcacctatttaagcatttttcattggagtctctgttagtgtattgtcattggagtc 27163054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 47677198 - 47677021
Alignment:
Q  1 ttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacggggaactatataaggacatgctctctcatg 100  Q
    |||||||||| |||| ||  ||||  || |||||||| ||||||||||||||||||| | ||| | |||||  ||||||||||||||   ||||||| ||    
T  47677198 ttaacaaggatcactccctgttaagaaccctccattggaggaagaaaaaatgagtctatgttaaggaacggtcaactatataaggactctctctctcttg 47677099  T
Q  101 ggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgca-aaagaagtaataaa 178  Q
    || ||||||||| || ||||| ||||| | |||||||||| |||| |  |||||| || ||||| ||||||||||||||    
T  47677098 ggtaactaacggatcccacgtttaaaa-aggtaataaaatgtgtactatttggtctcatttgcataaagaagtaataaa 47677021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 2 - 164
Target Start/End: Complemental strand, 26992080 - 26991921
Alignment:
Q  2 taacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacggggaactatataaggacatgctctctcatgg 101  Q
    |||||||||||| || || |||| ||| || |||||||||||||||||||||||| |  |||   ||| |  ||||||||||||||   ||||||| |||    
T  26992080 taacaaggaccattttccgttaaggacccttcattgaaggaagaaaaaatgagtcccggttaaagaacagacaactatataaggacc--ctctctcctgg 26991983  T
Q  102 gcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgca 164  Q
      |||||||||| | ||||| ||||| |||||||||||| ||||||  |||||||||||||||    
T  26991982 ataactaacgggcctcacgtttaaaa-aagtaataaaatgtgtattacttggtcccacttgca 26991921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 7 - 145
Target Start/End: Original strand, 30796562 - 30796701
Alignment:
Q  7 aggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacggggaactatataaggacatgctctc--tcatgggca 104  Q
    |||| |||||||| |||| ||| |||||||||| |||||||||||||||| |||||| | |||    |||||||||||||  | |||||  ||||| | |    
T  30796562 aggatcacttcccgttaaggaccctccattgaaagaagaaaaaatgagtccctattaaggaacaaacaactatataaggatcttctctctttcatgagta 30796661  T
Q  105 actaacgggtcacacgtgtaaaagaagtaataaaatatgta 145  Q
    ||||||||||| ||||| ||||| |||||||||||| ||||    
T  30796662 actaacgggtctcacgtttaaaa-aagtaataaaatgtgta 30796701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 200 - 264
Target Start/End: Original strand, 39092967 - 39093031
Alignment:
Q  200 aagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 264  Q
    ||||||||||||  |||||||||| |||  |||||||||||||||| ||||||||||||||||||    
T  39092967 aagttagtgggacatatttaagtacttttaattggagtccttattattgtattgtcattggagtc 39093031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 130 - 264
Target Start/End: Complemental strand, 35718975 - 35718836
Alignment:
Q  130 agtaataaaatatgtattggttggtcccacttgcaaaaga-agtaa----taaattatttttatataatgatgtaaagttagtgggatctatttaagtat 224  Q
    ||||||||||| |||| |  ||||||||||||| |||| | |||||    |||||||||||| | |||| | |||||| ||||| ||  ||||||||||     
T  35718975 agtaataaaatgtgtactacttggtcccacttgtaaaaaagagtaataagtaaattatttttgtttaataaagtaaagatagtgagacatatttaagtac 35718876  T
Q  225 tttccattggagtccttattagtgtattgtcattggagtc 264  Q
    ||| |||||| |||||| ||||||||||| ||||||||||    
T  35718875 ttttcattggggtccttgttagtgtattgccattggagtc 35718836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 172 - 238
Target Start/End: Complemental strand, 38790671 - 38790605
Alignment:
Q  172 taataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtc 238  Q
    |||||||||| |||| ||||||||||||||||||||| ||  |||||||| ||||| ||||||||||    
T  38790671 taataaattacttttgtataatgatgtaaagttagtgagacttatttaagcatttttcattggagtc 38790605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 12705504 - 12705325
Alignment:
Q  1 ttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacggggaactatataaggacatgctctctca-- 98  Q
    ||||||| ||||||| ||| |||| ||| |||||||| ||||||||||||| |||| |  ||| | |||  | ||||||||||| ||   |||||||       
T  12705504 ttaacaatgaccactccccgttaaggaccctccattggaggaagaaaaaataagtccccgttaaggaacaagcaactatataagaaccctctctctctct 12705405  T
Q  99 tgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgca-aaagaagtaataaa 178  Q
    ||||||||||| ||||| ||||| ||||| |||||||||||| |||| |  |||||| |||||||| |||| |||||||||    
T  12705404 tgggcaactaatgggtcccacgtttaaaa-aagtaataaaatgtgtactacttggtctcacttgcataaaggagtaataaa 12705325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 103 - 176
Target Start/End: Complemental strand, 27163246 - 27163173
Alignment:
Q  103 caactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaata 176  Q
    |||||||| |||| ||||| |||||||||||||||||||| ||   |||||| |||||| ||||||||||||||    
T  27163246 caactaacaggtctcacgtttaaaagaagtaataaaatatatacaagttggttccactttcaaaagaagtaata 27163173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 173 - 264
Target Start/End: Original strand, 2356231 - 2356323
Alignment:
Q  173 aataaattatttt-tatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 264  Q
    ||||||||||||| |||||||||||||||||| ||||| |||| ||||| || |||  |||||||||   |||| |||||||| |||||||||    
T  2356231 aataaattattttttatataatgatgtaaagtcagtggaatctttttaaatactttttattggagtctcaattaatgtattgttattggagtc 2356323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 106 - 176
Target Start/End: Complemental strand, 13004294 - 13004224
Alignment:
Q  106 ctaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaata 176  Q
    |||| ||||| ||||| ||||||||||||| ||||||||| |   ||||||||||| ||||||||||||||    
T  13004294 ctaatgggtcccacgtttaaaagaagtaatcaaatatgtactatatggtcccacttacaaaagaagtaata 13004224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 176
Target Start/End: Original strand, 39092820 - 39092922
Alignment:
Q  74 aactatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagta 173  Q
    |||||||||||| ||| || | || | |||||||||||| |  ||||| |||||||| ||||||||||| || | ||||||| ||||||||||  |||||    
T  39092820 aactatataagggcattctttttcctaggcaactaacggatttcacgtttaaaagaaataataaaatatatactagttggtctcacttgcaaacaaagta 39092919  T
Q  174 ata 176  Q
    |||    
T  39092920 ata 39092922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 103 - 176
Target Start/End: Complemental strand, 18898348 - 18898275
Alignment:
Q  103 caactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaata 176  Q
    ||||||||| ||| |||||  ||||||||||||||||||||||   |||| |||||||| ||||| ||||||||    
T  18898348 caactaacgagtctcacgttcaaaagaagtaataaaatatgtacaagttgatcccactttcaaaataagtaata 18898275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 213 - 250
Target Start/End: Original strand, 22767175 - 22767212
Alignment:
Q  213 ctatttaagtattttccattggagtccttattagtgta 250  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  22767175 ctatttaagtatttttcattggagtccttattagtgta 22767212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 176
Target Start/End: Original strand, 31437064 - 31437116
Alignment:
Q  124 aaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaata 176  Q
    |||| ||||||||||||||||||  |||||||| |||| ||||||||||||||    
T  31437064 aaaataagtaataaaatatgtataagttggtcctactttcaaaagaagtaata 31437116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 242
Target Start/End: Complemental strand, 37586547 - 37586495
Alignment:
Q  190 taatgatgtaaagttagtgggatctatttaagtattttccattggagtcctta 242  Q
    |||||||||||||||| || ||  |||||||||||||| ||||||||||||||    
T  37586547 taatgatgtaaagttaatgagaattatttaagtatttttcattggagtcctta 37586495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 30627446 - 30627391
Alignment:
Q  1 ttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtc 56  Q
    ||||||||||||||| ||| |||| ||| |||||||| || |||||||||||||||    
T  30627446 ttaacaaggaccactccccgttaaggaccctccattggagaaagaaaaaatgagtc 30627391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 117 - 176
Target Start/End: Original strand, 52898403 - 52898462
Alignment:
Q  117 cacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaata 176  Q
    ||||| ||||||||||||||||||||||||  ||||||| ||||| ||||| || |||||    
T  52898403 cacgtttaaaagaagtaataaaatatgtataagttggtcacactttcaaaataaataata 52898462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 175 - 233
Target Start/End: Complemental strand, 47675967 - 47675909
Alignment:
Q  175 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattg 233  Q
    ||||||| |||| | ||||||||||||| ||||||||  |||||||||||||| |||||    
T  47675967 taaattacttttgtttaatgatgtaaagatagtgggacatatttaagtatttttcattg 47675909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 252
Target Start/End: Original strand, 44343422 - 44343491
Alignment:
Q  183 ttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtatt 252  Q
    |||| ||||||| || ||||||| || ||  |||||||||||||| |||||||||||||| |||| ||||    
T  44343422 ttttgtataatgttgcaaagttaatgagacatatttaagtatttttcattggagtccttactagtatatt 44343491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 263
Target Start/End: Complemental strand, 50011680 - 50011647
Alignment:
Q  230 attggagtccttattagtgtattgtcattggagt 263  Q
    |||||||||||||||| |||||||||||||||||    
T  50011680 attggagtccttattattgtattgtcattggagt 50011647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 121; Significance: 7e-62; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 42 - 245
Target Start/End: Original strand, 19735503 - 19735706
Alignment:
Q  42 aagaaaaaatgagtctctattatgcaacggggaactatataagga-catgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaat 140  Q
    |||||||||||||||||||||| |||||  | ||||||||||||| ||| |||||||||||||||||||||||||  |||||||||||||||||||||||    
T  19735503 aagaaaaaatgagtctctattaagcaacatgcaactatataaggatcat-ctctctcatgggcaactaacgggtccgacgtgtaaaagaagtaataaaat 19735601  T
Q  141 atgtattggttggtcccacttgcaaaagaagtaataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtcct 240  Q
    ||||| ||||||||| |||||| ||||||||||||||||||||||| ||||||||| ||||||||||| || ||||||||||| |||  |||||| ||||    
T  19735602 atgtactggttggtctcacttgtaaaagaagtaataaattatttttgtataatgatataaagttagtgagacctatttaagtactttttattggattcct 19735701  T
Q  241 tatta 245  Q
    |||||    
T  19735702 tatta 19735706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 17503506 - 17503245
Alignment:
Q  1 ttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaa-tgagtctctattatgcaacggggaactatataaggacatgctctctcat 99  Q
    ||||||||||||||| ||| |||| ||   ||||||| |||||||||||| | ||||  ||||| |||||  | ||||||||||| ||   ||||||| |    
T  17503506 ttaacaaggaccactccccgttaaggattttccattggaggaagaaaaaaataagtccatattaagcaacaagcaactatataagaact--ctctctctt 17503409  T
Q  100 gggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaataaattatttttatataatgatgta 199  Q
    |  |||| |||||  | |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||    
T  17503408 gatcaac-aacggaccccacgtgtaaaagaagtaataaactatgtactggttggtcccacttgcaaaagaagtaataaattatttttgtataattatgta 17503310  T
Q  200 aagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 264  Q
    |||||| |||||  ||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  17503309 aagttactgggacttatttaagtattttttattggagtccttattagtgtattgtcattggagtc 17503245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 1 - 375
Target Start/End: Original strand, 17549708 - 17550080
Alignment:
Q  1 ttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaa-tgagtctctattatgcaacggggaactatataaggacatgctctctcat 99  Q
    ||||||||||||||| ||| |||| ||   ||||||| |||||||||||| | ||||  ||||| |||||  | ||||||||||| ||   ||||||| |    
T  17549708 ttaacaaggaccactccccgttaaggattttccattggaggaagaaaaaaataagtccatattaagcaacaagcaactatataagaact--ctctctctt 17549805  T
Q  100 gggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaataaattatttttatataatgatgta 199  Q
    |  |||| |||||  | |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||    
T  17549806 gatcaac-aacggaccccacgtgtaaaagaagtaataaactatgtactggttggtcccacttgcaaaagaagtaataaattatttttgtataattatgta 17549904  T
Q  200 aagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc---gagtctttaatagctactttcattnnnnnnnn 296  Q
    |||||| |||||  ||||||||||||||  |||||||||||||||||||||||||||||||||||   || || ||||||  || |||||||            
T  17549905 aagttactgggacttatttaagtattttttattggagtccttattagtgtattgtcattggagtcattgaatccttaatatgtaatttcattaaaaaa-- 17550002  T
Q  297 nttataaataagtgatgtttacatgtatggtccatttaagaagtctctattagtagactaccattatggatgctctaag 375  Q
     ||||||||||||||||| | || ||  |||||||||||||||||  ||||||| ||||  |||| |||||||| ||||    
T  17550003 -ttataaataagtgatgtgttcacgtggggtccatttaagaagtccttattagtggactgtcattctggatgctttaag 17550080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 144 - 238
Target Start/End: Complemental strand, 1964321 - 1964227
Alignment:
Q  144 tattggttggtcccacttgcaaaagaagtaataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtc 238  Q
    |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||  |||||||||    
T  1964321 tattggttggtcacacttgtaaaagaagtaataaattatttttatataatgatgtaaagttagtgggatctatttaaatactttttattggagtc 1964227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 583851 - 584013
Alignment:
Q  1 ttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacggggaactatataaggacatgctctctcatg 100  Q
    ||||||||||||| | ||| |||| ||| |||||||| |||||||||||||||||| |  ||| | |||||| ||||||||||||||   ||||||| ||    
T  583851 ttaacaaggaccaatccccgttaaggaccctccattggaggaagaaaaaatgagtcccccttaaggaacgggcaactatataaggaccctctctctcctg 583950  T
Q  101 ggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgca 164  Q
    || |||||||||||| ||||| ||||| ||||||||||||||||| |  |||||||||||||||    
T  583951 ggtaactaacgggtcccacgtttaaaa-aagtaataaaatatgtactacttggtcccacttgca 584013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 153 - 259
Target Start/End: Original strand, 8352633 - 8352738
Alignment:
Q  153 gtcccacttgcaaaagaagtaataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtatt 252  Q
    |||||| || ||||||||||||||| || ||||| | ||||||||||||||||||| ||  |||||||||||||| ||||| ||||||||||||||||||    
T  8352633 gtcccattttcaaaagaagtaataattttttttttt-taatgatgtaaagttagtgagacttatttaagtatttttcattgaagtccttattagtgtatt 8352731  T
Q  253 gtcattg 259  Q
    |||||||    
T  8352732 gtcattg 8352738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 175 - 264
Target Start/End: Original strand, 2842562 - 2842651
Alignment:
Q  175 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 264  Q
    |||||||||||| | |||||||||| || ||||||||  ||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  2842562 taaattatttttgtttaatgatgtacagatagtgggacatatttaaatatttttcattggagtccttattagtgtattgtcattggagtc 2842651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 125 - 372
Target Start/End: Complemental strand, 8515686 - 8515440
Alignment:
Q  125 aaagaagtaataaaatatgtattggttggtcccacttgcaaaa-gaagtaataaattatttttatataatgatgtaaagttagtgggatctatttaagta 223  Q
    |||| ||||||||||| ||||||  ||||||||||||| |||| | |||   ||||||||||| | |||||||||||||  |||||||  ||||||||||    
T  8515686 aaaggagtaataaaatgtgtattacttggtcccacttgtaaaaaggagtggaaaattatttttgtttaatgatgtaaagacagtgggacatatttaagta 8515587  T
Q  224 ttttccattggagtccttattagtgtattgtcattggagtc---gagtctttaatagctactttcattnnnnnnnnnttataaataagtgatgtttacat 320  Q
    ||||  ||| |||||||||||||||||||| ||||||||||   || || ||||||| |||||| |||         ||||||||||||||||| | ||     
T  8515586 ttttttattcgagtccttattagtgtattgccattggagtcattgaatccttaataggtacttttatt----aaaaattataaataagtgatgtgt-cac 8515492  T
Q  321 gtatggtccatttaagaagtctctattagtagactaccattatggatgctct 372  Q
    ||  |||||||||||||||||  ||||||   ||||||||| ||||||||||    
T  8515491 gtggggtccatttaagaagtccttattagagaactaccattgtggatgctct 8515440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 172 - 374
Target Start/End: Original strand, 1837760 - 1837961
Alignment:
Q  172 taataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc---gagt 268  Q
    |||||||||| |||| | |||||||| ||||||||||||   |||||||||| |||  ||| |||||||||||||||||||||||||||||||   ||||    
T  1837760 taataaattacttttgtttaatgatgcaaagttagtggggcatatttaagtactttttatttgagtccttattagtgtattgtcattggagtcattgagt 1837859  T
Q  269 ctttaatagctactttcattnnnnnnnnnttataaataagtgatgtttacatgtatggtccatttaagaagtctctattagtagactaccattatggatg 368  Q
    ||||||||  |||||| |||         |||||||||||||| || || | ||  |||||||||||| |||||||||||    ||||||||||||||||    
T  1837860 ctttaataagtacttttatt---aatatattataaataagtgacgtgta-acgtggggtccatttaaggagtctctattaaggaactaccattatggatg 1837955  T
Q  369 ctctaa 374  Q
    ||||||    
T  1837956 ctctaa 1837961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 176 - 264
Target Start/End: Complemental strand, 8488801 - 8488713
Alignment:
Q  176 aaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 264  Q
    ||||||||||| | ||||||||||||| ||||||||  ||||||||||||||  |||| ||||||||||||||||||| ||||||||||    
T  8488801 aaattatttttgtttaatgatgtaaagatagtgggacatatttaagtattttttattgaagtccttattagtgtattgccattggagtc 8488713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 173 - 276
Target Start/End: Complemental strand, 48294132 - 48294026
Alignment:
Q  173 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc---gagtc 269  Q
    |||||||||||||| | |||||||||||||||||||||| |||||||  || ||| |||||||||||||||||||||| |  ||||||||||   |||||    
T  48294132 aataaattatttttgtttaatgatgtaaagttagtgggacctatttagatactttacattggagtccttattagtgtacttccattggagtcaatgagtc 48294033  T
Q  270 tttaata 276  Q
    |||||||    
T  48294032 tttaata 48294026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 175 - 284
Target Start/End: Original strand, 584070 - 584182
Alignment:
Q  175 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc---gagtctt 271  Q
    |||||||||||| | ||||||||||||| ||||| ||  |||||||||| ||| |||||||||| || ||||||||||| ||||||||||   ||||| |    
T  584070 taaattatttttgtttaatgatgtaaagatagtgagacatatttaagtacttttcattggagtctttgttagtgtattgccattggagtcattgagtcct 584169  T
Q  272 taatagctacttt 284  Q
    |||||| ||||||    
T  584170 taatagatacttt 584182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 173 - 262
Target Start/End: Original strand, 25173480 - 25173569
Alignment:
Q  173 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggag 262  Q
    ||||||||| |||| |||||||||||||| |||||| || ||||||||||| ||| |||| |||||  | ||||||||||||||||||||    
T  25173480 aataaattacttttgtataatgatgtaaaattagtgagacctatttaagtacttttcatttgagtcactgttagtgtattgtcattggag 25173569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 175 - 264
Target Start/End: Original strand, 44592100 - 44592189
Alignment:
Q  175 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 264  Q
    ||||||||| || | ||||||||||||| || |||||  |||||||||| ||| |||| ||||||||||||||||||||| |||||||||    
T  44592100 taaattattgttgtttaatgatgtaaagataatgggacatatttaagtacttttcattagagtccttattagtgtattgttattggagtc 44592189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 173 - 264
Target Start/End: Original strand, 27399762 - 27399853
Alignment:
Q  173 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 264  Q
    ||||||||| ||||  |||||||||||||| |||||| | |||||||| || ||| ||||||||||  | ||||||||||||||||||||||    
T  27399762 aataaattacttttgcataatgatgtaaaggtagtggaacctatttaattacttttcattggagtcaatgttagtgtattgtcattggagtc 27399853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 176 - 264
Target Start/End: Complemental strand, 38974900 - 38974813
Alignment:
Q  176 aaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 264  Q
    ||||||||||| | ||||||||||| |||||||||  ||||||||||| ||| | || ||||||||||||||||| | |||||||||||    
T  38974900 aaattatttttgtttaatgatgtaa-gttagtggggcctatttaagtacttttctttagagtccttattagtgtactctcattggagtc 38974813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 173 - 251
Target Start/End: Original strand, 21294841 - 21294919
Alignment:
Q  173 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtat 251  Q
    |||||||||||| | | |||||||||||||||||| |||  ||||||| ||||||  ||||||||| ||||||||||||    
T  21294841 aataaattatttgtgtttaatgatgtaaagttagtaggacatatttaaatatttttaattggagtctttattagtgtat 21294919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 264
Target Start/End: Original strand, 48557962 - 48558050
Alignment:
Q  175 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 264  Q
    |||||||||||| |  |||||||||||| ||||| ||| |||||||||| ||| ||||||| || |||||| |||||| |||||||||||    
T  48557962 taaattatttttgttcaatgatgtaaagatagtgcgat-tatttaagtacttttcattggactcattattaatgtattctcattggagtc 48558050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 173 - 288
Target Start/End: Original strand, 48767846 - 48767964
Alignment:
Q  173 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc---gagtc 269  Q
    |||| |||| |||| ||||||||||||||||||||| ||  |||||||| | ||| ||||||||||| | || |||||||  ||||||||||   |||||    
T  48767846 aatatattacttttgtataatgatgtaaagttagtgagacatatttaagcacttttcattggagtccctgttggtgtattaccattggagtcattgagtc 48767945  T
Q  270 tttaatagctactttcatt 288  Q
     |||||||  |||||||||    
T  48767946 cttaataggaactttcatt 48767964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 173 - 264
Target Start/End: Complemental strand, 8055396 - 8055305
Alignment:
Q  173 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 264  Q
    ||||||||| |||||| ||||||||||||||||||| || ||||||||  | |||  ||   | ||||| ||||||||||||||||||||||    
T  8055396 aataaattacttttatgtaatgatgtaaagttagtgagacctatttaatcactttttatcatattccttgttagtgtattgtcattggagtc 8055305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 178
Target Start/End: Original strand, 2842359 - 2842520
Alignment:
Q  21 ttaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacggggaactatataaggacatgctctctca--tgggcaactaacgggtcaca 118  Q
    |||| ||| |||||||| | |||||||||||||||| || ||| | |||||  |||||||||||||  | |||||||   |  | || ||||||||| ||    
T  2842359 ttaaggaccctccattggaagaagaaaaaatgagtccctgttaaggaacggacaactatataaggatcttctctctctcctaagtaattaacgggtccca 2842458  T
Q  119 cgtgtaaaagaag-taataaaatatgtattggttggtcccacttgca-aaagaagtaataaa 178  Q
    ||| ||||| ||| |||||||||||||| |  ||||||||||||||| |||| |||||||||    
T  2842459 cgtttaaaaaaaggtaataaaatatgtactacttggtcccacttgcataaaggagtaataaa 2842520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 325 - 374
Target Start/End: Original strand, 19735787 - 19735836
Alignment:
Q  325 ggtccatttaagaagtctctattagtagactaccattatggatgctctaa 374  Q
    |||||||||||| ||||||||||||| |||||||||| ||||| ||||||    
T  19735787 ggtccatttaaggagtctctattagtggactaccattgtggatactctaa 19735836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 175 - 242
Target Start/End: Original strand, 43786686 - 43786753
Alignment:
Q  175 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtcctta 242  Q
    |||||||||||| | ||||||||||||| ||||| ||  |||||||||| ||| | ||||||||||||    
T  43786686 taaattatttttgtttaatgatgtaaagatagtgagacatatttaagtacttttctttggagtcctta 43786753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 48557743 - 48557798
Alignment:
Q  1 ttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtc 56  Q
    |||||||||| |||| |||||||| ||| || ||||| ||||||||||||||||||    
T  48557743 ttaacaaggatcactccccattaaggacccttcattggaggaagaaaaaatgagtc 48557798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 8515841 - 8515787
Alignment:
Q  1 ttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagt 55  Q
    ||||||||||| ||| ||| |||| ||| |||||||| |||||||||||||||||    
T  8515841 ttaacaaggactactccccgttaaggactctccattggaggaagaaaaaatgagt 8515787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 123 - 173
Target Start/End: Original strand, 48767475 - 48767525
Alignment:
Q  123 taaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagta 173  Q
    |||||||||||||||||||||||   ||||||||||||| | |||||||||    
T  48767475 taaaagaagtaataaaatatgtacaagttggtcccactttcgaaagaagta 48767525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 250
Target Start/End: Original strand, 3641570 - 3641647
Alignment:
Q  173 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgta 250  Q
    |||||||||||||| | ||||| | ||| ||||||||| | |||||||||| |||  |||| |||| |||||||||||    
T  3641570 aataaattatttttgtttaatgctataatgttagtggggtttatttaagtacttttaattgaagtctttattagtgta 3641647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 375
Target Start/End: Complemental strand, 17503211 - 17503134
Alignment:
Q  298 ttataaataagtgatgtttacatgtatggtccatttaagaagtctctattagtagactaccattatggatgctctaag 375  Q
    ||||||||||||||||| | || ||  |||||||||||||||||  ||||||| ||||  |||| |||||||| ||||    
T  17503211 ttataaataagtgatgtgttcacgtggggtccatttaagaagtccttattagtggactgtcattctggatgctttaag 17503134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 103 - 167
Target Start/End: Original strand, 27399428 - 27399492
Alignment:
Q  103 caactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaa 167  Q
    ||||||||  ||||| ||| ||||||||||||||||| || ||||  ||||||| ||||||||||    
T  27399428 caactaacaagtcacgcgtttaaaagaagtaataaaagatatattaattggtcctacttgcaaaa 27399492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 145
Target Start/End: Original strand, 36452258 - 36452330
Alignment:
Q  74 aactatataaggac-atgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgta 145  Q
    |||||||||||||| ||  |||||||| |  |||||||||  | ||||||||||||||| |||||||||||||    
T  36452258 aactatataaggaccattttctctcattgataactaacggaccccacgtgtaaaagaagcaataaaatatgta 36452330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 117; Significance: 2e-59; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 45 - 264
Target Start/End: Complemental strand, 29465515 - 29465298
Alignment:
Q  45 aaaaaatgagtctctattatgcaacggggaactatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgt 144  Q
    ||||||||||||||| ||| |||||| | ||||||||||||||   ||||||||||||||||||||||| | |||||||||||||||| |||||||||||    
T  29465515 aaaaaatgagtctctgttaagcaacgagcaactatataaggact--ctctctcatgggcaactaacgggcctcacgtgtaaaagaagtgataaaatatgt 29465418  T
Q  145 attggttggtcccacttgcaaaagaagtaataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttatt 244  Q
    | |||||||||  |||| |||||||| ||||||| || |||| |||||||||||||| |||||| |||||||||||| ||||| |||||||||| |||||    
T  29465417 actggttggtctaacttacaaaagaaataataaactaattttgtataatgatgtaaacttagtgagatctatttaagaatttttcattggagtcattatt 29465318  T
Q  245 agtgtattgtcattggagtc 264  Q
    |||| ||||||||| |||||    
T  29465317 agtgaattgtcatttgagtc 29465298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 107 - 372
Target Start/End: Complemental strand, 27753267 - 27753002
Alignment:
Q  107 taacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaataaattatttttatataatgatgtaaagttag 206  Q
    |||||| || ||||| ||||||||||||||||||||||| |  ||| || ||||||||||||||||||||||||| |||| | ||||| |||||||||||    
T  27753267 taacggatctcacgtttaaaagaagtaataaaatatgtactatttgatctcacttgcaaaagaagtaataaattagttttgtttaatgttgtaaagttag 27753168  T
Q  207 tgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc---gagtctttaatagctactttcattnnnnnnnnnttataa 303  Q
    |||||  |||||||||| ||| |||| |||||||||||||||||||| |||| |||||   || || ||||||| |||||| |||         ||||||    
T  27753167 tgggacttatttaagtacttttcatttgagtccttattagtgtattgacatttgagtcattgaatccttaataggtacttttatt---aaaaaattataa 27753071  T
Q  304 ataagtgatgtttacatgtatggtccatttaagaagtctctattagtagactaccattatggatgctct 372  Q
    ||||||||| | |||||||  | || ||||||| |||||||||||||||||||||| |||| |||||||    
T  27753070 ataagtgatatgtacatgtgagatctatttaaggagtctctattagtagactaccactatgaatgctct 27753002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 33 - 264
Target Start/End: Complemental strand, 31766652 - 31766425
Alignment:
Q  33 cattgaaggaagaaaaaatgagtctctattatgcaacggggaactatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagt 132  Q
    |||| ||| ||||||||||||||| | |||| |||||    |||||||||||||  | |||||||||||| ||| |||||||  || |||||||||||||    
T  31766652 cattaaagaaagaaaaaatgagtc-caattaagcaacaaacaactatataagga--ttctctctcatgggaaaccaacgggttccatgtgtaaaagaagt 31766556  T
Q  133 aataaaatatgtattggttggtcccacttgcaaaagaagtaataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccatt 232  Q
    |||||||||||||  |||| ||| ||||| ||||| |||| |||||| |||||| |||||| ||||||||||||||||||||||||||||| | |  |||    
T  31766555 aataaaatatgtacgggttagtctcacttacaaaataagttataaataatttttgtataataatgtaaagttagtgggatctatttaagtactctttatt 31766456  T
Q  233 ggagtccttattagtgtattgtcattggagtc 264  Q
    ||||| |||||||||||||||||||| |||||    
T  31766455 ggagt-cttattagtgtattgtcatttgagtc 31766425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 173 - 264
Target Start/End: Original strand, 6812053 - 6812144
Alignment:
Q  173 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 264  Q
    |||||||||||||| |||||||||||||||||||||| | ||||||||||| ||| |||||||||| |||||||||||||| ||||||||||    
T  6812053 aataaattatttttgtataatgatgtaaagttagtggaacctatttaagtacttttcattggagtctttattagtgtattgccattggagtc 6812144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 6811311 - 6811486
Alignment:
Q  1 ttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacggggaactatataaggacatgctctctcatg 100  Q
    ||||||| ||||||| ||  |||| ||| ||||||||||||||||||||||||||| ||||||  ||||    ||||||||||||||    |||||| ||    
T  6811311 ttaacaaagaccactccctgttaaggaccctccattgaaggaagaaaaaatgagtccctattagacaacatacaactatataaggaccctttctctcttg 6811410  T
Q  101 ggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaata 176  Q
    | ||||||||||||  || || ||||||||  ||||||||||||||| ||| || ||||||| |||| ||||||||    
T  6811411 gacaactaacgggtatcatgtttaaaagaaaaaataaaatatgtattagtttgttccacttgtaaaataagtaata 6811486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 172 - 264
Target Start/End: Original strand, 12919069 - 12919161
Alignment:
Q  172 taataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 264  Q
    ||||||||||||||| | |||| | | ||||||||||||   |||||||||||||| |||| || ||||||||||||||||| ||||||||||    
T  12919069 taataaattatttttgtttaataaggcaaagttagtggggcatatttaagtatttttcatttgaatccttattagtgtattgccattggagtc 12919161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 213 - 264
Target Start/End: Complemental strand, 17096074 - 17096023
Alignment:
Q  213 ctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 264  Q
    ||||||||||| ||| ||||| ||||||||||||||||||||||||||||||    
T  17096074 ctatttaagtacttttcattgaagtccttattagtgtattgtcattggagtc 17096023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 102 - 176
Target Start/End: Complemental strand, 10373949 - 10373875
Alignment:
Q  102 gcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaata 176  Q
    |||||||| | ||||||||| |||||||||||||||||||||||   ||||||| ||||| |||||||| |||||    
T  10373949 gcaactaatgtgtcacacgtttaaaagaagtaataaaatatgtacatgttggtctcactttcaaaagaaataata 10373875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 91 - 176
Target Start/End: Original strand, 28188005 - 28188089
Alignment:
Q  91 ctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaata 176  Q
    ||||||| || |||||||||||||| || |  |||||||||||||||||||||||   ||||||  ||||| ||||||||||||||    
T  28188005 ctctctcttgagcaactaacgggtctcatgcttaaaagaagtaataaaatatgtacaagttggt-tcactttcaaaagaagtaata 28188089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 175 - 238
Target Start/End: Original strand, 19687610 - 19687673
Alignment:
Q  175 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtc 238  Q
    |||||||||||| | ||||||||||||| || |||||  |||||||||| ||| ||||||||||    
T  19687610 taaattatttttgtttaatgatgtaaagatactgggacatatttaagtacttttcattggagtc 19687673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 176
Target Start/End: Original strand, 24326049 - 24326134
Alignment:
Q  91 ctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaata 176  Q
    ||||||| | || ||||||||| || ||| | |||||||||||||||||||||||||   || |||||| | |||||||| |||||    
T  24326049 ctctctcctaggtaactaacggatcccacatttaaaagaagtaataaaatatgtattatatgatcccacgtacaaaagaaataata 24326134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 350
Target Start/End: Original strand, 6812177 - 6812229
Alignment:
Q  298 ttataaataagtgatgtttacatgtatggtccatttaagaagtctctattagt 350  Q
    |||||||||| |||| | ||||||| |||||||||||||||  ||||||||||    
T  6812177 ttataaataaatgatatgtacatgtgtggtccatttaagaaacctctattagt 6812229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 104; Significance: 1e-51; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 101 - 264
Target Start/End: Complemental strand, 25750042 - 25749880
Alignment:
Q  101 ggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaataaattatttttatataatgatgtaa 200  Q
    |||||||||||| || ||||||| ||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||| ||||||    
T  25750042 ggcaactaacggatcccacgtgtcaaaaaagtaataaaatatgtactggttggtcccacttgcaaaataagtaataaattatttttgtataataatgtaa 25749943  T
Q  201 agttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 264  Q
    |||||||||||  |||||||||||||| || |||||| ||||||||||||||| ||||||||||    
T  25749942 agttagtgggacatatttaagtatttttca-tggagttcttattagtgtattgccattggagtc 25749880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 105 - 264
Target Start/End: Complemental strand, 42029742 - 42029584
Alignment:
Q  105 actaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaataaattatttttatataatgatgtaaagtt 204  Q
    |||||||||||| || | |||||||||||||||||||||||||  |||||| |||||  ||||||| |||||| |||||||| | |||||||||||||||    
T  42029742 actaacgggtcatacatttaaaagaagtaataaaatatgtattatttggtctcacttataaaagaaataataa-ttatttttgtttaatgatgtaaagtt 42029644  T
Q  205 agtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 264  Q
    ||| |||| |||||||||||||| ||||| |||| |||||||||||||||||||||||||    
T  42029643 agttggatttatttaagtatttttcattgaagtctttattagtgtattgtcattggagtc 42029584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 21 - 176
Target Start/End: Complemental strand, 21848731 - 21848576
Alignment:
Q  21 ttaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacggggaactatataaggacatgctctctcatgggcaactaacgggtcacacg 120  Q
    |||| ||| |||||||| |||||||||||| ||||| |||||| |||||    ||||||||||||||||  |||||| |||||||||||| |||  ||||    
T  21848731 ttaaggaccctccattggaggaagaaaaaacgagtccctattaagcaacaaacaactatataaggacattatctctcctgggcaactaacaggttccacg 21848632  T
Q  121 tgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaata 176  Q
    | |||| |||||||||||||||||||| ||| ||||||||||||||| ||||||||    
T  21848631 tttaaatgaagtaataaaatatgtattagtttgtcccacttgcaaaaaaagtaata 21848576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 37847227 - 37847402
Alignment:
Q  1 ttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacggggaactatataaggacatgctctctcatg 100  Q
    ||||||||||||||| ||| ||||  ||   |||||| |||||||||||||||||  | |||| | |||||| |||||||||||||||| ||||||| |     
T  37847227 ttaacaaggaccactccccgttaagaacctcccattggaggaagaaaaaatgagttcccattaaggaacgggtaactatataaggacattctctctctta 37847326  T
Q  101 ggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaata 176  Q
    || |||||||||||  ||||| ||||||||||||||||||||||| |   ||||||||||| ||||||||||||||    
T  37847327 ggaaactaacgggttccacgtttaaaagaagtaataaaatatgtactatgtggtcccacttacaaaagaagtaata 37847402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 121 - 205
Target Start/End: Original strand, 27957498 - 27957582
Alignment:
Q  121 tgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaataaattatttttatataatgatgtaaagtta 205  Q
    |||||||||||||||||||||| || ||||| |||||| ||||||||||| ||||||||||||||| || |||||||||||||||    
T  27957498 tgtaaaagaagtaataaaatatatactggttagtcccaattgcaaaagaaataataaattatttttgtaaaatgatgtaaagtta 27957582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 173 - 264
Target Start/End: Complemental strand, 21848319 - 21848228
Alignment:
Q  173 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 264  Q
    |||||||||||||| ||||||||| |||||||||||||| ||||||||||| |||  ||||||||| | ||||||||||| |||||||||||    
T  21848319 aataaattatttttgtataatgatataaagttagtgggacctatttaagtactttttattggagtcttgattagtgtattttcattggagtc 21848228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 32 - 181
Target Start/End: Original strand, 39446159 - 39446308
Alignment:
Q  32 ccattgaaggaagaaaaaatgagtctctattatgcaacggggaactatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaag 131  Q
    |||||| |||||||||||| ||||| |||||| |||||    |||||||||||||     |||||| |  ||||| |||| ||| | ||| |||||||||    
T  39446159 ccattggaggaagaaaaaacgagtccctattaagcaacaaacaactatataaggattatttctctcctaagcaacaaacgagtctcgcgtctaaaagaag 39446258  T
Q  132 taataaaatatgtattggttggtcccacttgcaaaagaagtaataaatta 181  Q
    |||||||||||||||| |||| ||||||||||||||||||||||| ||||    
T  39446259 taataaaatatgtattagttgatcccacttgcaaaagaagtaatatatta 39446308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 172 - 264
Target Start/End: Original strand, 37456044 - 37456136
Alignment:
Q  172 taataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 264  Q
    ||||||||||||||| | |||| ||| ||||||||||||   |||||||||||||| |||| || ||||||||||||||||| ||||||||||    
T  37456044 taataaattatttttgtttaataatgcaaagttagtggggcatatttaagtatttttcatttgaatccttattagtgtattgccattggagtc 37456136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 190 - 250
Target Start/End: Original strand, 44059281 - 44059341
Alignment:
Q  190 taatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgta 250  Q
    |||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  44059281 taatgacgtaaagttagtgggatctatttaagtacttttcattggagtccttattagtgta 44059341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 173 - 250
Target Start/End: Complemental strand, 2968946 - 2968869
Alignment:
Q  173 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgta 250  Q
    |||||||||||||| | ||||||||||||||||||||   ||||||||||| ||| | ||||||||||||||||||||    
T  2968946 aataaattatttttgtttaatgatgtaaagttagtggagcctatttaagtacttttcgttggagtccttattagtgta 2968869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 175 - 263
Target Start/End: Original strand, 10624826 - 10624914
Alignment:
Q  175 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagt 263  Q
    |||||||||||| | |||| |||||||| ||||||||| |||||||||| |||  |||||||| ||||||||| |||| ||||||||||    
T  10624826 taaattatttttgtttaataatgtaaagatagtgggatatatttaagtacttttaattggagttcttattagtatattctcattggagt 10624914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 172 - 264
Target Start/End: Original strand, 27559033 - 27559125
Alignment:
Q  172 taataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 264  Q
    ||||||||||||||| | |||| ||| ||||||||||||   |||||||||||||| |||| || ||||||||| ||||||| ||||||||||    
T  27559033 taataaattatttttgtttaataatgcaaagttagtggggcatatttaagtatttttcatttgaatccttattaatgtattgccattggagtc 27559125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 91 - 264
Target Start/End: Complemental strand, 28967776 - 28967600
Alignment:
Q  91 ctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaaga-agtaata----aattatttt 185  Q
    ||||||| | || |||||||||||| ||||| |||||  ||||||||||| | || |  ||||||||||||| ||||   |||||||    |||||||||    
T  28967776 ctctctcttaggtaactaacgggtcccacgtttaaaa--agtaataaaatgtatactacttggtcccacttgtaaaaatgagtaatatgtaaattatttt 28967679  T
Q  186 tatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 264  Q
    | | ||||||||||||| || ||| |  |||||||||| ||| |||||||||| |||||| | ||||||||||||||||    
T  28967678 tgtttaatgatgtaaagataatggaacatatttaagtacttttcattggagtcattattactttattgtcattggagtc 28967600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 173 - 249
Target Start/End: Original strand, 37847690 - 37847766
Alignment:
Q  173 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgt 249  Q
    |||||||||||||| | ||| |||||||||| |||| |  ||||||||||||||| |||| ||||||||||||||||    
T  37847690 aataaattatttttgtttaaagatgtaaagtaagtgtggcctatttaagtatttttcattagagtccttattagtgt 37847766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 173 - 252
Target Start/End: Complemental strand, 3703580 - 3703501
Alignment:
Q  173 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtatt 252  Q
    |||||||||||||| | |||||||||||||||||||||| |||| |||||| |||  |||| | ||||||||| ||||||    
T  3703580 aataaattatttttgtttaatgatgtaaagttagtgggacctatataagtactttttattgtaatccttattaatgtatt 3703501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 173 - 264
Target Start/End: Original strand, 12671787 - 12671878
Alignment:
Q  173 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 264  Q
    ||||||| | |||| |||||| ||||||||||||| |||   |||||| |||||| ||||||||||  |||||||||||||||||| |||||    
T  12671787 aataaatgacttttgtataataatgtaaagttagtaggactcatttaaatatttttcattggagtctgtattagtgtattgtcatttgagtc 12671878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 175 - 245
Target Start/End: Complemental strand, 12863671 - 12863601
Alignment:
Q  175 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttatta 245  Q
    |||||||||||| | ||| ||| ||||||||||||| |||||||||||||||| |||||  ||||||||||    
T  12863671 taaattatttttgtttaacgatataaagttagtggggtctatttaagtatttttcattgatgtccttatta 12863601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 200 - 288
Target Start/End: Complemental strand, 11916247 - 11916161
Alignment:
Q  200 aagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtcgagtctttaatagctactttcatt 288  Q
    ||||||||| || |||||||||||||||  ||| ||||| |||||||||||||| |||| |||||  ||| ||||||| ||||||||||    
T  11916247 aagttagtgtgagctatttaagtatttttaatttgagtctttattagtgtattgacattagagtc--gtccttaataggtactttcatt 11916161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 264
Target Start/End: Original strand, 12184735 - 12184823
Alignment:
Q  175 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 264  Q
    |||||||| ||| | ||||||||||||| ||||||||  |||||||||| ||| ||||| | |  |||||||||||||||||||||||||    
T  12184735 taaattatatttgtttaatgatgtaaagatagtgggacatatttaagtacttttcattgaaat-tttattagtgtattgtcattggagtc 12184823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 91 - 176
Target Start/End: Original strand, 19140982 - 19141067
Alignment:
Q  91 ctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaata 176  Q
    ||||||| || ||||||||| |||| || || ||||||||||| ||| ||||||||  |||||||||| || ||||||||||||||    
T  19140982 ctctctcctgagcaactaacaggtctcatgtttaaaagaagtattaagatatgtataagttggtcccattttcaaaagaagtaata 19141067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 92 - 176
Target Start/End: Complemental strand, 2969282 - 2969198
Alignment:
Q  92 tctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaata 176  Q
    |||||| | ||||||||| ||||| ||||| ||||||||||||||||||||||| |   || || ||||| ||||||||||||||    
T  2969282 tctctcctaggcaactaatgggtcccacgtttaaaagaagtaataaaatatgtaatatgtgatctcacttacaaaagaagtaata 2969198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 94 - 176
Target Start/End: Original strand, 12671677 - 12671759
Alignment:
Q  94 tctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaata 176  Q
    ||||||| |||||||||||| |  |||| ||||||||||| ||||||||||||  | | |||||||||  |||||||||||||    
T  12671677 tctcatgagcaactaacgggacctacgtttaaaagaagtattaaaatatgtataaggttgtcccacttttaaaagaagtaata 12671759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 30 - 176
Target Start/End: Complemental strand, 11916429 - 11916292
Alignment:
Q  30 ctccattgaaggaagaaaaaatgagtctctattatgcaacggggaactatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaaga 129  Q
    |||||||| |||||| ||||||||||   ||||| |||||| | || ||||||||||  | ||||||| | ||||| ||| | ||||||||| |||||||    
T  11916429 ctccattggaggaagtaaaaatgagtacatattaagcaacgagcaaatatataagga--ttctctctcctaggcaattaatgagtcacacgtttaaaaga 11916332  T
Q  130 agtaataaaatatgtattggttggtcccacttgcaaaagaagtaata 176  Q
    |||||||       || | |||||||| |||||||||||||||||||    
T  11916331 agtaata-------tactagttggtccaacttgcaaaagaagtaata 11916292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 104 - 180
Target Start/End: Original strand, 12184619 - 12184695
Alignment:
Q  104 aactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgca-aaagaagtaataaatt 180  Q
    ||||||||||||||| || ||||| ||||||||||||||||| |  |||||| |||||||| |||| |||||||||||    
T  12184619 aactaacgggtcacatgtttaaaa-aagtaataaaatatgtactacttggtctcacttgcataaaggagtaataaatt 12184695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 200 - 375
Target Start/End: Original strand, 39446348 - 39446521
Alignment:
Q  200 aagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc---gagtctttaatagctactttcattnnnnnnnn 296  Q
    |||||||||| |  |||||||||| |||  |||||||||||||  ||||||||||||||||||||   ||||| ||||||  || |||||||            
T  39446348 aagttagtggaacatatttaagtacttttaattggagtcctta--agtgtattgtcattggagtcattgagtccttaataagtattttcatt---aaaaa 39446442  T
Q  297 nttataaataagtgatgtttacatgtatggtccatttaagaagtctctattagtagactaccattatggatgctctaag 375  Q
     ||||||||||||||||| |||| || | ||||||||||| ||||  ||||| |  ||||||||  |||||||||||||    
T  39446443 attataaataagtgatgtgtacacgtgtagtccatttaagtagtccatattactgtactaccatcgtggatgctctaag 39446521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 138
Target Start/End: Original strand, 12016184 - 12016248
Alignment:
Q  74 aactatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaa 138  Q
    |||||||||||||| | |||||||  | |||||||||||||| ||||| |||||||| |||||||    
T  12016184 aactatataaggaccttctctctcccgagcaactaacgggtctcacgtttaaaagaaataataaa 12016248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 28967892 - 28967837
Alignment:
Q  1 ttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtc 56  Q
    ||||||||||||||||||| |||| ||| ||| |||  ||||||||||||||||||    
T  28967892 ttaacaaggaccacttcccgttaaggaccctctattagaggaagaaaaaatgagtc 28967837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 3704044 - 3703897
Alignment:
Q  1 ttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaat---gagtctctattatgcaacggggaactatataaggacatgctctctc 97  Q
    |||| |||||||||| || ||||| ||  ||| |||| || ||||||||||   ||||| | |||||| |||| | |||||||||||||    || ||||    
T  3704044 ttaataaggaccactccctattaaggatcctctattggagaaagaaaaaattatgagtccccattatggaacgagtaactatataaggatcctctatctc 3703945  T
Q  98 atgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgta 145  Q
     | ||  ||||| ||||| ||||| |||||||||||||||||||||||    
T  3703944 ctaggttactaatgggtctcacgtttaaaagaagtaataaaatatgta 3703897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 100; Significance: 2e-49; HSPs: 39)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 56397354 - 56397091
Alignment:
Q  1 ttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacggggaactatataaggacatgctctctcatg 100  Q
    |||||||||| |||||||| |||| ||| || ||||| || |  ||||||||||||| || || ||||  |   ||||||||||||  | |||| ||||     
T  56397354 ttaacaaggatcacttcccgttaaagacccttcattggagaagaaaaaaatgagtctttactaagcaatagacgactatataaggattttctctttcata 56397255  T
Q  101 ggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaataaattatttttatataatgatgtaa 200  Q
    ||||||||||||||||||| |||||||||| |||||||||||| | | |||| ||| ||||| ||||||||| ||||||||||||| |||||||||||||    
T  56397254 ggcaactaacgggtcacacatgtaaaagaaataataaaatatgcagtagttgatccgacttgtaaaagaagttataaattatttttgtataatgatgtaa 56397155  T
Q  201 agttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 264  Q
    ||||| ||  |  |||||||||||||| ||||| |||||||||| | |||||||||||||||||    
T  56397154 agttaatgacacatatttaagtatttttcattgaagtccttattcgcgtattgtcattggagtc 56397091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 47 - 264
Target Start/End: Original strand, 37450695 - 37450915
Alignment:
Q  47 aaaatgagtctctattatgcaacggggaactatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtat 146  Q
    ||||||||||||||||| |||||| | ||||||||||||||   | ||||  | ||||||||||||  | ||||||||||||||||||||||||||||||    
T  37450695 aaaatgagtctctattaagcaacgagcaactatataaggaccctccctcttctaggcaactaacggaccccacgtgtaaaagaagtaataaaatatgtat 37450794  T
Q  147 tggttggtcccacttgcaaaagaagtaataaattatttttatataatgatgtaaagttagtgggatctatttaagtat----tttccattggagtcctta 242  Q
    |||||| |||||||||||||||||||||||||||||||||   |||||||||||| ||||||| | ||||||||||||    |||  |||| |||| | |    
T  37450795 tggttgatcccacttgcaaaagaagtaataaattatttttgggtaatgatgtaaaattagtgg-acctatttaagtatattttttttattgaagtcatca 37450893  T
Q  243 ttagtgtattgtcattggagtc 264  Q
    ||||| ||||||||||||||||    
T  37450894 ttagtatattgtcattggagtc 37450915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 51175307 - 51175469
Alignment:
Q  1 ttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacggggaactatataaggacatgctctctcatg 100  Q
    ||||||||||||||| ||| |||| ||| |||||||| |||||||||||||||||| |  ||| | |||||| ||||||||||||||   ||||||||||    
T  51175307 ttaacaaggaccactccccgttaaggaccctccattggaggaagaaaaaatgagtccccgttaaggaacgggcaactatataaggaccctctctctcatg 51175406  T
Q  101 ggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgca 164  Q
    || |||||||||||| ||||| ||||| || ||||||||| |||| |  |||||||||||||||    
T  51175407 ggtaactaacgggtcccacgtttaaaa-aattaataaaatgtgtactacttggtcccacttgca 51175469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 125 - 284
Target Start/End: Complemental strand, 44991911 - 44991744
Alignment:
Q  125 aaagaagtaataaaatatgtattggttggtcccacttg-caaaagaagtaa----taaattatttttatataatgatgtaaagttagtgggatctattta 219  Q
    |||| ||||||||||| |||| |  |||||||||||||  ||||| |||||    |||||||||||| | ||||||||||||| ||||||||  ||||||    
T  44991911 aaaggagtaataaaatgtgtactacttggtcccacttgtaaaaaggagtaataggtaaattatttttgtttaatgatgtaaagatagtgggacatattta 44991812  T
Q  220 agtattttccattggagtccttattagtgtattgtcattggagtc---gagtctttaatagctacttt 284  Q
    |||||||| ||||||||||||||||||||||||| ||||||||||   ||||| ||||||| ||||||    
T  44991811 agtatttttcattggagtccttattagtgtattgccattggagtcattgagtccttaataggtacttt 44991744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 172 - 374
Target Start/End: Complemental strand, 13678715 - 13678514
Alignment:
Q  172 taataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc---gagt 268  Q
    ||||||||||||||| | |||||||| ||||||||||||   |||||||||| ||| |||| |||||||||||||||||||||||||||||||   ||||    
T  13678715 taataaattatttttgtttaatgatgcaaagttagtggggcatatttaagtacttttcatttgagtccttattagtgtattgtcattggagtcattgagt 13678616  T
Q  269 ctttaatagctactttcattnnnnnnnnnttataaataagtgatgtttacatgtatggtccatttaagaagtctctattagtagactaccattatggatg 368  Q
    ||||||||  |||||| |||         |||||||||||||| || || | ||  |||||||||||| |||||||||||    ||||||||||||||||    
T  13678615 ctttaataagtacttttatt---aatatattataaataagtgacgtgta-acgtggggtccatttaaggagtctctattaaggaactaccattatggatg 13678520  T
Q  369 ctctaa 374  Q
    ||||||    
T  13678519 ctctaa 13678514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 175 - 264
Target Start/End: Original strand, 12191524 - 12191613
Alignment:
Q  175 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 264  Q
    |||||||||||| | ||||||||||||| ||||| ||  |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  12191524 taaattatttttgtttaatgatgtaaagatagtgagacatatttaagtatttttcattggagtccttattagtgtattgtcattggagtc 12191613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 31768093 - 31767838
Alignment:
Q  1 ttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacggggaactatataaggacatgctctctcatg 100  Q
    ||||||||||||||| ||| |||| ||| ||||||||||||||||||||||||||| |  ||| | | || | ||||||||||| ||   ||||||| ||    
T  31768093 ttaacaaggaccactccccgttaaggaccctccattgaaggaagaaaaaatgagtcaccgttaaggatcgagcaactatataagaactctctctctcctg 31767994  T
Q  101 ggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttg-caaaagaagtaa----taaattatttttatataatga 195  Q
    || |||||||||||| ||||| ||||| |||||||||||| |||| |  || ||||||||||  ||||  |||||    |||||||||||| | |||| |    
T  31767993 ggtaactaacgggtcccacgtttaaaa-aagtaataaaatgtgtactacttagtcccacttgtaaaaatgagtaataggtaaattatttttgtttaatca 31767895  T
Q  196 tgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattg 259  Q
    ||||||  |||       |||||||||| ||| ||||||||||| |||||||||||||||||||    
T  31767894 tgtaaatatag-------tatttaagtacttttcattggagtccatattagtgtattgtcattg 31767838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 173 - 262
Target Start/End: Original strand, 38068088 - 38068177
Alignment:
Q  173 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggag 262  Q
    |||||||||||||| | |||||||||||||||||||||  ||||||||||| |||  ||||||||||||||||||||| | |||||||||    
T  38068088 aataaattatttttgtttaatgatgtaaagttagtggggcctatttaagtactttttattggagtccttattagtgtactctcattggag 38068177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 175 - 284
Target Start/End: Original strand, 51175526 - 51175638
Alignment:
Q  175 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc---gagtctt 271  Q
    |||||||||||  | ||||||||||||| ||||||||  ||||||||||||||  |||||||||||||||| ||||||| ||||||||||   ||||| |    
T  51175526 taaattattttcgtttaatgatgtaaagatagtgggacatatttaagtattttgaattggagtccttattaatgtattgccattggagtcattgagtcct 51175625  T
Q  272 taatagctacttt 284  Q
    |||||| ||||||    
T  51175626 taataggtacttt 51175638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 173 - 250
Target Start/End: Original strand, 36904174 - 36904251
Alignment:
Q  173 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgta 250  Q
    |||||||||||||| | ||||||||||||||||||||   ||||||||||||||| || |||||||||||||||||||    
T  36904174 aataaattatttttgtttaatgatgtaaagttagtggagcctatttaagtatttttcactggagtccttattagtgta 36904251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 172 - 264
Target Start/End: Complemental strand, 5744896 - 5744804
Alignment:
Q  172 taataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 264  Q
    ||||||||||||||| | |||| ||| ||||||||||||   |||||||||||||| |||| || ||||||||||||||||| ||||||||||    
T  5744896 taataaattatttttgtttaataatgcaaagttagtggggcatatttaagtatttttcatttgaatccttattagtgtattgccattggagtc 5744804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 45832395 - 45832132
Alignment:
Q  1 ttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacggggaactatataaggacatgctctctcatg 100  Q
    ||||||||||||||| ||  |||| ||| |||||||| ||||||||||||| |||| |  |||   ||| |  |||||||||| |||   ||||||| ||    
T  45832395 ttaacaaggaccactcccagttaaggaccctccattggaggaagaaaaaataagtcaccgttaaagaacagacaactatataaagaccctctctctcctg 45832296  T
Q  101 ggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaa-gaagtaataa----attatttttatataatga 195  Q
    || |||||||||||  ||||| ||||| |||||||||||| |||| |  ||||||||||||  |||| | ||||||||    ||||||||| | |||||     
T  45832295 ggtaactaacgggttccacgtttaaaa-aagtaataaaatgtgtactacttggtcccacttttaaaaagcagtaataagtaaattatttttgtttaatg- 45832198  T
Q  196 tgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagt 263  Q
      ||||| |||| | |  ||||||||||  || ||||||||||||||||||||||||| |||||||||    
T  45832197 --taaagatagtagaacatatttaagtacctttcattggagtccttattagtgtattgccattggagt 45832132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 173 - 264
Target Start/End: Complemental strand, 27064545 - 27064454
Alignment:
Q  173 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 264  Q
    |||||||||||||| ||||||||||||||||||||| ||  |||||||  | |||  |||||||||| |||||||||||||||||| |||||    
T  27064545 aataaattatttttgtataatgatgtaaagttagtgagacatatttaaacagtttttattggagtccctattagtgtattgtcattagagtc 27064454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 173 - 264
Target Start/End: Complemental strand, 27085649 - 27085558
Alignment:
Q  173 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 264  Q
    |||||||||||||| ||||||||||||||||||||| ||  |||||||  | |||  |||||||||| |||||||||||||||||| |||||    
T  27085649 aataaattatttttgtataatgatgtaaagttagtgagacatatttaaacagtttttattggagtccctattagtgtattgtcattagagtc 27085558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 38068290 - 38068452
Alignment:
Q  1 ttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacggggaactatataaggacatgctctctcatg 100  Q
    ||||||||||| ||| ||| ||||  || |||||||| |||||||||||| ||||| |  ||| | |||| | |||||||||||||| | ||||||| ||    
T  38068290 ttaacaaggactactccccgttaagaaccctccattggaggaagaaaaaacgagtcccccttaaggaacgagtaactatataaggacct-ctctctcctg 38068388  T
Q  101 ggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgca 164  Q
    || |||||||| ||| ||||| ||||| || ||||||||| |||| |  |||||||||||||||    
T  38068389 ggtaactaacgagtctcacgtttaaaaaaaataataaaatgtgtactacttggtcccacttgca 38068452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 128 - 252
Target Start/End: Original strand, 4711545 - 4711665
Alignment:
Q  128 gaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaataaattatttttatataatgatgtaaagttagtgggatctatttaagtatttt 227  Q
    |||||||||||||||||| |  ||  ||| ||||| ||||||| ||||||||||||||| | |||||||||||||||||||  |  ||||||||    ||    
T  4711545 gaagtaataaaatatgtactacttaatccaacttgtaaaagaaataataaattatttttgtttaatgatgtaaagttagtgcaacatatttaag----tt 4711640  T
Q  228 ccattggagtccttattagtgtatt 252  Q
     ||||||||||||||||| ||||||    
T  4711641 tcattggagtccttattaatgtatt 4711665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 174 - 276
Target Start/End: Complemental strand, 38168227 - 38168122
Alignment:
Q  174 ataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc---gagtct 270  Q
    ||||||||||||| | |||||||||||| ||||||||   |||||||||| ||| ||||||||||||||||| ||||||   |||||||||   ||||||    
T  38168227 ataaattatttttgtttaatgatgtaaaattagtggggcttatttaagtacttttcattggagtccttattaatgtatttctattggagtcattgagtct 38168128  T
Q  271 ttaata 276  Q
    ||||||    
T  38168127 ttaata 38168122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 130 - 284
Target Start/End: Original strand, 38068459 - 38068627
Alignment:
Q  130 agtaataaaatatgtattggttggtcccacttgcaaaa-gaagtaata----aattatttttatataatgatgtaaagttagtggga------tctattt 218  Q
    ||||||||||| |||| |  ||||||||||||| |||| | |||||||    |||||||||| | ||||||||||||| ||||||||      | |||||    
T  38068459 agtaataaaatgtgtactacttggtcccacttgtaaaaaggagtaatatgtaaattatttttctttaatgatgtaaagatagtgggacatatttatattt 38068558  T
Q  219 aagtattttccattggagtccttattagtgtattgtcattggagtc---gagtctttaatagctacttt 284  Q
    ||||| ||| | |||||||||||||||||||||||||||| |||||   ||||| ||||||| ||||||    
T  38068559 aagtacttttctttggagtccttattagtgtattgtcattagagtcattgagtccttaataggtacttt 38068627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 125 - 251
Target Start/End: Original strand, 40445712 - 40445843
Alignment:
Q  125 aaagaagtaataaaatatgtattggttggtcccacttg-caaaagaagtaa----taaattatttttatataatgatgtaaagttagtgggatctattta 219  Q
    |||| ||||||||||| |||| |  |||||||||||||  ||||| |||||    ||||| |||||| | ||||||||||||| |||||||   ||||||    
T  40445712 aaaggagtaataaaatgtgtactacttggtcccacttgtaaaaaggagtaataggtaaatcatttttgtttaatgatgtaaagatagtgggccatattta 40445811  T
Q  220 agtattttccattggagtccttattagtgtat 251  Q
    |||||||| | |||||||||||||||||||||    
T  40445812 agtatttttcgttggagtccttattagtgtat 40445843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 4711274 - 4711403
Alignment:
Q  1 ttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacggggaactatataaggacatgctctctcatg 100  Q
    ||||||||||||||| |||||| | ||  ||| |||| ||||||||||||||||||  ||||| ||||| |  |||||||||| |||   ||||||| ||    
T  4711274 ttaacaaggaccactccccattgaagat-ctctattggaggaagaaaaaatgagtccatattaagcaactgacaactatataaagact--ctctctcttg 4711370  T
Q  101 ggcaactaacgggtcacacgtgtaaaagaagta 133  Q
    | ||||||||||||||| ||| |||||||||||    
T  4711371 gacaactaacgggtcacgcgtttaaaagaagta 4711403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 180 - 284
Target Start/End: Complemental strand, 17058900 - 17058793
Alignment:
Q  180 tatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc---gagtctttaata 276  Q
    ||||||| | ||||||||||||| |||||||  ||||||||||| ||| |||| ||||||||||||||||| |   |||||||||   ||||| ||||||    
T  17058900 tatttttgtttaatgatgtaaagatagtggggcctatttaagtacttttcatttgagtccttattagtgtactcctattggagtcattgagtccttaata 17058801  T
Q  277 gctacttt 284  Q
    ||||||||    
T  17058800 gctacttt 17058793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 91 - 176
Target Start/End: Complemental strand, 36622366 - 36622281
Alignment:
Q  91 ctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaata 176  Q
    ||||||| || |||||||||||||| ||| | ||||||||||||| |||||| |||  |||||||||||||  |||||||||||||    
T  36622366 ctctctcctgagcaactaacgggtcccacatttaaaagaagtaatcaaatatatataagttggtcccacttttaaaagaagtaata 36622281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 172 - 248
Target Start/End: Complemental strand, 13665858 - 13665782
Alignment:
Q  172 taataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtg 248  Q
    ||||||||||||||| | |||||||| ||||||||||||   |||||||||| ||| |||| |||||||||||||||    
T  13665858 taataaattatttttgtttaatgatgcaaagttagtggggcatatttaagtacttttcatttgagtccttattagtg 13665782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 32 - 176
Target Start/End: Original strand, 38067663 - 38067807
Alignment:
Q  32 ccattgaaggaagaaaaaatgagtctctattatgcaacggggaactatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaag 131  Q
    |||||| ||||||||||||||| || | |||| | ||| || ||||||||||| |    ||||||| | || ||||||||| |  ||||| |||||||||    
T  38067663 ccattggaggaagaaaaaatgaatccccattaaggaacaggtaactatataagaatcccctctctcctaggtaactaacggatttcacgtttaaaagaag 38067762  T
Q  132 taataaaatatgtattggttggtcccacttgcaaaagaagtaata 176  Q
    |||||||||||||| |   ||||||| ||| ||||||||||||||    
T  38067763 taataaaatatgtaatatgtggtcccgcttacaaaagaagtaata 38067807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 172 - 259
Target Start/End: Complemental strand, 30483010 - 30482923
Alignment:
Q  172 taataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattg 259  Q
    |||||||||| |||| |||||||||||||||||| || || |||||||| ||||||  |||||||||  ||||| |||||| ||||||    
T  30483010 taataaattacttttgtataatgatgtaaagttaatgcgacctatttaaatattttttattggagtctctattaatgtattatcattg 30482923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 40445551 - 40445725
Alignment:
Q  1 ttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacggggaactatataaggacatgctctctcatg 100  Q
    |||||||||||||||  ||||||| ||| |||||||| || ||||||||||||||| |  | | | |||    ||||||||||||||   ||||||||||    
T  40445551 ttaacaaggaccactctccattaaggaccctccattggagaaagaaaaaatgagtccccttaaag-aacaaacaactatataaggact--ctctctcatg 40445647  T
Q  101 ggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgca-aaagaagtaataaa 178  Q
     | |||||||||||| ||||| ||||| |||||||||||| |||| || |||  |||||||||| |||| |||||||||    
T  40445648 agtaactaacgggtcccacgtttaaaa-aagtaataaaatgtgtactgcttgaccccacttgcataaaggagtaataaa 40445725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 103 - 206
Target Start/End: Complemental strand, 49551892 - 49551789
Alignment:
Q  103 caactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaataaattatttttatataatgatgtaaag 202  Q
    |||||||| |||| || ||  |||||||||||||||||||||||  |||| ||| |||| | ||| || ||||||||||||||| | |||| ||||||||    
T  49551892 caactaacaggtctcatgttcaaaagaagtaataaaatatgtatgagttgatcctactttctaaataactaataaattatttttgtgtaataatgtaaag 49551793  T
Q  203 ttag 206  Q
    ||||    
T  49551792 ttag 49551789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 250
Target Start/End: Original strand, 19853994 - 19854071
Alignment:
Q  173 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgta 250  Q
    |||||||||||||| | | |||||||||||||||||||  ||||||||||| |||  |||  ||||||||||||||||    
T  19853994 aataaattatttttgtttgatgatgtaaagttagtggggcctatttaagtactttttattaaagtccttattagtgta 19854071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 44992073 - 44991898
Alignment:
Q  1 ttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctatt-atgcaacggggaactatataaggacatgctctctcat 99  Q
    ||||||||||||||| ||| |||| ||| |||||||| |||||||||||||||||| |  || |   |||||| ||||||||||||||   ||||||| |    
T  44992073 ttaacaaggaccactccccgttaaggaccctccattggaggaagaaaaaatgagtccccgttaaaagaacgggcaactatataaggac--tctctctcct 44991976  T
Q  100 gggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgca-aaagaagtaataaa 178  Q
     || ||||||| || | ||| | ||||| |||||||||||| |||| |  ||||||||||||||| |||| |||||||||    
T  44991975 aggtaactaac-ggccccacctttaaaa-aagtaataaaatgtgtactatttggtcccacttgcataaaggagtaataaa 44991898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 12191305 - 12191467
Alignment:
Q  1 ttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacggggaactatataaggacatgctctctcatg 100  Q
    ||||||||||||| | ||| |||| ||| || ||||||||||||||||||| ||||    ||||| |||| | ||||||||||||||   ||||||| ||    
T  12191305 ttaacaaggaccagtccccgttaaggacccttcattgaaggaagaaaaaattagtcctcgttatggaacgagcaactatataaggactctctctctcctg 12191404  T
Q  101 ggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgca 164  Q
     | ||  |||||||| || || ||||| |||||||| ||| |||| |  |||||||||||||||    
T  12191405 agtaatgaacgggtcccaagtataaaa-aagtaatataatgtgtactacttggtcccacttgca 12191467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 263
Target Start/End: Complemental strand, 56228294 - 56228205
Alignment:
Q  173 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagt 263  Q
    ||||||||| |||| | ||||||||||| ||||||||  ||||||||| || ||| ||||||||||||||||| |||| |  |||||||||    
T  56228294 aataaattagttttgtttaatgatgtaa-gttagtggtgtctatttaaatacttttcattggagtccttattaatgtacttccattggagt 56228205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 239
Target Start/End: Original strand, 34929264 - 34929320
Alignment:
Q  183 ttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtcc 239  Q
    ||||||||||| ||||||||||||||| |  |||||| ||||||| |||||||||||    
T  34929264 ttttatataataatgtaaagttagtggaacatatttaggtatttttcattggagtcc 34929320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 118 - 176
Target Start/End: Complemental strand, 27064631 - 27064573
Alignment:
Q  118 acgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaata 176  Q
    |||| |||||||||||| |||||||||||  |||||| |||||| | ||||||||||||    
T  27064631 acgtttaaaagaagtaagaaaatatgtataagttggttccactttcgaaagaagtaata 27064573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 118 - 176
Target Start/End: Complemental strand, 27085735 - 27085677
Alignment:
Q  118 acgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaata 176  Q
    |||| |||||||||||| |||||||||||  |||||| |||||| | ||||||||||||    
T  27085735 acgtttaaaagaagtaagaaaatatgtataagttggttccactttcgaaagaagtaata 27085677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 56228722 - 56228562
Alignment:
Q  1 ttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacggggaactatataaggaca--tgctctctca 98  Q
    |||||||| |||||| ||| |||| ||| |||||||| ||||| ||||| |||||||      || |||||  ||||||||||||||   | |||||||     
T  56228722 ttaacaagaaccactccccgttaaggaccctccattggaggaacaaaaa-tgagtct------tggaacggacaactatataaggactatttctctctcc 56228630  T
Q  99 tgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaa 167  Q
    || | |||||||||||| ||||| ||||| ||||||||||||||||| |  |||| |||||||| ||||    
T  56228629 tgagtaactaacgggtcccacgtttaaaa-aagtaataaaatatgtactacttggccccacttgtaaaa 56228562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 32409316 - 32409373
Alignment:
Q  1 ttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctc 58  Q
    ||||||||||||||| ||| |||| ||  |||||||| |||||||| |||||||||||    
T  32409316 ttaacaaggaccactccccgttaaggatcctccattggaggaagaacaaatgagtctc 32409373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 371
Target Start/End: Original strand, 37450946 - 37451019
Alignment:
Q  298 ttataaataagtgatgtttacatgtatggtccatttaagaagtctctattagtagactaccattatggatgctc 371  Q
    |||||||||||||| ||  ||||||  | || |||||||||||| |||||| | |||||||||| |||||||||    
T  37450946 ttataaataagtgacgtgcacatgtgggatctatttaagaagtccctattaatggactaccattgtggatgctc 37451019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 123 - 167
Target Start/End: Complemental strand, 36456554 - 36456510
Alignment:
Q  123 taaaagaagtaataaaatatgtattggttggtcccacttgcaaaa 167  Q
    ||||||||||||||||||||||||  ||||||| ||||| |||||    
T  36456554 taaaagaagtaataaaatatgtataagttggtctcactttcaaaa 36456510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 39718898 - 39718982
Alignment:
Q  1 ttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacggggaactatataagg 85  Q
    |||| |||||||||| ||| |||| ||| || ||||| ||||||||||||||||| ||  ||| | |||| | ||||||||||||    
T  39718898 ttaataaggaccactccccgttaaggactcttcattgcaggaagaaaaaatgagtttccgttaaggaacgagcaactatataagg 39718982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 95; Significance: 2e-46; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 91 - 288
Target Start/End: Complemental strand, 25701729 - 25701529
Alignment:
Q  91 ctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaataaattatttttatat 190  Q
    ||||||||| | |||||||||| || ||||||||||||||||||||||||||||   |||| |||||||||||||||||| ||||||||||||||| |||    
T  25701729 ctctctcatcgacaactaacggatcccacgtgtaaaagaagtaataaaatatgttccggtttgtcccacttgcaaaagaaataataaattatttttgtat 25701630  T
Q  191 aatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc---gagtctttaatagctactttcat 287  Q
    ||| |||||||||| ||| ||  |||||||||| |||  |||| ||| ||||||||||||||||||||||||||   || || ||||||| |||||||||    
T  25701629 aataatgtaaagttggtgagacttatttaagtacttttaattgaagttcttattagtgtattgtcattggagtctttgaatccttaataggtactttcat 25701530  T
Q  288 t 288  Q
    |    
T  25701529 t 25701529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 91 - 264
Target Start/End: Original strand, 47142675 - 47142848
Alignment:
Q  91 ctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaataaattatttttatat 190  Q
    ||||||| | |||||||||| | || ||||| ||||||||||||||||||||||| |  ||||||   ||||||||| |||||||||||||||||| | |    
T  47142675 ctctctcctaggcaactaacagatctcacgtttaaaagaagtaataaaatatgtactatttggtcttccttgcaaaataagtaataaattatttttgttt 47142774  T
Q  191 aatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 264  Q
    | |||||||||||||||| || ||||||||||| ||| ||||||||||||||||||| | ||||||||||||||    
T  47142775 agtgatgtaaagttagtgagacctatttaagtagttttcattggagtccttattagtatcttgtcattggagtc 47142848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 92 - 264
Target Start/End: Original strand, 46981748 - 46981920
Alignment:
Q  92 tctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaataaattatttttatata 191  Q
    ||||||||| |||||||||||||| ||| |  ||||||| |||||||| |||||   ||||||| | | | ||||||||||||| ||||| |||| ||||    
T  46981748 tctctcatgagcaactaacgggtctcacattcaaaagaaataataaaacatgtagaagttggtctcgcgttcaaaagaagtaatgaattacttttgtata 46981847  T
Q  192 atgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 264  Q
    ||||||||||||||||| ||  ||||||  || ||| || || ||  ||||||||||||||||||||||||||    
T  46981848 atgatgtaaagttagtgagacttatttagatacttttcaatgaagctcttattagtgtattgtcattggagtc 46981920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 173 - 263
Target Start/End: Complemental strand, 1559680 - 1559590
Alignment:
Q  173 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagt 263  Q
    ||||||| |||||| ||||||||||||||||||||| || ||||||||||||||| |||| |||| ||||||||||||||| |||||||||    
T  1559680 aataaataatttttgtataatgatgtaaagttagtgagacctatttaagtatttttcattagagttcttattagtgtattgacattggagt 1559590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 1560080 - 1559900
Alignment:
Q  1 ttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacggggaactatataaggacatgctctctcatg 100  Q
    ||||||| ||||||| | | |||| ||| | |||||| ||||||||||||||| ||  | ||| |||||    ||||||||||||||   || |||||||    
T  1560080 ttaacaaagaccactcctcgttaaggactccccattggaggaagaaaaaatgaatccatgttaagcaacatacaactatataaggaccatctttctcatg 1559981  T
Q  101 ggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaataaatta 181  Q
    |||||||| | |||| ||||| ||||| ||||||||||||||||| | ||||||| ||||||||| |||||||||| ||||    
T  1559980 ggcaactagcaggtctcacgtttaaaaaaagtaataaaatatgtactagttggtcacacttgcaacagaagtaatatatta 1559900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 19610929 - 19611091
Alignment:
Q  1 ttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacggggaactatataaggacatgctctctcatg 100  Q
    ||||||||||| |||| || |||| ||| |||||||| |||||||||||||||||| |  ||| | |||||| |||||||||||||| | ||||||| |     
T  19610929 ttaacaaggactactttccgttaaggaccctccattggaggaagaaaaaatgagtccccgttaaggaacgggtaactatataaggaccttctctctctta 19611028  T
Q  101 ggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgca 164  Q
     | |||||||||||| ||||| ||||| || ||||||||| |||| |  |||||||||||||||    
T  19611029 agtaactaacgggtctcacgtttaaaa-aattaataaaatgtgtactacttggtcccacttgca 19611091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 173 - 264
Target Start/End: Original strand, 31833957 - 31834048
Alignment:
Q  173 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 264  Q
    |||||||||||||| | ||||||||||||||||||||||||||||||||||||||  ||| |||| |||||||||||| | | |||||||||    
T  31833957 aataaattatttttgtttaatgatgtaaagttagtgggatctatttaagtattttttattagagttcttattagtgtacttttattggagtc 31834048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 173 - 264
Target Start/End: Original strand, 32552306 - 32552397
Alignment:
Q  173 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 264  Q
    ||||| || ||||| | |||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||| | |||||||||||    
T  32552306 aataatttttttttgtttaatgatgtaaagttaatgggacctatttaagtatttttcattggagtccttattagtgtactctcattggagtc 32552397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 91 - 208
Target Start/End: Complemental strand, 32722031 - 32721914
Alignment:
Q  91 ctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaataaattatttttatat 190  Q
    ||||||| || ||||||||||| ||  || | ||||||||||||||||||||||||  |||||||  |||| ||||||| ||||||||||| ||||  ||    
T  32722031 ctctctcctgagcaactaacggatcctacatttaaaagaagtaataaaatatgtataagttggtcttactttcaaaagatgtaataaattacttttgaat 32721932  T
Q  191 aatgatgtaaagttagtg 208  Q
    ||||||||||||||||||    
T  32721931 aatgatgtaaagttagtg 32721914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 172 - 374
Target Start/End: Original strand, 23059103 - 23059304
Alignment:
Q  172 taataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc---gagt 268  Q
    ||||||||||||||| | |||||||| ||||||||||||   |||||||||| ||| |||| ||||||||||||||| |||| ||||||||||   ||||    
T  23059103 taataaattatttttgtttaatgatgcaaagttagtggggcatatttaagtacttttcatttgagtccttattagtggattgccattggagtcattgagt 23059202  T
Q  269 ctttaatagctactttcattnnnnnnnnnttataaataagtgatgtttacatgtatggtccatttaagaagtctctattagtagactaccattatggatg 368  Q
    ||||||||  |||||| |||         |||||||||||||| || || | ||  |||||||||||| ||||| |||||    ||||||||||||||||    
T  23059203 ctttaataagtacttttatt---aatatattataaataagtgacgtgta-acgtggggtccatttaaggagtctttattaaggaactaccattatggatg 23059298  T
Q  369 ctctaa 374  Q
    ||||||    
T  23059299 ctctaa 23059304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 175 - 284
Target Start/End: Original strand, 19611149 - 19611261
Alignment:
Q  175 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc---gagtctt 271  Q
    |||||||||||| | ||||||||||||| ||||||||  |||||||||| ||| ||||| | | ||||||||||||||||||||||||||   ||||| |    
T  19611149 taaattatttttgtttaatgatgtaaagatagtgggacatatttaagtacttttcattgaatttcttattagtgtattgtcattggagtcattgagtcct 19611248  T
Q  272 taatagctacttt 284  Q
    |||||| ||||||    
T  19611249 taataggtacttt 19611261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 173 - 250
Target Start/End: Complemental strand, 1151687 - 1151610
Alignment:
Q  173 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgta 250  Q
    |||||||||||||| | |||||||||||||||||||||  ||||||||||| |||  |||||||||||||||||||||    
T  1151687 aataaattatttttgtttaatgatgtaaagttagtggggcctatttaagtactttttattggagtccttattagtgta 1151610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 41 - 176
Target Start/End: Original strand, 38585784 - 38585919
Alignment:
Q  41 gaagaaaaaatgagtctctattatgcaacggggaactatataagga-catgctctctcatgggcaactaacgggtcacacgtgtaaaa-gaagtaataaa 138  Q
    |||||||||||||||||| |||| |||||||  ||||||||||||| ||| |||||||||  | |||||||||||| ||||| ||||| ||| |||||||    
T  38585784 gaagaaaaaatgagtctc-attaagcaacggacaactatataaggatcat-ctctctcataagaaactaacgggtcgcacgtttaaaaagaaataataaa 38585881  T
Q  139 atatgtattggttggtcccacttgcaaaagaagtaata 176  Q
    ||||||||| |||||||  | || ||||||||||||||    
T  38585882 atatgtattagttggtcttatttacaaaagaagtaata 38585919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 175 - 264
Target Start/End: Original strand, 55222401 - 55222490
Alignment:
Q  175 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 264  Q
    |||||||||||| | ||||||||||||| ||||| ||  |||||||||| ||| |||||||||  |||||||||||||||||||||||||    
T  55222401 taaattatttttgtttaatgatgtaaagatagtgagacatatttaagtaattttcattggagtatttattagtgtattgtcattggagtc 55222490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 32 - 172
Target Start/End: Complemental strand, 1292173 - 1292033
Alignment:
Q  32 ccattgaaggaagaaaaaatgagtctctattatgcaacggggaactatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaag 131  Q
    |||||| | ||||||||||||||| || |||| | ||| || ||||||||||||||    |||||| | |||||||||||| || ||||| |||||||||    
T  1292173 ccattggaagaagaaaaaatgagtatccattaagaaacaggtaactatataaggactctatctctcctaggcaactaacggatcccacgtttaaaagaag 1292074  T
Q  132 taataaaatatgtattggttggtcccacttgcaaaagaagt 172  Q
    |||||||||||||| |  |||||| || || ||||||||||    
T  1292073 taataaaatatgtactatttggtctcatttccaaaagaagt 1292033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 28131121 - 28131296
Alignment:
Q  1 ttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacggggaactatataaggacatgctctctcatg 100  Q
    |||||||||| |||| || ||||| ||| | |||||| |||||||||||||||||   ||||| | ||||||  ||||||||| |||    |||||| |     
T  28131121 ttaacaaggatcactccctattaaagaccccccattggaggaagaaaaaatgagttcttattaaggaacgggtcactatataaagactctttctctccta 28131220  T
Q  101 ggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaata 176  Q
     |||||||| ||||  ||||| ||||| || |||||| |||||||||  ||||||||||||||||||||| |||||    
T  28131221 agcaactaatgggttccacgtttaaaataaataataatatatgtattacttggtcccacttgcaaaagaaataata 28131296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 213 - 374
Target Start/End: Original strand, 38585977 - 38586138
Alignment:
Q  213 ctatttaagtattttccattggagtccttattagtgtattgtcattggagtc---gagtctttaatagctactttcattnnnnnnnnnttataaataagt 309  Q
    |||||||||||| ||  ||||||||| |||||||||||||||||||||||||   ||||| ||||||||||||||||||         ||||||||||||    
T  38585977 ctatttaagtatatttgattggagtctttattagtgtattgtcattggagtcattgagtccttaatagctactttcatt---aaaaaattataaataagt 38586073  T
Q  310 gatgtttacatgtatggtccatttaagaagtctctattagtagactaccattatggatgctctaa 374  Q
     | || |||| ||   ||||||||||| ||||| | |||||  ||||||||| ||||||||||||    
T  38586074 aacgtgtacaagtgaagtccatttaaggagtctatgttagtgtactaccattgtggatgctctaa 38586138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 173 - 259
Target Start/End: Complemental strand, 37526851 - 37526766
Alignment:
Q  173 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattg 259  Q
    ||||||||||||| |||||||||||||||||||||   || |||||||||||||| ||||| ||||  ||||||| |||||||||||    
T  37526851 aataaattatttt-atataatgatgtaaagttagtaaaatatatttaagtatttttcattgaagtctctattagtttattgtcattg 37526766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 158 - 227
Target Start/End: Complemental strand, 7325633 - 7325564
Alignment:
Q  158 acttgcaaaagaagtaataaattatttttatataatgatgtaaagttagtgggatctatttaagtatttt 227  Q
    ||||| ||||||||||||||||||||||| | ||||||||||||||||||| ||  ||||||| ||||||    
T  7325633 acttgtaaaagaagtaataaattatttttgtttaatgatgtaaagttagtgagaaatatttaaatatttt 7325564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 30 - 138
Target Start/End: Complemental strand, 35540655 - 35540547
Alignment:
Q  30 ctccattgaaggaagaaaaaatgagtctctattatgcaacggggaactatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaaga 129  Q
    |||||||| ||||||||||||||||||  ||||| | |||  | |||||||||||||  | ||||||| | ||||||||||||||| ||| | |||||||    
T  35540655 ctccattggaggaagaaaaaatgagtcaatattaagtaacatgtaactatataaggattttctctctcctaggcaactaacgggtctcacatttaaaaga 35540556  T
Q  130 agtaataaa 138  Q
    | |||||||    
T  35540555 aataataaa 35540547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 128 - 205
Target Start/End: Original strand, 40242606 - 40242684
Alignment:
Q  128 gaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaataaatta-tttttatataatgatgtaaagtta 205  Q
    ||||||||||||||||||||  ||  |||||||| ||||||||||||| ||||| ||||| |||||| |||||||||||    
T  40242606 gaagtaataaaatatgtattaattaatcccacttacaaaagaagtaattaattattttttgtataataatgtaaagtta 40242684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 3936051 - 3935875
Alignment:
Q  1 ttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacggggaactatataaggacatgctctctcatg 100  Q
    |||||||||||| ||  || |||| ||| |||||||| | |||||||||||||||| || ||| | ||||   ||||||||||||||   ||||||| ||    
T  3936051 ttaacaaggaccgctctccgttaaggaccctccattggaagaagaaaaaatgagtccctgttaaggaacgaaaaactatataaggaccctctctctcttg 3935952  T
Q  101 ggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaataaa 178  Q
    || |||||||||||   || | ||||| |||||||||||| |||| |  ||  ||||||||| ||||| |||||||||    
T  3935951 ggtaactaacgggttcaacatttaaaa-aagtaataaaatgtgtactacttaatcccacttgtaaaaggagtaataaa 3935875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 259
Target Start/End: Original strand, 14903368 - 14903453
Alignment:
Q  174 ataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattg 259  Q
    ||||||||||||| | |||||||| ||||||||||||   ||||||  || ||| |||| ||||| ||||||||||||||||||||    
T  14903368 ataaattatttttgtttaatgatgcaaagttagtggggcatatttatatacttttcatttgagtcattattagtgtattgtcattg 14903453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 190 - 374
Target Start/End: Original strand, 28131342 - 28131526
Alignment:
Q  190 taatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggag---tcgagtctttaatagctactttca 286  Q
    ||||||||||||||||||| ||  |||||||||| |||  || ||||||||| ||||||||||  ||||||||   ||| ||||||||||| |||||| |    
T  28131342 taatgatgtaaagttagtgagacttatttaagtaatttttatgggagtccttgttagtgtattaccattggagtcatcgggtctttaatagatactttta 28131441  T
Q  287 ttnnnnnnnnnttataaataagtgatgtttacatgtatggtccatttaagaagtctctattagtagactaccattatggatgctctaa 374  Q
    ||         ||||||||||||||||| ||||||   | |||||||||| |||| ||||||  ||| ||||||| | ||||||||||    
T  28131442 tt--aaaaaaattataaataagtgatgtgtacatgcgggatccatttaaggagtccctatta-aagattaccattgtagatgctctaa 28131526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 21 - 145
Target Start/End: Complemental strand, 1152111 - 1151987
Alignment:
Q  21 ttaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacggggaactatataaggacatgctctctcatgggcaactaacgggtcacacg 120  Q
    |||| ||| |||||||| ||||||||||||||||||   |||| | |||| | || |||||||| ||   ||||||| | ||||||||| || || | ||    
T  1152111 ttaaggaccctccattggaggaagaaaaaatgagtcctcattaagaaacgagtaattatataagtaccctctctctcctaggcaactaagggatcccgcg 1152012  T
Q  121 tgtaaaagaagtaataaaatatgta 145  Q
    | |||||||||||||||||||||||    
T  1152011 tttaaaagaagtaataaaatatgta 1151987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 218 - 262
Target Start/End: Original strand, 1294572 - 1294616
Alignment:
Q  218 taagtattttccattggagtccttattagtgtattgtcattggag 262  Q
    |||||| ||| ||||||||||||||||||||||||||||||||||    
T  1294572 taagtacttttcattggagtccttattagtgtattgtcattggag 1294616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 174 - 264
Target Start/End: Complemental strand, 5992285 - 5992202
Alignment:
Q  174 ataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 264  Q
    ||||||||||||||| ||||||||||||| ||||||||  ||| |       || ||||||||||||||||||||||||||||||| ||||    
T  5992285 ataaattatttttatttaatgatgtaaagatagtgggacatatct-------tttcattggagtccttattagtgtattgtcattgaagtc 5992202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 327 - 375
Target Start/End: Original strand, 40243198 - 40243246
Alignment:
Q  327 tccatttaagaagtctctattagtagactaccattatggatgctctaag 375  Q
    |||||||||| |||||||||||||||| ||||||| |||||||||||||    
T  40243198 tccatttaaggagtctctattagtagattaccattgtggatgctctaag 40243246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 174 - 253
Target Start/End: Complemental strand, 3935834 - 3935755
Alignment:
Q  174 ataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattg 253  Q
    ||||||||||||| | ||||||||||||| || || ||  |||||||||| ||| ||||||||||||| |||| ||||||    
T  3935834 ataaattatttttgtttaatgatgtaaagataatgagacatatttaagtacttttcattggagtccttgttagagtattg 3935755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 177 - 264
Target Start/End: Original strand, 13778185 - 13778271
Alignment:
Q  177 aattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 264  Q
    ||||| |||||||||||||||||| ||||||| ||  |||||||| | ||| |||||||||| || ||| |||||||||||| |||||    
T  13778185 aattacttttatataatgatgtaa-gttagtgagacatatttaagcacttttcattggagtctttgttaatgtattgtcattagagtc 13778271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 217 - 264
Target Start/End: Original strand, 48098387 - 48098434
Alignment:
Q  217 ttaagtattttccattggagtccttattagtgtattgtcattggagtc 264  Q
    |||||||||||  |||||||||||||||| ||||||||||||||||||    
T  48098387 ttaagtattttttattggagtccttattaatgtattgtcattggagtc 48098434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 101 - 178
Target Start/End: Original strand, 48098288 - 48098365
Alignment:
Q  101 ggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaataaa 178  Q
    ||||||||||| |||  |||| |||||||| |||||||||||||| |  || |||| ||||| |||||||||||||||    
T  48098288 ggcaactaacgagtcctacgtttaaaagaactaataaaatatgtactacttagtcctacttgtaaaagaagtaataaa 48098365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 1292343 - 1292517
Alignment:
Q  1 ttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacggggaactatataaggacatgctctctcatg 100  Q
    ||||||||||| ||| ||| |||| | | |||||||  |||||||||||||||||| |  ||| | |||    ||||||||||||||   ||||||| |     
T  1292343 ttaacaaggac-actcccctttaagggccctccattcgaggaagaaaaaatgagtccccgttaaggaacaaacaactatataaggacc--ctctctccta 1292439  T
Q  101 ggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgca-aaagaagtaataaa 178  Q
    || |||||||||||| ||| | ||||| |||||||||||| |||| |  ||||||||||||||| |||| |||||||||    
T  1292440 ggtaactaacgggtcccacatttaaaa-aagtaataaaatgtgtactaattggtcccacttgcataaaggagtaataaa 1292517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 74 - 176
Target Start/End: Original strand, 33428690 - 33428792
Alignment:
Q  74 aactatataagg-acatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagt 172  Q
    |||||||||||| |||| ||||||| | | ||| ||||||||| || || ||||| |||||||||||||||||||   ||||||||| |  |||||||||    
T  33428690 aactatataaggtacat-ctctctcctagacaaataacgggtctcatgtttaaaaaaagtaataaaatatgtattatgtggtcccacatagaaaagaagt 33428788  T
Q  173 aata 176  Q
    ||||    
T  33428789 aata 33428792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 374
Target Start/End: Original strand, 47142901 - 47142950
Alignment:
Q  325 ggtccatttaagaagtctctattagtagactaccattatggatgctctaa 374  Q
    |||||||||||| ||||||| ||||| |||||||||| |||||| |||||    
T  47142901 ggtccatttaaggagtctcttttagtggactaccattgtggatggtctaa 47142950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 87; Significance: 1e-41; HSPs: 5)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 13549 - 13670
Alignment:
Q  1 ttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacggggaactatataaggacatgctctctcatg 100  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||         ||    
T  13549 ttaacaaggaccgcttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacggggaattatgtaaggacat---------tg 13639  T
Q  101 ggcaactaacgggtcacacgtgtaaaagaag 131  Q
    |||||||||||||||||||||||||||||||    
T  13640 ggcaactaacgggtcacacgtgtaaaagaag 13670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 21286 - 21407
Alignment:
Q  1 ttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacggggaactatataaggacatgctctctcatg 100  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||         ||    
T  21286 ttaacaaggaccgcttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacggggaattatgtaaggacat---------tg 21376  T
Q  101 ggcaactaacgggtcacacgtgtaaaagaag 131  Q
    |||||||||||||||||||||||||||||||    
T  21377 ggcaactaacgggtcacacgtgtaaaagaag 21407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 164 - 269
Target Start/End: Original strand, 13663 - 13769
Alignment:
Q  164 aaaagaag-taataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggag 262  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  13663 aaaagaagctaatagattatttttatataatgatgtaaagttagtgggacctatttaaatattttccattggaatccttattagtgtattgtcattggag 13762  T
Q  263 tcgagtc 269  Q
    |||||||    
T  13763 tcgagtc 13769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 164 - 269
Target Start/End: Original strand, 21400 - 21506
Alignment:
Q  164 aaaagaag-taataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggag 262  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  21400 aaaagaagctaatagattatttttatataatgatgtaaagttagtgggacctatttaaatattttccattggaatccttattagtgtattgtcattggag 21499  T
Q  263 tcgagtc 269  Q
    |||||||    
T  21500 tcgagtc 21506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 298 - 397
Target Start/End: Original strand, 21924 - 22023
Alignment:
Q  298 ttataaataagtgatgtttacatgtatggtccatttaagaagtctctattagtagactaccattatggatgctctaagtggtttattcaatttgttttga 397  Q
    ||||||||||||||||| || |||||||||||||| ||||||||||| ||||| || ||||||| |||||||||||||||||||||||||||||||||||    
T  21924 ttataaataagtgatgtatatatgtatggtccattgaagaagtctctgttagtggattaccattgtggatgctctaagtggtttattcaatttgttttga 22023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 2e-37; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 1581311 - 1581578
Alignment:
Q  1 ttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacggggaactatataaggacatgctctctcatg 100  Q
    ||||||||||||||||| | |||| ||| || ||||| ||||||||||||||| |    ||||   |||||| ||||||||||||||   ||||||| ||    
T  1581311 ttaacaaggaccacttctcgttaaggactcttcattggaggaagaaaaaatgaattcgcattaaagaacgggcaactatataaggaccctctctctcctg 1581410  T
Q  101 ggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaaga-agtaataa----attatttttatataatga 195  Q
    || |||||||||||| | ||| ||||| |||||||||||| |||| |  ||||||||||||| ||||   ||||||||    ||||||||| | ||||||    
T  1581411 ggtaactaacgggtctcgcgtttaaaa-aagtaataaaatgtgtactacttggtcccacttgtaaaaatgagtaataagtaaattatttttgtttaatga 1581509  T
Q  196 tgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 264  Q
    ||||||| ||||||||  |||||||||| ||| ||||||||||||||||| |||||||||||| |||||    
T  1581510 tgtaaagatagtgggacatatttaagtacttttcattggagtccttattaatgtattgtcattcgagtc 1581578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 173 - 373
Target Start/End: Complemental strand, 7177152 - 7176952
Alignment:
Q  173 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc---gagtc 269  Q
    |||||||||||||| ||||||| ||||||||||||||||  |||||||||| ||| |||||||| |||||||||||||||||||||||||||   |||||    
T  7177152 aataaattatttttgtataatggtgtaaagttagtgggacttatttaagtacttttcattggagcccttattagtgtattgtcattggagtcattgagtc 7177053  T
Q  270 tttaatagctactttcattnnnnnnnnnttataaataagtgatgtttacatgtatggtccatttaagaagtctctattagtagactaccattatggatgc 369  Q
     ||||||| ||||||||||         |||||||||| |||||| |||| ||  ||||||| |||||||||  |||||||  |||| ||||||||||||    
T  7177052 cttaatagatactttcatt---aaaaaattataaataaatgatgtgtacacgtggggtccatataagaagtccttattagtgtactatcattatggatgc 7176956  T
Q  370 tcta 373  Q
    ||||    
T  7176955 tcta 7176952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 173 - 375
Target Start/End: Complemental strand, 22800667 - 22800462
Alignment:
Q  173 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc---gagtc 269  Q
    ||||||||| |||| |||||||||||||||||||||||| |||||||||||  || ||||||||||| ||||||||||||||||||||||||   |||||    
T  22800667 aataaattacttttgtataatgatgtaaagttagtgggacctatttaagtacatttcattggagtccctattagtgtattgtcattggagtcattgagtc 22800568  T
Q  270 tttaatagctactttcattnnnnnnnnnttataaataagtgatgtttacatgtatggtccatttaagaagtctctattagtagactaccattatggatgc 369  Q
     |||||||  | |||  ||         |||||||||| |||||| |||||||   ||||||||||| |||  ||||||||  ||||||||| |||||||    
T  22800567 cttaatagacattttttttattaaaaaattataaataaatgatgtgtacatgtggagtccatttaaggagttcctattagtgtactaccattgtggatgc 22800468  T
Q  370 tctaag 375  Q
    ||||||    
T  22800467 tctaag 22800462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 123 - 264
Target Start/End: Complemental strand, 14523316 - 14523171
Alignment:
Q  123 taaaagaagtaataaaatatgtattggttggtcccacttg-caaaagaagtaa----taaattatttttatataatgatgtaaagttagtgggatctatt 217  Q
    |||||||| |||||||||||| | |  |||||||||||||  ||||| |||||    |||||||||||| | ||||||||||||| |||||| |  ||||    
T  14523316 taaaagaa-taataaaatatgcactacttggtcccacttgtaaaaaggagtaatatgtaaattatttttgtttaatgatgtaaagatagtggaacatatt 14523218  T
Q  218 taagtattttccattggagtccttattagtgtattgtcattggagtc 264  Q
    |||||| ||| || |||||||||||||||||||||||||||| ||||    
T  14523217 taagtacttttcagtggagtccttattagtgtattgtcattgaagtc 14523171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 12796467 - 12796294
Alignment:
Q  1 ttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacggggaactatataaggacatgctctctcatg 100  Q
    |||||||||| |||| ||  ||||  || |||||||| |||||||||||| |||||  ||||| ||||| |  |||||||||| |||   ||||||| |     
T  12796467 ttaacaaggatcactccctgttaaataccctccattggaggaagaaaaaaagagtccttattaagcaacagacaactatataatgacc--ctctctccta 12796370  T
Q  101 ggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaata 176  Q
    ||||||||||| ||| ||  | |||| ||| |||||||||||||| | |||| |||||||||||||||||||||||    
T  12796369 ggcaactaacgagtctcaaatttaaaggaattaataaaatatgtactagttgatcccacttgcaaaagaagtaata 12796294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 173 - 264
Target Start/End: Complemental strand, 11989808 - 11989717
Alignment:
Q  173 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 264  Q
    ||||||||| ||||| ||||||||||||| |||||| ||  |||||||| | ||| ||||||||||| | ||||||||||||||||||||||    
T  11989808 aataaattacttttacataatgatgtaaaattagtgagacatatttaagcacttttcattggagtccatgttagtgtattgtcattggagtc 11989717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 34 - 176
Target Start/End: Original strand, 13281957 - 13282097
Alignment:
Q  34 attgaaggaagaaaaaatgagtctctattatgcaacggggaactatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagta 133  Q
    |||||||||||||||||||||||  ||||| | || | |  ||| |||||||||   ||||||| | |||||||||||| ||  || |||||||||||||    
T  13281957 attgaaggaagaaaaaatgagtcattattaaggaatgagtcactctataaggact--ctctctcgtaggcaactaacggatcttacatgtaaaagaagta 13282054  T
Q  134 ataaaatatgtattggttggtcccacttgcaaaagaagtaata 176  Q
    |||| ||||||| |  |||||| ||||||||||||||||||||    
T  13282055 ataatatatgtactacttggtctcacttgcaaaagaagtaata 13282097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 102 - 173
Target Start/End: Complemental strand, 45251303 - 45251232
Alignment:
Q  102 gcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagta 173  Q
    |||||||||||||| ||||| ||||||||||||||||| ||||| | ||||||| |||||||||||||||||    
T  45251303 gcaactaacgggtcccacgtttaaaagaagtaataaaacatgtactagttggtctcacttgcaaaagaagta 45251232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 176 - 250
Target Start/End: Complemental strand, 12796029 - 12795955
Alignment:
Q  176 aaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgta 250  Q
    ||||||||||| | |||||||||||||||||||||  ||||||||||| ||| |||||||||||||| |||||||    
T  12796029 aaattatttttgtttaatgatgtaaagttagtggggcctatttaagtacttttcattggagtccttactagtgta 12795955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 32 - 176
Target Start/End: Complemental strand, 22800837 - 22800695
Alignment:
Q  32 ccattgaaggaagaaaaaatgagtctctattatgcaacggggaactatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaag 131  Q
    |||||| |||||||||||||| ||   ||||| | ||| || |||||||||| |||   ||||||| || ||||||||||| || ||||   ||||||||    
T  22800837 ccattggaggaagaaaaaatgggtacttattaggtaacaggcaactatataacgact--ctctctcctgagcaactaacggatcccacgatcaaaagaag 22800740  T
Q  132 taataaaatatgtattggttggtcccacttgcaaaagaagtaata 176  Q
    |||||||||||||||  ||||| ||||||| ||||||||||||||    
T  22800739 taataaaatatgtataagttgggcccactttcaaaagaagtaata 22800695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 31 - 176
Target Start/End: Complemental strand, 29638027 - 29637882
Alignment:
Q  31 tccattgaaggaagaaaaaatgagtctctattatgcaacggggaactatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaa 130  Q
    |||||||  ||||||||||||||||| | |||| | ||| || || | |||||||||   || |||| | |||||||||||  || ||||||||||||||    
T  29638027 tccattgggggaagaaaaaatgagtccccattaaggaacaggtaattgtataaggactctctttctcctaggcaactaacgaatctcacgtgtaaaagaa 29637928  T
Q  131 gtaataaaatatgtattggttggtcccacttgcaaaagaagtaata 176  Q
    |||||||||||| ||||   ||||||| ||| ||||||||||||||    
T  29637927 gtaataaaatatatattatgtggtcccgcttacaaaagaagtaata 29637882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 102 - 176
Target Start/End: Complemental strand, 7177449 - 7177375
Alignment:
Q  102 gcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaata 176  Q
    ||||||||||| || ||||| |||||||| |||||||||||||| | |||| ||||||||| |||||||||||||    
T  7177449 gcaactaacggatctcacgtttaaaagaattaataaaatatgtactagttgatcccacttgtaaaagaagtaata 7177375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 5423338 - 5423423
Alignment:
Q  1 ttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacggggaactatataagga 86  Q
    ||||||||||||||| ||| |||| ||| |||||||||||||||||||||||||||    ||| | |||||| |||||||||||||    
T  5423338 ttaacaaggaccactccccgttaaggaccctccattgaaggaagaaaaaatgagtcctcgttaaggaacgggcaactatataagga 5423423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 173 - 264
Target Start/End: Complemental strand, 8693123 - 8693032
Alignment:
Q  173 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 264  Q
    ||||||||| |||| |||||| ||||||||||||| ||| ||||||||  | ||| ||||||| |||||||| || ||||||||||| ||||    
T  8693123 aataaattacttttgtataataatgtaaagttagtaggacctatttaacaacttttcattggaatccttattggtttattgtcattgaagtc 8693032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 214 - 264
Target Start/End: Original strand, 5423517 - 5423567
Alignment:
Q  214 tatttaagtattttccattggagtccttattagtgtattgtcattggagtc 264  Q
    |||||||||| ||| ||||| ||||||||||||||||||||||||||||||    
T  5423517 tatttaagtacttttcattgaagtccttattagtgtattgtcattggagtc 5423567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 264
Target Start/End: Complemental strand, 12532417 - 12532328
Alignment:
Q  175 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 264  Q
    |||||||||||| | ||||||||||||| ||||||||  | |||||||| ||| |||| || || |||||||||||||  ||||||||||    
T  12532417 taaattatttttgtttaatgatgtaaagatagtgggacatgtttaagtacttttcattagaatctttattagtgtattaccattggagtc 12532328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 130 - 238
Target Start/End: Original strand, 43976594 - 43976707
Alignment:
Q  130 agtaataaaatatgtattggttggtcccacttgcaaaa-gaagtaata----aattatttttatataatgatgtaaagttagtgggatctatttaagtat 224  Q
    ||||||||||| |||| |  ||||||||||||| |||| | |||||||    |||| ||||| | ||||||||||||| ||||||||| ||||||||||     
T  43976594 agtaataaaatgtgtactacttggtcccacttgtaaaaaggagtaataggtcaattgtttttgtttaatgatgtaaagatagtgggatatatttaagtac 43976693  T
Q  225 tttccattggagtc 238  Q
    ||| ||||||||||    
T  43976694 ttttcattggagtc 43976707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 174 - 264
Target Start/End: Original strand, 13282128 - 13282221
Alignment:
Q  174 ataaattatttttatataatgatgtaaagttagtgggatctatttaagta---ttttccattggagtccttattagtgtattgtcattggagtc 264  Q
    |||||||| |||| | ||||||||||||||||||||||||||||||| ||   |||  ||| ||||| ||  |||||||||||||||| |||||    
T  13282128 ataaattagttttgtttaatgatgtaaagttagtgggatctatttaattactttttgtcatgggagttctggttagtgtattgtcattagagtc 13282221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 101 - 176
Target Start/End: Original strand, 41438096 - 41438171
Alignment:
Q  101 ggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaata 176  Q
    |||||||||| |||  | ||| |||||||||||||||||||||||||   ||||||||||| ||||| ||||||||    
T  41438096 ggcaactaaccggtaccgcgtttaaaagaagtaataaaatatgtattatgtggtcccacttacaaaataagtaata 41438171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 41 - 164
Target Start/End: Complemental strand, 14523439 - 14523317
Alignment:
Q  41 gaagaaaaaatgagtctctattatgcaacggggaactatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaat 140  Q
    ||||||||||||||| | | ||| | |||| | |||||||||||||| | ||||||| || | ||||| |||||  ||||| ||||| || |||||||||    
T  14523439 gaagaaaaaatgagtttatgttaaggaacgagcaactatataaggactttctctctcctgagtaactatcgggtttcacgtttaaaa-aaataataaaat 14523341  T
Q  141 atgtattggttggtcccacttgca 164  Q
    ||||| |  || ||||||||||||    
T  14523340 atgtactactttgtcccacttgca 14523317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 5e-32; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 138 - 259
Target Start/End: Original strand, 4898156 - 4898278
Alignment:
Q  138 aatatgtattggttggtcccacttgcaaaagaagtaataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagt 237  Q
    |||||| | |||||||||||||||| ||||||||||||||||||||||| |||||| |||||||| ||||| ||  |||||||||| ||| |||||||||    
T  4898156 aatatgcactggttggtcccacttgtaaaagaagtaataaattatttttgtataataatgtaaagctagtgagacttatttaagtacttttcattggagt 4898255  T
Q  238 -ccttattagtgtattgtcattg 259  Q
     ||||||||||||||||||||||    
T  4898256 cccttattagtgtattgtcattg 4898278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 173 - 264
Target Start/End: Complemental strand, 31066423 - 31066332
Alignment:
Q  173 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 264  Q
    ||||||||| |||| ||||||||||||||||||||||||  |||||||||||||| ||||||| ||| |||||||||||||||||| |||||    
T  31066423 aataaattacttttgtataatgatgtaaagttagtgggacatatttaagtatttttcattggaatccatattagtgtattgtcattagagtc 31066332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 173 - 263
Target Start/End: Original strand, 565353 - 565443
Alignment:
Q  173 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagt 263  Q
    |||||||||||||| ||||||||| |||| ||||||| |  |||||||||| ||| || ||||||||||||||||||||||||||||||||    
T  565353 aataaattatttttttataatgatctaaatttagtggaacatatttaagtacttttcaatggagtccttattagtgtattgtcattggagt 565443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 39 - 176
Target Start/End: Original strand, 2552655 - 2552790
Alignment:
Q  39 aggaagaaaaaatgagtctctattatgcaacggggaactatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaa 138  Q
    |||||||||||||||||| |  ||| | |||||| |||||||||||||  | ||||||| | ||||||||||| ||| ||||| || |||||||| ||||    
T  2552655 aggaagaaaaaatgagtccccgttaaggaacgggtaactatataagga--ttctctctcctaggcaactaacgagtcccacgtttagaagaagtagtaaa 2552752  T
Q  139 atatgtattggttggtcccacttgcaaaagaagtaata 176  Q
    |||||||||   ||||||| |||  |||||||||||||    
T  2552753 atatgtattatgtggtcccgcttataaaagaagtaata 2552790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 173 - 284
Target Start/End: Complemental strand, 31046481 - 31046367
Alignment:
Q  173 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc---gagtc 269  Q
    ||||||||| |||| |||||||||||||||||||| |||  ||||||||||||||  |||| | ||| ||||||||||||||| || |||||   |||||    
T  31046481 aataaattacttttgtataatgatgtaaagttagtcggacatatttaagtattttttattgaaatccatattagtgtattgtctttagagtcattgagtc 31046382  T
Q  270 tttaatagctacttt 284  Q
     ||||||| ||||||    
T  31046381 cttaatagatacttt 31046367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 173 - 264
Target Start/End: Original strand, 4396221 - 4396312
Alignment:
Q  173 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 264  Q
    ||||||||| |||| ||||||||||||||||||||| |  ||||||||||||||| ||||  ||||||| ||||| || || ||||||||||    
T  4396221 aataaattacttttttataatgatgtaaagttagtgtggcctatttaagtatttttcattaaagtccttgttagtatactgccattggagtc 4396312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 298 - 372
Target Start/End: Complemental strand, 4740408 - 4740334
Alignment:
Q  298 ttataaataagtgatgtttacatgtatggtccatttaagaagtctctattagtagactaccattatggatgctct 372  Q
    ||||||||||||||||| ||||  |  ||||||||||| |||| ||||||||| |||||||||||||||||||||    
T  4740408 ttataaataagtgatgtgtacacatgaggtccatttaaaaagtttctattagtggactaccattatggatgctct 4740334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 174 - 264
Target Start/End: Complemental strand, 8517016 - 8516926
Alignment:
Q  174 ataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 264  Q
    ||||||||||||| | ||||||||||||| |||||| |  ||||||||||||||  |||||||| | | |||||||||||||||| |||||    
T  8517016 ataaattatttttgtttaatgatgtaaagatagtggaacatatttaagtattttttattggagttcatgttagtgtattgtcattagagtc 8516926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 214 - 263
Target Start/End: Complemental strand, 15958789 - 15958740
Alignment:
Q  214 tatttaagtattttccattggagtccttattagtgtattgtcattggagt 263  Q
    |||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  15958789 tatttaagtacttttcattggagtccttattagtgtattgtcattggagt 15958740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 102 - 176
Target Start/End: Complemental strand, 12883597 - 12883523
Alignment:
Q  102 gcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaata 176  Q
    |||||||||||||| ||||| ||||| ||||||||||||||||| |  ||| || ||||| ||||||||||||||    
T  12883597 gcaactaacgggtcccacgtttaaaaaaagtaataaaatatgtactatttgatctcacttacaaaagaagtaata 12883523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 173 - 264
Target Start/End: Complemental strand, 12883274 - 12883183
Alignment:
Q  173 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgta-ttgtcattggagtc 264  Q
    ||||||||||||||   ||||||| |||||| |||||| | |||||||||| ||| ||||||||| |||||||||||| || |||||||||||    
T  12883274 aataaattatttttgcttaatgatataaagtaagtggggtatatttaagtacttttcattggagt-cttattagtgtacttctcattggagtc 12883183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 173 - 261
Target Start/End: Complemental strand, 30313056 - 30312968
Alignment:
Q  173 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattgga 261  Q
    |||||||||||||| | ||||||||||||||||||| || ||  |||| |||||| ||||||||||  ||||||| ||||  |||||||    
T  30313056 aataaattatttttgtttaatgatgtaaagttagtgagacctgattaaatatttttcattggagtctatattagtatatttccattgga 30312968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 164
Target Start/End: Complemental strand, 15958995 - 15958862
Alignment:
Q  30 ctccattgaaggaagaaaaaatgagtctctattatgcaacggggaactatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaaga 129  Q
    |||||||| ||||||||||||||| || || ||| | |||||  ||||||||||||||   || |||| || | ||||||||| || ||||| ||||| |    
T  15958995 ctccattggaggaagaaaaaatgaatccctgttaagaaacggacaactatataaggaccatctttctcttgagtaactaacggatcccacgtttaaaa-a 15958897  T
Q  130 agtaataaaatatgtattggttggtcccacttgca 164  Q
    ||||||||||| |||| |  |||||| ||||||||    
T  15958896 agtaataaaatgtgtactacttggtctcacttgca 15958862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 173 - 238
Target Start/End: Complemental strand, 30350476 - 30350411
Alignment:
Q  173 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtc 238  Q
    |||||||||||||| | ||||||||||||||||||| || ||  |||| |||||| ||||||||||    
T  30350476 aataaattatttttgtttaatgatgtaaagttagtgagacctgattaaatatttttcattggagtc 30350411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 176 - 250
Target Start/End: Original strand, 2553196 - 2553270
Alignment:
Q  176 aaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgta 250  Q
    |||||||||||   |||||||||||||||||||  || |||||||||| ||| || || | ||||||||||||||    
T  2553196 aaattatttttggttaatgatgtaaagttagtgaaatatatttaagtacttttcactgaaatccttattagtgta 2553270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 176
Target Start/End: Original strand, 4395654 - 4395727
Alignment:
Q  103 caactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaata 176  Q
    ||||||||  ||| ||||| ||||||||||||||||| |||||||  |||||  ||  ||||||||||||||||    
T  4395654 caactaacatgtctcacgtttaaaagaagtaataaaacatgtattaattggtttcatctgcaaaagaagtaata 4395727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 565002 - 565057
Alignment:
Q  1 ttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtct 57  Q
    ||||||||||||||| ||| || | ||| | ||||||||||||||||||||||||||    
T  565002 ttaacaaggaccactccccgttgaggactc-ccattgaaggaagaaaaaatgagtct 565057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 32 - 176
Target Start/End: Original strand, 175210 - 175354
Alignment:
Q  32 ccattgaaggaagaaaaaatgagtctctattatgcaacggggaactatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaag 131  Q
    |||||| ||||||||||||||||| || |||| | |||| | |||||||||||| |   ||||||| |  ||||||||  |||  ||||| |||||||||    
T  175210 ccattgtaggaagaaaaaatgagtttccattaaggaacgagcaactatataagggccctctctctcctaagcaactaataggtttcacgtttaaaagaag 175309  T
Q  132 taataaaatatgtattggttggtcccacttgcaaaagaagtaata 176  Q
    |||||||||||||| |  ||| |||||||  ||||||||||||||    
T  175310 taataaaatatgtactatttgatcccactaccaaaagaagtaata 175354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0568 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0568
Description:

Target: scaffold0568; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 180 - 284
Target Start/End: Complemental strand, 833 - 726
Alignment:
Q  180 tatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc---gagtctttaata 276  Q
    ||||||| | ||||||||||||| |||||||  ||||||||||| ||| |||| ||||||||||||||||| |   |||||||||   ||||| ||||||    
T  833 tatttttgtttaatgatgtaaagatagtggggcctatttaagtacttttcatttgagtccttattagtgtactcctattggagtcattgagtccttaata 734  T
Q  277 gctacttt 284  Q
    ||||||||    
T  733 gctacttt 726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 175 - 250
Target Start/End: Complemental strand, 33317 - 33242
Alignment:
Q  175 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgta 250  Q
    |||||||||||||| ||||||||||||| ||||| || ||||||||||| ||| ||||| ||||||| | ||||||    
T  33317 taaattatttttatttaatgatgtaaagatagtgagacctatttaagtacttttcattgaagtccttgtaagtgta 33242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 172
Target Start/End: Complemental strand, 33708 - 33569
Alignment:
Q  32 ccattgaaggaagaaaaaatgagtctctattatgcaacgggg-aactatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaa 130  Q
    |||||| |||||||||||||||||| | |||| | |||||   ||||||| ||||||   |||||||||  |||||||||||||   |||| ||||||||    
T  33708 ccattggaggaagaaaaaatgagtccccattaaggaacggaacaactatagaaggact--ctctctcataagcaactaacgggttcaacgtttaaaagaa 33611  T
Q  131 gtaataaaatatgtattggttggtcccacttgcaaaagaagt 172  Q
    ||||||||||||| | |  || |||||| || ||||||||||    
T  33610 gtaataaaatatgcactatttagtcccatttacaaaagaagt 33569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 175 - 252
Target Start/End: Complemental strand, 11567 - 11490
Alignment:
Q  175 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtatt 252  Q
    |||||||||||| | ||||||||||||| |  |||||  |||||||||| ||| |||| |||||||||||||| ||||    
T  11567 taaattatttttgtttaatgatgtaaagattatgggacatatttaagtacttttcatttgagtccttattagtatatt 11490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University