View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11069A_low_4 (Length: 579)
Name: NF11069A_low_4
Description: NF11069A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11069A_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 339; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 23 - 380
Target Start/End: Complemental strand, 31225635 - 31225277
Alignment:
| Q |
23 |
ccaacacaacaggccttgctaatgcaacacagcagctgcacaggaaaaaacaacaagtgttgtttgaacccacaaaatagcccccaaaaactcagcagcg |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31225635 |
ccaacacaacaggccttgctaatgcaacacagcagctgcacaggaaaaaacagcaagtgttgtttgaacccacaaaatagcccccaaaaactcagcagcg |
31225536 |
T |
|
| Q |
123 |
aacaccaacaaccgacagaaacccgacaccagaaaaactgcagaacaccgcatcacccaacacataacagcaccggatcagcttaagccattcgcaaaag |
222 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31225535 |
aacaccaacaaccgacagaaacccgacaccaaaaaaactgcagaacaccgcatcacccaacacataacagcaccggatcagcttaagccattcgcaaaag |
31225436 |
T |
|
| Q |
223 |
acactcccttgggttccaacaccatttgaagtacatacac-ggggaatattaattctaaccaaagcccaccgccacgacaacaccttgatttcatccaca |
321 |
Q |
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||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31225435 |
acactcccttgggttccaaaaccatttgaagtacatacacgggggaatattaattctaaccaaagcccaccgccacgacaacaccttgatttcatccaca |
31225336 |
T |
|
| Q |
322 |
atttctcccacatccagatttcggttattaaaaagactaacatgtgaaatacatatatt |
380 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31225335 |
atttctcccacatccagatttcggttattaaaaagactaacatgtgaaatacatatatt |
31225277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 406 - 579
Target Start/End: Complemental strand, 31225259 - 31225086
Alignment:
| Q |
406 |
acttattatataaatacaaaccctcgtgatctatggtttcatagtttcaaagtatcaagaaaccttccctttgaaacatcattacaacaaaggaattcaa |
505 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31225259 |
acttattatataaatacaaaccctcgtgatctatggtttcatagtttcaaagtatcaagaaaccttccctttgaaacatcattacaacaaaggaattcaa |
31225160 |
T |
|
| Q |
506 |
gaaattccctaaagctaaactccttgtaagacataggatgttgatcatcaacaagttcaagtgctggacctatc |
579 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
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|
| T |
31225159 |
gaaattccctaaagctaaactccttgtaagacatagggtgttgatcatcaacaagttcaagtgcaggacctatc |
31225086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 215 - 355
Target Start/End: Complemental strand, 35400914 - 35400773
Alignment:
| Q |
215 |
cgcaaaagacactcccttgggttccaacaccatttgaagtacatacacgg-ggaatattaattctaaccaaagcccaccgccacgacaacaccttgattt |
313 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| | | ||||||||||| || ||| |||||| |||||||||| | ||| ||||| ||||||| | |
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|
| T |
35400914 |
cgcaaaatacactcccttgggttccaacaccattcgtaatacatacacggtggcatagagattctatccaaagcccatctccaagacaaaaccttgacat |
35400815 |
T |
|
| Q |
314 |
catccacaatttctcccacatccagatttcggttattaaaaa |
355 |
Q |
| |
|
||||||| ||||| ||||||| | |||||||||||||||||| |
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|
| T |
35400814 |
catccaccatttcacccacatacggatttcggttattaaaaa |
35400773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 68 - 208
Target Start/End: Original strand, 41310269 - 41310408
Alignment:
| Q |
68 |
aaaaacaacaagtgttgtttgaacccacaaaatagcccccaaaaactcagcagcgaacaccaacaaccgacagaaacccgacaccagaaaaactgcagaa |
167 |
Q |
| |
|
||||||| || ||| ||||||||||| |||| |||||||||||||||||||| ||||| ||| ||| ||||||| ||| || || | ||||||||| | |
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| T |
41310269 |
aaaaacagcaggtgctgtttgaacccgcaaaggagcccccaaaaactcagcagagaacagcaa-aactgacagaataccggcagcaaagaaactgcagta |
41310367 |
T |
|
| Q |
168 |
caccgcatcacccaacacataacagcaccggatcagcttaa |
208 |
Q |
| |
|
||||||| ||||||||||| ||||||||||| || ||||| |
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|
| T |
41310368 |
caccgcagcacccaacacaggacagcaccggagcaacttaa |
41310408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 215 - 321
Target Start/End: Complemental strand, 24189687 - 24189580
Alignment:
| Q |
215 |
cgcaaaagacactcccttgggttccaacaccatttgaagtacatacacgg-ggaatattaattctaaccaaagcccaccgccacgacaacaccttgattt |
313 |
Q |
| |
|
||||||||||| ||||||||| ||| ||||||| ||||||||||||| || ||| |||||| |||||| ||| ||||||||||| |||||||| | |
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|
| T |
24189687 |
cgcaaaagacattcccttgggcaccagcaccattcatagtacatacacggaggcatagagattctatccaaagaccatcgccacgacaagaccttgatgt |
24189588 |
T |
|
| Q |
314 |
catccaca |
321 |
Q |
| |
|
|||||||| |
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|
| T |
24189587 |
catccaca |
24189580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 355
Target Start/End: Complemental strand, 11780162 - 11780037
Alignment:
| Q |
231 |
ttgggttccaacaccatttgaagtacatacacgggga-atattaattctaaccaaagcccaccgccacgacaacaccttgatttcatccacaatttctcc |
329 |
Q |
| |
|
||||| ||||| |||||| ||||||||||||||| ||| |||||| |||||| ||| ||||||||| | ||||| || || |||||||||||| | |
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|
| T |
11780162 |
ttgggctccaaaaccattcatagtacatacacgggggcatagaaattctgtccaaagaccaacgccacgaccaaaccttaatctcctccacaatttcttc |
11780063 |
T |
|
| Q |
330 |
cacatccagatttcggttattaaaaa |
355 |
Q |
| |
|
||||||| |||| ||| |||||||| |
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|
| T |
11780062 |
cacatccggattccggccattaaaaa |
11780037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 353
Target Start/End: Original strand, 42748719 - 42748860
Alignment:
| Q |
213 |
ttcgcaaaagacactcccttgggttccaacaccatttgaagtacatacacgggga-atattaattctaaccaaagcccaccgccacgacaacaccttgat |
311 |
Q |
| |
|
||||||||||||| ||| |||| ||||||||||||| |||||| |||||| || ||| ||| | | |||||| ||| |||||||| | |||||| || |
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|
| T |
42748719 |
ttcgcaaaagacattcctttggattccaacaccattcatagtacaaacacggcgatataagaatacgatccaaagaccaacgccacgatatcacctttat |
42748818 |
T |
|
| Q |
312 |
ttcatccacaatttctcccacatccagatttcggttattaaa |
353 |
Q |
| |
|
||||||||||| || ||||| ||| | |||| |||||||| |
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|
| T |
42748819 |
ctcatccacaatctcgcccacctccgtaattcgattattaaa |
42748860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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