View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11069A_low_40 (Length: 381)
Name: NF11069A_low_40
Description: NF11069A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11069A_low_40 |
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Alignment Details
Target: chr3 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 7 - 375
Target Start/End: Original strand, 29056156 - 29056524
Alignment:
| Q |
7 |
aagattaccctcaggagttggtgccaaactgtcataaggtacaaccacttcatcagtaggcgtttggatcttactccactcaacatactgtgcttctcca |
106 |
Q |
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| T |
29056156 |
aagattaccctcaggagttggtgccaaactgtcataaggtacaaccacttcatcagtaggcgtttggatcttactccactcaacatgctgtgcttctcca |
29056255 |
T |
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| Q |
107 |
cttcgatcaatgacccatgcattgaaaaaacaatcatgaaaccaataacaaatataaagagcctgtttttacggcatattttgtaaaaaacaataatgaa |
206 |
Q |
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| T |
29056256 |
cttcgatcaatgacccatgcattgaaaaaacaatcatgaaaccaataacaaatataaagagcctgtttttacggcatattttgtaaaaaacaataatgaa |
29056355 |
T |
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| Q |
207 |
accaacaacaaatataaagagcctgtttgttacagcttatattgtacaaaatcacttttcaaaattttcatccatttgttgcagattcttacaaaaatga |
306 |
Q |
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| T |
29056356 |
accaacaacaaatataaagagcctgtttgttacagcttatattgtacaaaatcacttttcaaaattttcatccatttgttgcagattcttacaaaaatga |
29056455 |
T |
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| Q |
307 |
gaatctgaaaataatttaaaaaatgtttcaaatgagaaactgtttcaagtagcttctgagaataatcta |
375 |
Q |
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| T |
29056456 |
gaatctgaaaataatttaaaaaatgtttcaaatgagaaactgtttcaagtagcttctgagaataatcta |
29056524 |
T |
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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 108
Target Start/End: Complemental strand, 32848826 - 32848736
Alignment:
| Q |
18 |
caggagttggtgccaaactgtcataaggtacaaccacttcatcagtaggcgtttggatcttactccactcaacatactgtgcttctccact |
108 |
Q |
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| T |
32848826 |
caggagttggcgccaaagtatcataaggcacaacaacttcatcagttggcgtctggatcttactccattctacatgctgcgcttcaccact |
32848736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 271 - 340
Target Start/End: Complemental strand, 2811322 - 2811253
Alignment:
| Q |
271 |
ttttcatccatttgttgcagattcttacaaaaatgagaatctgaaaataatttaaaaaatgtttcaaatg |
340 |
Q |
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| T |
2811322 |
ttttcatctgtttgttacaaattcttaaaaaattgagaatctgaaaataatctaaaaactgtttcaaatg |
2811253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 256 - 350
Target Start/End: Complemental strand, 21479629 - 21479534
Alignment:
| Q |
256 |
aatcacttttcaaaatttt-catccatttgttgcagattcttacaaaaatgagaatctgaaaataatttaaaaaatgtttcaaatgagaaactgtt |
350 |
Q |
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| T |
21479629 |
aatcacttttaagaattttgcatccatttgttacagctttttaaaaaaatcagaatctaaaaaaaatctaaaaacagcttcaaatgagaagctgtt |
21479534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 350
Target Start/End: Complemental strand, 42429792 - 42429723
Alignment:
| Q |
281 |
tttgttgcagattcttacaaaaatgagaatctgaaaataatttaaaaaatgtttcaaatgagaaactgtt |
350 |
Q |
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| T |
42429792 |
tttgttacagctttttaaaaaaatcagaatctaaaaataatctaaaaacagtttcaaatgagaagctgtt |
42429723 |
T |
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