View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11069A_low_42 (Length: 378)
Name: NF11069A_low_42
Description: NF11069A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11069A_low_42 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 24 - 378
Target Start/End: Complemental strand, 12844054 - 12843700
Alignment:
| Q |
24 |
tccgccaccttcaataccttcgccgcaaccgtaatctccgtaaccgtaatctcgttgtcggccttggcgttcaatggactcccggcaaccttgatcctcc |
123 |
Q |
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| T |
12844054 |
tccgccaccttcaataccttcgccgcaaccgtaatctctgtaaccgtaatctcattgtcggccttggcgttcaatggactcccggcaaccttgatcctcc |
12843955 |
T |
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| Q |
124 |
cgccgacacgctacagttatgcatcagtggcagctgtcttatcttccacctctctcgcgcagatatgattccggtcagtctctgcaattttctccgtcat |
223 |
Q |
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| T |
12843954 |
cgccgacacgctacagttatgcatcagtggcagctgtcttatcttccacctctctctcgccgatatgattccggttagtctctgcaactttctccgtcat |
12843855 |
T |
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| Q |
224 |
cctaagaacaccttcgttggattctggaacgctgctgatcgtagaaggctggagagatttgatcatcgcttgcaaatgtggaaagatcctcaggatctga |
323 |
Q |
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| T |
12843854 |
cctaagaacaccttcgttggattctggaacgctgctgatcgtagaaggctggagagatttgatcatcgcttgcaaatgtggaaagatcctcaggatctga |
12843755 |
T |
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| Q |
324 |
ggcattacaggttcaatggtgaaaatctttcacgtgaatcgatgaatgtaattgt |
378 |
Q |
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| T |
12843754 |
ggcattacaggttcaatggtgaaaatctttcacgtgaatcgataaatgtaattgt |
12843700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 59 - 378
Target Start/End: Original strand, 12861462 - 12861781
Alignment:
| Q |
59 |
ctccgtaaccgtaatctcgttgtcggccttggcgttcaatggactcccggcaaccttgatcctcccgccgacacgctacagttatgcatcagtggcagct |
158 |
Q |
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| T |
12861462 |
ctccgcaactgtaatcttgttgtcggcctcggcgttcaatggactaaccgcaaccttgatcctcccgccgacacgctacagttatgcatcggtggcagct |
12861561 |
T |
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| Q |
159 |
gtcttatcttccacctctctcgcgcagatatgattccggtcagtctctgcaattttctccgtcatcctaagaacaccttcgttggattctggaacgctgc |
258 |
Q |
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| T |
12861562 |
gtcttatcttccacctctctcgcgcagatatgattccggtcagtctctgcaattttctccgtcatcctaagaacaccttcgttggattctggaacgctgc |
12861661 |
T |
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| Q |
259 |
tgatcgtagaaggctggagagatttgatcatcgcttgcaaatgtggaaagatcctcaggatctgaggcattacaggttcaatggtgaaaatctttcacgt |
358 |
Q |
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| T |
12861662 |
agatcgtaggaagctggagagatttgatcatcgcttgcaaatgtggaaaaatcctcaggatttgaggaattacgagttcaatggtgaagctctttcacgt |
12861761 |
T |
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| Q |
359 |
gaatcgatgaatgtaattgt |
378 |
Q |
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| T |
12861762 |
ttatcgatggatgaaattgt |
12861781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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