View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11069A_low_44 (Length: 375)
Name: NF11069A_low_44
Description: NF11069A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11069A_low_44 |
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Alignment Details
Target: chr2 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 360
Target Start/End: Complemental strand, 16353300 - 16352941
Alignment:
| Q |
1 |
actcatcgaaggggaactccaaatactgctcaaagcatcttggtttgacaaaggactactacctttcaatgactttttctcatcaaatctactagttgtc |
100 |
Q |
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| T |
16353300 |
actcatcgaaggggaactccaaatactgctcaaagcatcttggtttgacaaaggactactacctttcaatgactttttctcatcaaatctactagttttc |
16353201 |
T |
|
| Q |
101 |
gcctttgcagtgagccttttcgcaagcgaagccaaatccacaggcgaaacatcggcttgtagaattgaataaggtagcatgaagtaaacatttcctggtt |
200 |
Q |
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| T |
16353200 |
gcctttgcagtgagccttttcgcaagcgaagccaaatccacaggcgaaacatcggcttgtagaattgaataaggtagcatgaagtaaacatttcctggtt |
16353101 |
T |
|
| Q |
201 |
gaagttgtgtatctcctttcaatggttttgaagaagatgaaagaagttgaagggaggtacaaacaaagtgagttggtggatttctactattgatcacttg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16353100 |
gaagttgtgtatctcctttcaatggttttgaagaagatgaaagaagttgaagggaggtacaaacaaagtgagttggtggatttctactattgatcacttg |
16353001 |
T |
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| Q |
301 |
gttaactgaaattggttgctcaaaatcctctacatagccacttagatgaaccaaacggat |
360 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16353000 |
gttaactgaaattggttgctcaaaatcctctacatagccacttagatgaaccaaacggat |
16352941 |
T |
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