View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11069A_low_45 (Length: 375)
Name: NF11069A_low_45
Description: NF11069A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11069A_low_45 |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 7 - 313
Target Start/End: Original strand, 11107122 - 11107423
Alignment:
| Q |
7 |
gtgaggtcaattctggagtttggcctaatttactaccttgaaggatcttttctcaatttagtcccaannnnnnnattttatggtgatttagttttctaat |
106 |
Q |
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| T |
11107122 |
gtgaggtcaattctggagtttggcctcatttattaccttgaaggatcttttctcaatttagtcccaatttttt-attttatggtgatttagttttttaat |
11107220 |
T |
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| Q |
107 |
tatttcttatgtgtgtgaagatacaatcgtaattcattacgttgtaatcttgatttagtcccaattctggtgcttaattatttgaataaaaaatcactat |
206 |
Q |
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| T |
11107221 |
tatttcttatgtgtgtgaagatacaatcgtaattcattacgttgtaatcttgatttagtcccaattctggtgc----gtatttgaataaaaaatcactat |
11107316 |
T |
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| Q |
207 |
ttcttaagttctatgtactggtttacttgaataaaaaatctaacatgtatgttgctgctttcaatgcttttttcgtaatcattaattttagctactaaca |
306 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
11107317 |
ttcttaagttctatgtactggtttacttgaatcaaaaatctaacatgtatgttgctgctttcaatgcttttgtcgtaatcattaattttagctactaaca |
11107416 |
T |
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| Q |
307 |
taactgg |
313 |
Q |
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||||||| |
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| T |
11107417 |
taactgg |
11107423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 196 - 307
Target Start/End: Original strand, 11096438 - 11096546
Alignment:
| Q |
196 |
aaaatcactatttcttaagttctatgtactggtttacttgaataaaaaatctaacatgtatgttgctgctttcaatgcttttttcgtaatcattaatttt |
295 |
Q |
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| T |
11096438 |
aaaatcacttttgcttaagctctatgtactggtttacttgaataaaaaatctaattggtgtgt---tgctttcaatgcttttgtcataatcattaatttt |
11096534 |
T |
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| Q |
296 |
agctactaacat |
307 |
Q |
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| T |
11096535 |
agctactaacat |
11096546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 7 - 69
Target Start/End: Original strand, 11100297 - 11100359
Alignment:
| Q |
7 |
gtgaggtcaattctggagtttggcctaatttactaccttgaaggatcttttctcaatttagtc |
69 |
Q |
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| T |
11100297 |
gtgaggtcaattctggagtttggcctgatttattaccttgaaggatcttttctcaatttagtc |
11100359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 118 - 163
Target Start/End: Original strand, 11096339 - 11096384
Alignment:
| Q |
118 |
tgtgtgaagatacaatcgtaattcattacgttgtaatcttgattta |
163 |
Q |
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| T |
11096339 |
tgtgtgaagatacaatcgtaattcattacgatgtaatcttggttta |
11096384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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