View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11069A_low_48 (Length: 368)
Name: NF11069A_low_48
Description: NF11069A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11069A_low_48 |
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Alignment Details
Target: chr2 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 10 - 363
Target Start/End: Original strand, 15170558 - 15170911
Alignment:
| Q |
10 |
atgagacttgtaatcctagccttcttcttccgtttccgtatcttaacaccagcatatgatgcataccctttatggctcatatcagtaatatgtgaaatat |
109 |
Q |
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| T |
15170558 |
atgagacttgtaatcctagcattcttcttccgtttccgtatcttaacaccagcatatgatgcataccctttatggctcatatcagtaatatgtgaaatat |
15170657 |
T |
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| Q |
110 |
ggtttgcattatcatggatacttgatcaatttccaaaatggttaccaatcacacgtgaaacttacttagaccgtttatctataagatttgaacgtgaagg |
209 |
Q |
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| T |
15170658 |
ggtttgcattatcatggatacttgatcagtttccaaaatggttaccaatcacacgtgaaacatatttagaccgtttatctataagatttgaacgtgaagg |
15170757 |
T |
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| Q |
210 |
tgaaccaaaccagctttcgcctgttgatgtttttgttagttctgttgatcctttgaaagaaccacctattataacagcaaacactgttctttccatactt |
309 |
Q |
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| T |
15170758 |
cgaaccaaaccagctttcacctgttgatgtttttgttagttctgttgatcctttgaaagaaccacctattataacagcaaacactgttctttccatactt |
15170857 |
T |
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| Q |
310 |
tctgttgactaccctgttgagaaagtcacatgctatgtatcagatgatggtgct |
363 |
Q |
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| T |
15170858 |
tctgttgactaccctgttgagaaagtcacatgctatgtatcagatgatggtgct |
15170911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 364
Target Start/End: Complemental strand, 5128978 - 5128834
Alignment:
| Q |
220 |
cagctttcgcctgttgatgtttttgttagttctgttgatcctttgaaagaaccacctattataacagcaaacactgttctttccatactttctgttgact |
319 |
Q |
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| T |
5128978 |
cagcttgctcctgtggatttctttgtcagtacggttgatccgttgaaagaaccgccgttgatcactgccaacacagttctttctatccttgccgtggact |
5128879 |
T |
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| Q |
320 |
accctgttgagaaagtcacatgctatgtatcagatgatggtgctg |
364 |
Q |
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| T |
5128878 |
atcctgtggaaaaagtatcatgttatgtttcagatgatggtgctg |
5128834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 6e-22; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 231 - 364
Target Start/End: Complemental strand, 38721208 - 38721075
Alignment:
| Q |
231 |
tgttgatgtttttgttagttctgttgatcctttgaaagaaccacctattataacagcaaacactgttctttccatactttctgttgactaccctgttgag |
330 |
Q |
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| T |
38721208 |
tgttgatgtctttgtcagtactgttgatcctatgaaagaacctccactgatcacagcaaacactgttctatctatccttgctgttgactatccagttgat |
38721109 |
T |
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| Q |
331 |
aaagtcacatgctatgtatcagatgatggtgctg |
364 |
Q |
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| T |
38721108 |
aaagttgcatgctatgtttcggatgatggtgctg |
38721075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 90 - 151
Target Start/End: Complemental strand, 38721452 - 38721391
Alignment:
| Q |
90 |
atcagtaatatgtgaaatatggtttgcattatcatggatacttgatcaatttccaaaatggt |
151 |
Q |
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| T |
38721452 |
atcagtcatatgtgaaatatggtttgctgtatcttggataatggatcagtttccaaaatggt |
38721391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 259 - 356
Target Start/End: Original strand, 30257080 - 30257177
Alignment:
| Q |
259 |
cctttgaaagaaccacctattataacagcaaacactgttctttccatactttctgttgactaccctgttgagaaagtcacatgctatgtatcagatga |
356 |
Q |
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| T |
30257080 |
cctttgaaggaaccacctattataacagcaaacacagttctatcaatcttatctgttgattatcctgttgacaaagtaagctgctatgtatcagatga |
30257177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 90 - 151
Target Start/End: Complemental strand, 44377886 - 44377825
Alignment:
| Q |
90 |
atcagtaatatgtgaaatatggtttgcattatcatggatacttgatcaatttccaaaatggt |
151 |
Q |
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| T |
44377886 |
atcagtaatatgtgaaatttggtttgctgtatcatggattttggatcagtttccaaaatggt |
44377825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 265 - 360
Target Start/End: Complemental strand, 49592301 - 49592206
Alignment:
| Q |
265 |
aaagaaccacctattataacagcaaacactgttctttccatactttctgttgactaccctgttgagaaagtcacatgctatgtatcagatgatggt |
360 |
Q |
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| T |
49592301 |
aaagagccacctattgtaactgcaaacactgttttgtctatacttgccgttgattaccctgtcgacaaggtttcttgctatgtatctgatgatggt |
49592206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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