View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11069A_low_49 (Length: 368)
Name: NF11069A_low_49
Description: NF11069A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11069A_low_49 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 8 - 362
Target Start/End: Original strand, 38356047 - 38356402
Alignment:
| Q |
8 |
aatactgccatgtatgactcaaactttgtgtcttacaaacaattacaattaacc-atatagtgttatatttcaatagattcctcatgaattaaaattgac |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38356047 |
aatactgccatgtatgactcaaactttgtgtcttacaaacaattacaattaacccatatagtgttatatttcaatagattcctcatgaattaaaattgac |
38356146 |
T |
|
| Q |
107 |
ccgtgtaaccatcaaccctgacttggttcttttcataatttgtctacctttatcttctttattatacgttgaaataagaacatgcacctgtccataacag |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38356147 |
ccgtgtaaccatcaaccctgacttggttcttttcataatttgtctacctttatcttctttattatacgttgaaataagaacatgcacctgtccataacag |
38356246 |
T |
|
| Q |
207 |
gtttttcaaattgtgtggttctcaagcaactatttacaatatgacagcatgtggacccnnnnnnnntcttacactgctgagtcagtttaaagcatagcct |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
38356247 |
gtttttcaaattgtgtggttctcaagcaactatttacaatatgacagcatgtggacccaaaaaaaatcttacactgctgagtcagtttaaagcatagcct |
38356346 |
T |
|
| Q |
307 |
cataaattaagccaatttgatgaaaaaataaaattttcagtgatatatctatagga |
362 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
38356347 |
cataaattaagccaatttgatggaaaaataaaattttcagtgatatatctatagga |
38356402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University