View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11069A_low_5 (Length: 539)
Name: NF11069A_low_5
Description: NF11069A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11069A_low_5 |
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| [»] scaffold0054 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-131; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 235 - 504
Target Start/End: Complemental strand, 23194096 - 23193832
Alignment:
| Q |
235 |
caaaaccaaactcaaaataaagcaactaaccatcatcgaaatttgtaactttctaaagaagtcttcttgatacaccttgacattaatacagtttgaattt |
334 |
Q |
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||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||| |||||||||| |
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| T |
23194096 |
caaaaccaaactcaaaataaagcaactaaccatcatctaaatctgtaactttctaaagaagtcttgttgatacaccttgacatta-----gtttgaattt |
23194002 |
T |
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| Q |
335 |
caacatttaattcagatgaggagaaggaagagctggagcatagttttccttatagagaagaggttggaaatttccatcccataaggtatgaggaggagga |
434 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23194001 |
caacatttaattcagatgaggagaaggaagagctggagcatagttttccttatagagaagaggttggaaatttccatcccataaggtatgaggaggagga |
23193902 |
T |
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| Q |
435 |
gatggaatgatgtccctataaagaagagggttcaaatctccattcaatgaagtaatgttaaacttgcttc |
504 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23193901 |
gatggaatgatgtccctataaagaagagggttcaaatctccattcaatgaagtaatgttaaacttgcttc |
23193832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 13 - 241
Target Start/End: Complemental strand, 23203042 - 23202814
Alignment:
| Q |
13 |
agcttgacatcctagctaggttgagatcctaaattcattacctatcatttgcaacatcctaacaaatttattgataaataaagaaatacaaaatatatct |
112 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23203042 |
agcttgacatcctaactaggttgagatcctaaattcattacctatcatttgcaacatcctaacaaatttattgataaataaagaaatacaaaatatatct |
23202943 |
T |
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| Q |
113 |
ccaaaacccaagaaaactacaaagaatttggacaactgcctcgttaaaaatcttaacaagaaaatctagtaagataaaacctcatgaaggaaaagagtgt |
212 |
Q |
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| T |
23202942 |
ccaaaacccaagaaaactacaaagaatttggaaaactgcctcgttaaaaatcttatcaagaaaacctagtaggataaaacctcatgaaggtaaagagttt |
23202843 |
T |
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| Q |
213 |
gattcaataacaagactaacaacaaaacc |
241 |
Q |
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| T |
23202842 |
gattcaataacacgactaacaacaaaacc |
23202814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 428 - 465
Target Start/End: Original strand, 37027667 - 37027704
Alignment:
| Q |
428 |
aggaggagatggaatgatgtccctataaagaagagggt |
465 |
Q |
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| T |
37027667 |
aggaggagatggaatgttgtccctatagagaagagggt |
37027704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 111; Significance: 9e-56; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 193 - 394
Target Start/End: Complemental strand, 32254973 - 32254776
Alignment:
| Q |
193 |
ctcatgaaggaaaagagtgtgattcaataacaagactaacaacaaaaccaaactcaaaataaagcaactaaccatcatcgaaatttgtaactttctaaag |
292 |
Q |
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||||||||| ||||||||| |||||||||| || |||||| ||||||||||||||||| ||||||||||||||| |||| | ||||||||||||| |
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| T |
32254973 |
ctcatgaagaaaaagagtgcaattcaataactag-----caacaagaccaaactcaaaataaaacaactaaccatcatctaaatctataactttctaaag |
32254879 |
T |
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| Q |
293 |
aagtcttctt-gatacaccttgacattaatacagtttgaatttcaacatttaattcagatgaggagaaggaagagctggagcatagttttccttatagag |
391 |
Q |
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|||| ||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| | ||||||||||| |
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| T |
32254878 |
aagttttctttgatacaccttgatattaatacagtttgaatttcaacatttaattaggatgaggagaaggaagagctggaacatagctgtccttatagag |
32254779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 318 - 492
Target Start/End: Complemental strand, 32236403 - 32236235
Alignment:
| Q |
318 |
taatacagtttgaatttcaacatttaattcagatgaggagaaggaagagctggagcatagttttccttatagagaagaggttggaaatttccatcccata |
417 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||| |
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| T |
32236403 |
taatacaaattgaatttcaacatttaattcagatgaggagaaggaagagctggaacatagttgtccttatagagaagagggtggaaatttccatcccatg |
32236304 |
T |
|
| Q |
418 |
aggtatgaggaggaggagatggaatgatgtccctataaagaagagggttcaaatctccattcaatgaagtaatgt |
492 |
Q |
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|||| || ||||||||||||| ||||| ||| |||||||| || ||| ||| |||||||| ||||||| |
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| T |
32236303 |
aggt------agaaggagatggaatgttgtccttattgagaagaggtttggaatttcccttcaatgaggtaatgt |
32236235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 318 - 492
Target Start/End: Complemental strand, 32248597 - 32248429
Alignment:
| Q |
318 |
taatacagtttgaatttcaacatttaattcagatgaggagaaggaagagctggagcatagttttccttatagagaagaggttggaaatttccatcccata |
417 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||| |
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| T |
32248597 |
taatacaaattgaatttcaacatttaattcagatgaggagaaggaagagctggaacatagttgtccttatagagaagagggtggaaatttccatcccatg |
32248498 |
T |
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| Q |
418 |
aggtatgaggaggaggagatggaatgatgtccctataaagaagagggttcaaatctccattcaatgaagtaatgt |
492 |
Q |
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|||| || ||||||||||||| ||||| ||| |||||||| || ||| ||| |||||||| ||||||| |
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| T |
32248497 |
aggt------agaaggagatggaatgttgtccttattgagaagaggtttggaatttcccttcaatgaggtaatgt |
32248429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 381 - 503
Target Start/End: Complemental strand, 32254729 - 32254610
Alignment:
| Q |
381 |
tccttatagagaagaggttggaaatttccatcccataaggtatgaggaggaggagatggaatgatgtccctataaagaagagggttcaaatctccattca |
480 |
Q |
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||||||||||||||||| |||||||||||||||||| ||| |||||||||| ||||||||| ||||| |||| ||||||||||| |||||||||||| |
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| T |
32254729 |
tccttatagagaagagggtggaaatttccatcccat---gtaggaggaggaggggatggaatgttgtccttatagagaagagggttggaatctccattca |
32254633 |
T |
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| Q |
481 |
atgaagtaatgttaaacttgctt |
503 |
Q |
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|||| ||||||| ||| |||||| |
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| T |
32254632 |
atgaggtaatgtcaaagttgctt |
32254610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 16 - 103
Target Start/End: Complemental strand, 32255107 - 32255022
Alignment:
| Q |
16 |
ttgacatcctagctaggttgagatcctaaattcattacctatcatttgcaacatcctaacaaatttattgataaataaagaaatacaa |
103 |
Q |
| |
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||||||||||| || ||||| | || ||||||| |||||||||||||||||| |||||||||||||||| | |||||||||||||| |
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| T |
32255107 |
ttgacatcctaattaagttgacacccaaaattcactacctatcatttgcaacaccctaacaaatttattg--acataaagaaatacaa |
32255022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 180 - 251
Target Start/End: Complemental strand, 32248717 - 32248643
Alignment:
| Q |
180 |
agtaagataaaacctcatgaaggaaaagagtgtgattcaataacaagact---aacaacaaaaccaaactcaaaa |
251 |
Q |
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|||| |||||| ||||| ||||||| |||||| |||||||||||| ||| |||||||| ||||||||||||| |
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| T |
32248717 |
agtaggataaatcctcacgaaggaatagagtgcaattcaataacaaaactagcaacaacaagaccaaactcaaaa |
32248643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 144 - 206
Target Start/End: Original strand, 21847752 - 21847814
Alignment:
| Q |
144 |
acaactgcctcgttaaaaatcttaacaagaaaatctagtaagataaaacctcatgaaggaaaa |
206 |
Q |
| |
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||||||||||| ||||||| ||||||||||||||||| | ||||||||| | ||||||||||| |
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| T |
21847752 |
acaactgcctcattaaaaaccttaacaagaaaatctattgagataaaacttgatgaaggaaaa |
21847814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0054
Description:
Target: scaffold0054; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 146 - 206
Target Start/End: Original strand, 67671 - 67731
Alignment:
| Q |
146 |
aactgcctcgttaaaaatcttaacaagaaaatctagtaagataaaacctcatgaaggaaaa |
206 |
Q |
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||||| ||||||||||| ||||||||||||||| | || |||||||| | |||||||||| |
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| T |
67671 |
aactgtctcgttaaaaaccttaacaagaaaatccaataggataaaacttggtgaaggaaaa |
67731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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