View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11069A_low_52 (Length: 364)
Name: NF11069A_low_52
Description: NF11069A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11069A_low_52 |
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Alignment Details
Target: chr7 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 22 - 345
Target Start/End: Original strand, 3036513 - 3036837
Alignment:
| Q |
22 |
tcagagtagctcacttgttcaagaacgacgcataaaatctcagaatcaagaaattgatattgagcaagctttgaaggtttcgaatggaggaagaggatct |
121 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3036513 |
tcagagtagcttacttgttcaagaacgacgcataaaatctcagaatcaagaaattgatattgagcaagctttgaaggtttcgaatggaggaagaggatct |
3036612 |
T |
|
| Q |
122 |
atgggatttggtagaggaagagggcgttcaggtgctagaggaaagggtaggggaagaatcaacacagattctattgagtgttataagtgtcacgagctgg |
221 |
Q |
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||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |
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| T |
3036613 |
atgggatatggtagaggaagagggcattcaggtgctagaggaaagggtaggggaagaatcaacaaagattctattgagtgttataagtgtcacaagctgg |
3036712 |
T |
|
| Q |
222 |
gacactatcagaatgaatgtcccctatggg-gaaaaaatgcaaattatgctcaatttgaagatggtgaattgcttctgatggctcaatcatgcatgaaca |
320 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3036713 |
gacactatcagaatgaatgtcccctatgggaaaaaaaatgcaaattatgctcaatttgaagatggtgaattgcttctgatggctcaatcatgcatgaaca |
3036812 |
T |
|
| Q |
321 |
caaatgccaaagatgaggtatggtt |
345 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
3036813 |
caaatgccaaagatgaggtatggtt |
3036837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 153; Significance: 5e-81; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 34 - 345
Target Start/End: Original strand, 16863272 - 16863584
Alignment:
| Q |
34 |
acttgttcaagaacgacgcataaaatctcagaatcaagaaattgatattgagcaagctttgaaggtttcgaatggaggaagaggatctatgggatttggt |
133 |
Q |
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|||||||||||||| |||||| ||| |||| |||||||||||||||||||| ||||||||||||| || ||||| |||||||||||| | |||| |||| |
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| T |
16863272 |
acttgttcaagaacaacgcatgaaaactcaaaatcaagaaattgatattgaacaagctttgaaggcatctaatggtggaagaggatctgtaggatatggt |
16863371 |
T |
|
| Q |
134 |
agaggaagagggcgttcaggtgctagaggaaagggtaggggaagaatcaacacagattctattgagtgttataa-gtgtcacgagctgggacactatcag |
232 |
Q |
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|||||||||||||||||||||| |||||||| |||||| |||||||| |||| | | |||| || || || ||||||| |||||||||||||||| |
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| T |
16863372 |
agaggaagagggcgttcaggtgttagaggaaggggtagaggaagaattaacaatggaagtgttgaatgctacaaagtgtcacaagctgggacactatcaa |
16863471 |
T |
|
| Q |
233 |
aatgaatgtcccctatggggaaaaaatgcaaattatgctcaatttgaagatggtgaattgcttctgatggctcaatcatgcatgaacacaaatgccaaag |
332 |
Q |
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||||||||||| ||||||| | |||||||| | |||| | | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
16863472 |
aatgaatgtcctctatgggaagaaaatgcacactatgttgagtttgaagatggtgaattgcttctgatggctcaatcatgtttgaacacaaatgccaaag |
16863571 |
T |
|
| Q |
333 |
atgaggtatggtt |
345 |
Q |
| |
|
||||||||||||| |
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| T |
16863572 |
atgaggtatggtt |
16863584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 124; Significance: 1e-63; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 34 - 345
Target Start/End: Original strand, 20528896 - 20529205
Alignment:
| Q |
34 |
acttgttcaagaacgacgcataaaatctcagaatcaagaaattgatattgagcaagctttgaaggtttcgaatggaggaagaggatctatgggatttggt |
133 |
Q |
| |
|
|||||||||||||| |||||| |||||||| || ||||||| ||||| ||||||||||||||||||||| ||||| |||||||||||| |||||| ||| |
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| T |
20528896 |
acttgttcaagaacaacgcatgaaatctcaaaaccaagaaactgatactgagcaagctttgaaggtttctaatggtggaagaggatctgtgggatatggg |
20528995 |
T |
|
| Q |
134 |
agaggaagagggcgttcaggtgctagaggaaagggtaggggaagaatcaacacagattctattgagtgttataagtgtcacgagctgggacactatcaga |
233 |
Q |
| |
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|||||||||||||||||| | ||||||| || | |||||||| |||| ||||| |||| || ||||||||||| |||| ||||||||||||| |
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| T |
20528996 |
agaggaagagggcgttcaagcaa-agaggaagatgtggaggaagaattaaca-agatttagttgaatgcaataagtgtcacaagctaggacactatcaga |
20529093 |
T |
|
| Q |
234 |
atgaatgtcccctatggggaaaaaatgcaaattatgctcaatttgaagatggtgaattgcttctgatggctcaatcatgcatgaacacaaatgccaaaga |
333 |
Q |
| |
|
||||||||| ||||||| | |||| ||||||||||| ||||||||||||||||||| | ||| ||||||||| |||| |||||||||||| |||||| |
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| T |
20529094 |
atgaatgtcatctatgggaaccaaattcaaattatgctgaatttgaagatggtgaatttcatctcatggctcaaacatgattgaacacaaatgtcaaaga |
20529193 |
T |
|
| Q |
334 |
tgaggtatggtt |
345 |
Q |
| |
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|||||||||||| |
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| T |
20529194 |
tgaggtatggtt |
20529205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 23 - 345
Target Start/End: Complemental strand, 40613109 - 40612799
Alignment:
| Q |
23 |
cagagtagctcacttgttcaagaacgacgcataaaatctcagaatcaagaaattgatattgagcaagctttgaaggtttcgaatggaggaagaggatcta |
122 |
Q |
| |
|
|||||||| | |||||||||||||| || ||| |||||||| |||||||| |||||| |||| ||||||||||||||||| ||||| | |||||| | |
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| T |
40613109 |
cagagtagtttacttgttcaagaacaacacatgaaatctcaaaatcaagacattgatgttgaacaagctttgaaggtttccaatggtgaaagaggtttcg |
40613010 |
T |
|
| Q |
123 |
tgggatttggtagaggaagagggcgttcaggtgctagaggaaagggtaggggaagaatcaacacagattctattgagtgttataagtgtcacgagctggg |
222 |
Q |
| |
|
|||| | ||||||||||||||| ||||||||||||||||||| ||||||||| || | ||||||||| |||||||| | || |||| |
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| T |
40613009 |
tggggtatggtagaggaagaggacgttcaggtgctagaggaa------------gaatcaacaaagcaagtgttgagtgttttaagtgtcgcaagttggg |
40612922 |
T |
|
| Q |
223 |
acactatcagaatgaatgtcccctatggggaaaaaatgcaaattatgctcaatttgaagatggtgaattgcttctgatggctcaatcatgcatgaacaca |
322 |
Q |
| |
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|||||| |||||||| ||||| ||||||| | ||||||| || | |||| | ||||||||||||||||| ||||| ||||| ||||| ||| |||||||| |
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|
| T |
40612921 |
acactaccagaatgagtgtcctctatgggaagaaaatgctaactttgctaagtttgaagatggtgaattacttcttatggcccaatcttgcttgaacaca |
40612822 |
T |
|
| Q |
323 |
aatgccaaagatgaggtatggtt |
345 |
Q |
| |
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|| |||||||||||||||||||| |
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| T |
40612821 |
aacgccaaagatgaggtatggtt |
40612799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 157 - 345
Target Start/End: Original strand, 20542323 - 20542511
Alignment:
| Q |
157 |
tagaggaaagggtaggggaagaatcaacacagattctattgagtgttataagtgtcacgagctgggacactatcagaatgaatgtcccctatggggaaaa |
256 |
Q |
| |
|
|||||||| ||| || ||||||||||||| || | ||||||||| ||||||||| |||||||||||||||||||||| ||||| ||||||| | || |
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| T |
20542323 |
tagaggaaggggcagaggaagaatcaacaaagcaagtgttgagtgtttcaagtgtcacaagctgggacactatcagaatgagtgtcctctatgggaagaa |
20542422 |
T |
|
| Q |
257 |
aatgcaaattatgctcaatttgaagatggtgaattgcttctgatggctcaatcatgcatgaacacaaatgccaaagatgaggtatggtt |
345 |
Q |
| |
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||||| || | |||| | ||||||||||||||||| ||||| ||||||||||| ||| |||||||||| |||||||||||||||||||| |
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| T |
20542423 |
aatgctaactttgctgagtttgaagatggtgaattacttcttatggctcaatcttgcttgaacacaaacgccaaagatgaggtatggtt |
20542511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 99
Target Start/End: Original strand, 20542213 - 20542289
Alignment:
| Q |
23 |
cagagtagctcacttgttcaagaacgacgcataaaatctcagaatcaagaaattgatattgagcaagctttgaaggt |
99 |
Q |
| |
|
|||||||| | |||||||||||||| |||||| ||||||||||||||||| ||||| |||| |||||||||||||| |
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|
| T |
20542213 |
cagagtagtttacttgttcaagaacaacgcatgaaatctcagaatcaagactttgatgttgaacaagctttgaaggt |
20542289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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