View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11069A_low_62 (Length: 357)
Name: NF11069A_low_62
Description: NF11069A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11069A_low_62 |
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Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 19 - 333
Target Start/End: Complemental strand, 37180316 - 37179999
Alignment:
| Q |
19 |
catcaaactatcaatggcaatattcaaatccttcatcacaactttacttctagttgtgacaatatcaaacatgagcctagaagctcgtcatcttttgcaa |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
37180316 |
catcaaactatcaatggcaatattcaaatccttcatcacaactttacttctagttgtgacaatatcaaacatgagcctagaagctcgccatcttttgcaa |
37180217 |
T |
|
| Q |
119 |
acgac---acaaccaaatttaccaaccattcccactttaccaaaaccaacaacattaccacctttaccttcaattccaaatatgcctcaaggaaatcttc |
215 |
Q |
| |
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|| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37180216 |
actaccacacaaccaaatttaccaaccattcccactttaccaaaaccaacaacattaccacctttaccttcaattccaaatatgcctcaaggaaatcttc |
37180117 |
T |
|
| Q |
216 |
ctccattgcctactatcccttctatgcctaaactcactatgccaccacttccaagtcttcctacaaatattccaacaattccatctctcaacattccacc |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37180116 |
ctccattgcctactatcccttctatgcctaaactcactatgccaccacttccaagtcttcctacaaatattccaacaattccatctctcaacattccacc |
37180017 |
T |
|
| Q |
316 |
attgccagcagtcacttc |
333 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
37180016 |
attgccagcagtcacttc |
37179999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 19 - 333
Target Start/End: Original strand, 37189538 - 37189855
Alignment:
| Q |
19 |
catcaaactatcaatggcaatattcaaatccttcatcacaactttacttctagttgtgacaatatcaaacatgagcctagaagctcgtcatcttttgcaa |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
37189538 |
catcaaactatcaatggcaatattcaaatccttgatcacaactttacttctagttgtgacaatatcaaacatgagcctagaagctcgccatcttttgcaa |
37189637 |
T |
|
| Q |
119 |
acgac---acaaccaaatttaccaaccattcccactttaccaaaaccaacaacattaccacctttaccttcaattccaaatatgcctcaaggaaatcttc |
215 |
Q |
| |
|
|| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37189638 |
actaccacacaaccaaatttaccaaccattcccactttaccaaaaccaacaacattaccacctttaccttcaattccaaatatgcctcaaggaaatcttc |
37189737 |
T |
|
| Q |
216 |
ctccattgcctactatcccttctatgcctaaactcactatgccaccacttccaagtcttcctacaaatattccaacaattccatctctcaacattccacc |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37189738 |
ctccattgcctactatcccttctatgcctaaactcactatgccaccacttccaagtcttcctacaaatattccaacaattccatctctcaacattccacc |
37189837 |
T |
|
| Q |
316 |
attgccagcagtcacttc |
333 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
37189838 |
attgccagcagtcacttc |
37189855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 43 - 333
Target Start/End: Original strand, 37181445 - 37181738
Alignment:
| Q |
43 |
caaatccttcatcacaactttacttctagttgtgacaatatcaaacatgagcctagaagctcgtcatcttttgcaaacgac---acaaccaaatttacca |
139 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||| ||||| |||| |||||||||||||||||| |||||||||||||| || |||||||||||||||| |
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| T |
37181445 |
caaatccttcattgcaactttacttcttgttgtcacaatgtcaagcatgagcctagaagctcgccatcttttgcaaactaccacacaaccaaatttacca |
37181544 |
T |
|
| Q |
140 |
accattcccactttaccaaaaccaacaacattaccacctttaccttcaattccaaatatgcctcaaggaaatcttcctccattgcctactatcccttcta |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37181545 |
gccattcccactttaccaaaaccaacaacattaccacctttaccttcaattccaaatatgcctcaaggaaatcttcctccattgcctactatcccttcta |
37181644 |
T |
|
| Q |
240 |
tgcctaaactcactatgccaccacttccaagtcttcctacaaatattccaacaattccatctctcaacattccaccattgccagcagtcacttc |
333 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37181645 |
tgcctaaactcactatgccaccacttccaagtcttcctacaaatattccaacaattccatctctcaacattccaccattgccagcagtcacttc |
37181738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 27 - 333
Target Start/End: Complemental strand, 37187988 - 37187682
Alignment:
| Q |
27 |
tatcaatggcaatattcaaatccttcatcacaactttacttctagttgtgacaatatcaaacatgagcctagaagctcgtcatcttttgcaaacgacaca |
126 |
Q |
| |
|
||||||||||| | |||||||||||||| | |||||||||| |||||||| || |||| |||||||||||||||||| |||||||| || || ||||| |
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| T |
37187988 |
tatcaatggcatcaagcaaatccttcatcatagctttacttcttgttgtgaccatgtcaagcatgagcctagaagctcgccatcttttacagacaacaca |
37187889 |
T |
|
| Q |
127 |
accaaatttaccaaccattcccactttaccaaaaccaacaacattaccacctttaccttcaattccaaatatgcctcaaggaaatcttcctccattgcct |
226 |
Q |
| |
|
||||||||| || | |||||||| ||||||||| ||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
37187888 |
accaaatttgcctaacattcccaatttaccaaatccaactacattaccacctttgccttcaattccaaatatgcctcagggaaatcttcctccattgcct |
37187789 |
T |
|
| Q |
227 |
actatcccttctatgcctaaactcactatgccaccacttccaagtcttcctacaaatattccaacaattccatctctcaacattccaccattgccagcag |
326 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
37187788 |
actatcccttctatgcctaaactcactatgccaccacttcctagctttcctacaaattttccaacaattccatctctcaacattccaccattgccagcag |
37187689 |
T |
|
| Q |
327 |
tcacttc |
333 |
Q |
| |
|
|||||| |
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|
| T |
37187688 |
ccacttc |
37187682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 182 - 230
Target Start/End: Complemental strand, 38704268 - 38704220
Alignment:
| Q |
182 |
ccttcaattccaaatatgcctcaaggaaatcttcctccattgcctacta |
230 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38704268 |
ccttcaattccaaatatgcctcaaggaaatcttcctccattgcctacta |
38704220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 43 - 120
Target Start/End: Complemental strand, 38704369 - 38704288
Alignment:
| Q |
43 |
caaatccttcatcacaactt----tacttctagttgtgacaatatcaaacatgagcctagaagctcgtcatcttttgcaaac |
120 |
Q |
| |
|
||||||||| |||||||||| ||||||| ||||||||||| |||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
38704369 |
caaatccttaatcacaacttaatttacttcttgttgtgacaatgtcaagcatgaacctagaagctcgtcatcttttgcaaac |
38704288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 7e-31; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 200 - 318
Target Start/End: Original strand, 27096701 - 27096816
Alignment:
| Q |
200 |
cctcaaggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttccaagtcttcctacaaatattccaacaattccat |
299 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||| || ||||||| |||||| |
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| T |
27096701 |
cctcaaggtaatgttcctccattgcctactatcccttctatgcctaagctcactatgccaccacttcctagcattcctaccaa---tccaacacttccat |
27096797 |
T |
|
| Q |
300 |
ctctcaacattccaccatt |
318 |
Q |
| |
|
|||||||| |||||||||| |
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|
| T |
27096798 |
ctctcaactttccaccatt |
27096816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 200 - 318
Target Start/End: Original strand, 27103004 - 27103119
Alignment:
| Q |
200 |
cctcaaggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttccaagtcttcctacaaatattccaacaattccat |
299 |
Q |
| |
|
|||||||| ||| |||||||||||||||| |||||||| ||||||| |||||||||||||||||||| || |||| || || ||||||| |||||| |
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| T |
27103004 |
cctcaaggtaatgttcctccattgcctaccatcccttcagtgcctaagctcactatgccaccacttcctagcattccaaccaa---tccaacacttccat |
27103100 |
T |
|
| Q |
300 |
ctctcaacattccaccatt |
318 |
Q |
| |
|
|||||||| |||||||||| |
|
|
| T |
27103101 |
ctctcaactttccaccatt |
27103119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 83 - 166
Target Start/End: Original strand, 27102812 - 27102898
Alignment:
| Q |
83 |
tcaaacatgagcctagaagctcgtcatcttttgcaaacgac---acaaccaaatttaccaaccattcccactttaccaaaaccaaca |
166 |
Q |
| |
|
|||||||||| |||||||||||| | ||||||||||| || |||||| ||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
27102812 |
tcaaacatgaacctagaagctcgcaaccttttgcaaacaactacacaacccaatttgccaagcattcccactttaccaaaaccaaca |
27102898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 83 - 166
Target Start/End: Original strand, 27096527 - 27096613
Alignment:
| Q |
83 |
tcaaacatgagcctagaagctcgtcatcttttgca---aacgacacaaccaaatttaccaaccattcccactttaccaaaaccaaca |
166 |
Q |
| |
|
||||||||||||||||||||||| | |||||||| ||| |||||||| ||||| |||| |||||||||||| ||||| |||||| |
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|
| T |
27096527 |
tcaaacatgagcctagaagctcgaaaccttttgcaaacaaccacacaacccaatttgccaaacattcccactttgccaaatccaaca |
27096613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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